Moc09g06050 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g06050
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	transcription factor MYB78
Location	chr9: 4691513 .. 4692103 (+)
RNA-Seq Expression	Moc09g06050
Synteny	Moc09g06050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATACGTGTGGATCCCCCGTTTGCTCGAACGAATCCAAGCCTCAACCGACACCGTCGCCGTCGCTGCCGCTACCGATCCCGGTCAACCACCGCACCCTCTCCTCGACAGGACCCACCCGTCGCCCTCCGACTCCGCTTGGGTCAATTCTCATTTGGCTCCCGCAACTTCATCATCCGACTCCGGATCGGATCAGGTTGTTAAAACTAACCACTCAACTCAAAAACTAAAAAAATTATAAGTCTAGATATATATTTAATTTATTGATATTTTTAACTCCAATTAGCTTATTTAATTTATTGATATTTTTAACTCCAATCTTAAGCTAATTGCGGTATATTTAATCATTTATTTATTCATATTCTTAATGTAGGTCCAACCACAAGTCTCGCCAGTTTCAGACGTGACGGAGAACTTCAATCTCGTCGGTATTGGCGAGGATCACGACGGGACGGTAATGCTAATGGAACATAGCTGTGACGGGGTGGCGGTGAATGGGTGGATAGGTGGCGGAGAGTCATTGGACGACGGATTTTGGGATGAAGAAGACTTGTGGTTCTTGCAGCAACAATTTGGTGATGATGTTTGA

mRNA sequence

ATGCGATACGTGTGGATCCCCCGTTTGCTCGAACGAATCCAAGCCTCAACCGACACCGTCGCCGTCGCTGCCGCTACCGATCCCGGTCAACCACCGCACCCTCTCCTCGACAGGACCCACCCGTCGCCCTCCGACTCCGCTTGGGTCAATTCTCATTTGGCTCCCGCAACTTCATCATCCGACTCCGGATCGGATCAGGTCCAACCACAAGTCTCGCCAGTTTCAGACGTGACGGAGAACTTCAATCTCGTCGGTATTGGCGAGGATCACGACGGGACGGTAATGCTAATGGAACATAGCTGTGACGGGGTGGCGGTGAATGGGTGGATAGGTGGCGGAGAGTCATTGGACGACGGATTTTGGGATGAAGAAGACTTGTGGTTCTTGCAGCAACAATTTGGTGATGATGTTTGA

Coding sequence (CDS)

ATGCGATACGTGTGGATCCCCCGTTTGCTCGAACGAATCCAAGCCTCAACCGACACCGTCGCCGTCGCTGCCGCTACCGATCCCGGTCAACCACCGCACCCTCTCCTCGACAGGACCCACCCGTCGCCCTCCGACTCCGCTTGGGTCAATTCