Moc09g07680 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g07680
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Histone H2A
Location	chr9: 6094905 .. 6095894 (-)
RNA-Seq Expression	Moc09g07680
Synteny	Moc09g07680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGTCTGGTTCGACCAAGGGCGGCAGAGGGAAACCGAAGGCCACGAAGTCTGTCTCGCGGTCTCAGAAAGCCGGCCTTCAGTTCCCCGTCGGTCGTATTGCGCGGTTTCTCAAAGCCGGTAAGTATGCTGAGCGCGTCGGCGCCGGTGCTCCCGTCTACCTATCCGCCGTCCTTGAATATCTCGCCGCCGAGGTTAGTGTTAGATCTTCTTCTCAGATCTTTTACTTGTGTTTCTGATCTGTTTGTTTGTGGGGTTATGGGGTTCTGAGGTTCTGAATGCGATGAAGCAGAGTAATGTGTAGTTTTCTGATCAACTCGAATTGGAAGTATTGTATCTGATTTAGTTCTGTTTGTTCTGCTTTTACTTTGGAATTGATTGGAAGAAGTGGAATCCGATTCGTTGCTATGTAGATGTGATTGATGAAGAAACTGATCATGGTTTTGAAAGGATCTTATGAAAACGAAGTCATCAATTTATCATCACTTTTTAATCGTAGTATTAATCTTGAGCATATCGTTTTGGTCTGTCTTAACGTCTTTGTTTTGCCATTGCATTGCATCCAATTGGAAAGTTCATAATCAATGCACTCTATTTAGTTTCTTCAAGTGAATTCACTGGTTCCATGTCAAATTATTTGGTGAATAAGATCAAGAAAGTTAAACCATGTCGATTTGTTCTTCAAATGGATAAAATTTCAGTTGGGTTTCATCAAAATTTTCATTTGAGAGTTTCTTTGAAGTACCAAAAGTCTCCATTTGCAGGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAATCGCATTGTTCCGAGGCACATACAGCTTGCAGTTCGCAACGACGAGGAGCTGAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAGGCTGGATCAGGGAAAGGCGACATCGGGTCTGCATCACAAGAGTTCTAA

mRNA sequence

ATGAGTTCGTCTGGTTCGACCAAGGGCGGCAGAGGGAAACCGAAGGCCACGAAGTCTGTCTCGCGGTCTCAGAAAGCCGGCCTTCAGTTCCCCGTCGGTCGTATTGCGCGGTTTCTCAAAGCCGGTAAGTATGCTGAGCGCGTCGGCGCCGGTGCTCCCGTCTACCTATCCGCCGTCCTTGAATATCTCGCCGCCGAGGTTAGTGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAATCGCATTGTTCCGAGGCACATACAGCTTGCAGTTCGCAACGACGAGGAGCTGAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAGGCTGGATCAGGGAAAGGCGACATCGGGTCTGCATCACAAGAGTTCTAA

Coding sequence (CDS)

ATGAGTTCGTCTGGTTCGACCAAGGGCGGCAGAGGGAAACCGAAGGCCACGAAGTCTGTCTCGCGGTCTCAGAAAGCCGGCCTTCAGTTCCCCGTCGGTCGTATTGCGCGGTTTCTCAAAGCCGGTAAGTATGCTGAGCGCGTCGGCGCCGGTGCTCCCGTCTACCTATCCGCCGTCCTTGAATATCTCGCCGCCGAGGTTAGTGTGCTTGAGCTTGCAGGCAATGCTGCCAGAGACAACAAGAAGAATCGCATTGTTCCGAGGCACATACAGCTTGCAGTTCGCAACGACGAGGAGCTGAGCAAGCTTTTGGGTGATGTGACCATTGCAAATGGTGGAGTGTTGCCGAATATCCATCAAAATCTCTTGCCTAAGAAGGCTGGATCAGGGAAAGGCGACATCGGGTCTGCATCACAAGAGTTCTAA

Protein sequence

MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPKKAGSGKGDIGSASQEF

Homology

[Close]

BLAST of Moc09g07680 vs. NCBI nr
Match: XP_022150163.1 (histone H2AX [Momordica charantia])

HSP 1 Score: 258.8 bits (660), Expect = 2.6e-65
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
           NLLPKKAGSGKGDIGSASQEF
Sbjct: 121 NLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. NCBI nr
Match: XP_022953583.1 (histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima] >XP_023548485.1 histone H2AX [Cucurbita pepo subsp. pepo] >XP_023548486.1 histone H2AX [Cucurbita pepo subsp. pepo] >KAG6575874.1 Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.5 bits (654), Expect = 1.3e-64
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
           NLLPKKAGSGKGDIGSASQEF
Sbjct: 121 NLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. NCBI nr
Match: XP_004148883.1 (histone H2AX [Cucumis sativus] >KGN44844.1 hypothetical protein Csa_016634 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-64
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKKAGSGKGDIGSASQEF
Sbjct: 121 TLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. NCBI nr
Match: XP_008451417.1 (PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo var. makuwa] >TYK18270.1 histone H2AX [Cucumis melo var. makuwa])

HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKKAGSGKGDIGSASQEF
Sbjct: 121 TLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. NCBI nr
Match: XP_038896927.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 252.7 bits (644), Expect = 1.9e-63
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
           NLLPKKAGS KGDIGSASQEF
Sbjct: 121 NLLPKKAGSSKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.2e-62
Identity = 128/141 (90.78%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+ +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKK G GKG+IGSASQEF
Sbjct: 121 TLLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. ExPASy Swiss-Prot
Match: Q9S9K7 (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-61
Identity = 127/140 (90.71%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 2   SSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQN 121
           YLAAE  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ 
Sbjct: 65  YLAAE--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 124

Query: 122 LLPKKAGSGKGDIGSASQEF 142
           LLP K G  KGDIGSASQEF
Sbjct: 125 LLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Moc09g07680 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.1e-61
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 2   SSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQN 121
           YLAAE  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ 
Sbjct: 65  YLAAE--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 124

Query: 122 LLPKKAGSGKGDIGSASQEF 142
           LLP K G  KGDIGSASQEF
Sbjct: 125 LLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Moc09g07680 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.5e-60
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSG+ KGGRGK K+TKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MSSSGA-KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKK+G  KG+IGSASQEF
Sbjct: 121 VLLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of Moc09g07680 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.8e-56
Identity = 122/141 (86.52%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSS+G   GGRGK K +KSVSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSAGG-GGGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKK G  K DIGSASQEF
Sbjct: 121 TLLPKKGGKDKADIGSASQEF 138

[Close]

BLAST of Moc09g07680 vs. ExPASy TrEMBL
Match: A0A6J1D8Q1 (Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.3e-65
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
           NLLPKKAGSGKGDIGSASQEF
Sbjct: 121 NLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. ExPASy TrEMBL
Match: A0A6J1JMN9 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.4e-65
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
           NLLPKKAGSGKGDIGSASQEF
Sbjct: 121 NLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. ExPASy TrEMBL
Match: A0A6J1GNQ0 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 6.4e-65
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
           NLLPKKAGSGKGDIGSASQEF
Sbjct: 121 NLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. ExPASy TrEMBL
Match: A0A0A0K7H2 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 137/141 (97.16%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS STKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKKAGSGKGDIGSASQEF
Sbjct: 121 TLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. ExPASy TrEMBL
Match: A0A5A7UVH7 (Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.2e-64
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           MSSS S+KGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL
Sbjct: 1   MSSSASSKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ
Sbjct: 61  EYLAAE--VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120

Query: 121 NLLPKKAGSGKGDIGSASQEF 142
            LLPKKAGSGKGDIGSASQEF
Sbjct: 121 TLLPKKAGSGKGDIGSASQEF 139

[Close]

BLAST of Moc09g07680 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 236.5 bits (602), Expect = 1.3e-62
Identity = 127/140 (90.71%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 2   SSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQN 121
           YLAAE  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ 
Sbjct: 65  YLAAE--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 124

Query: 122 LLPKKAGSGKGDIGSASQEF 142
           LLP K G  KGDIGSASQEF
Sbjct: 125 LLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Moc09g07680 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 235.3 bits (599), Expect = 2.9e-62
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 2   SSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 61
           + SG+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSAVLE
Sbjct: 5   AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLE 64

Query: 62  YLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQN 121
           YLAAE  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ 
Sbjct: 65  YLAAE--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 124

Query: 122 LLPKKAGSGKGDIGSASQEF 142
           LLP K G  KGDIGSASQEF
Sbjct: 125 LLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Moc09g07680 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPK 129
           E  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPK
Sbjct: 63  E--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 122

Query: 130 KAGSGK 132
           KAGS K
Sbjct: 123 KAGSSK 126

[Close]

BLAST of Moc09g07680 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 196.8 bits (499), Expect = 1.1e-50
Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 10  GRGKP----KATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 69
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 70  EVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQNLLPK 129
           E  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH  LLPK
Sbjct: 63  E--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPK 122

Query: 130 KAGSGK 132
           KAGS K
Sbjct: 123 KAGSSK 126

[Close]

BLAST of Moc09g07680 vs. TAIR 10
Match: AT5G54640.1 (Histone superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 3.3e-50
Identity = 109/131 (83.21%), Postives = 113/131 (86.26%), Query Frame = 0


Query: 1   MSSSGSTKGGRGKPKATKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
           M+  G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVL
Sbjct: 1   MAGRGKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVL 60

Query: 61  EYLAAEVSVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGDVTIANGGVLPNIHQ 120
           EYLAAE  VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGDVTIANGGV+PNIH 
Sbjct: 61  EYLAAE--VLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHN 120

Query: 121 NLLPKKAGSGK 132
            LLPKKAG+ K
Sbjct: 121 LLLPKKAGASK 126

The following BLAST results are available for this feature:

BLAST of Moc09g07680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150163.1	2.6e-65	98.58	histone H2AX [Momordica charantia]	[more]
XP_022953583.1	1.3e-64	97.87	histone H2AX [Cucurbita moschata] >XP_022991732.1 histone H2AX [Cucurbita maxima...	[more]
XP_004148883.1	6.5e-64	97.16	histone H2AX [Cucumis sativus] >KGN44844.1 hypothetical protein Csa_016634 [Cucu...	[more]
XP_008451417.1	1.9e-63	96.45	PREDICTED: histone H2AX [Cucumis melo] >KAA0057549.1 histone H2AX [Cucumis melo ...	[more]
XP_038896927.1	1.9e-63	96.45	histone H2AX-like [Benincasa hispida]	[more]

BLAST of Moc09g07680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	2.2e-62	90.78	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
Q9S9K7	1.8e-61	90.71	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
O04848	4.1e-61	90.00	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
P35063	3.5e-60	90.78	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.8e-56	86.52	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]

BLAST of Moc09g07680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8Q1	1.3e-65	98.58	Histone H2A OS=Momordica charantia OX=3673 GN=LOC111018409 PE=3 SV=1	[more]
A0A6J1JMN9	6.4e-65	97.87	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111488262 PE=3 SV=1	[more]
A0A6J1GNQ0	6.4e-65	97.87	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456077 PE=3 SV=1	[more]
A0A0A0K7H2	3.2e-64	97.16	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390230 PE=3 SV=1	[more]
A0A5A7UVH7	9.2e-64	96.45	Histone H2A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002130 P...	[more]

BLAST of Moc09g07680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54690.1	1.3e-62	90.71	gamma histone variant H2AX	[more]
AT1G08880.1	2.9e-62	90.00	Histone superfamily protein	[more]
AT4G27230.1	1.1e-50	86.51	histone H2A 2	[more]
AT4G27230.2	1.1e-50	86.51	histone H2A 2	[more]
AT5G54640.1	3.3e-50	83.21	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 78..92 score: 75.49 coord: 47..62 score: 84.58 coord: 18..40 score: 69.94 coord: 62..75 score: 41.5 coord: 106..124 score: 70.48
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 7..129 e-value: 7.8E-75 score: 264.6
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 12..126 e-value: 5.43089E-66 score: 194.091
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 14..95 e-value: 2.2E-12 score: 47.5
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 98..131 e-value: 9.4E-19 score: 66.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..133 e-value: 2.5E-61 score: 207.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 21..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430:SF288	HISTONE H2A	coord: 4..139
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 4..139
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 26..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g07680.1	Moc09g07680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity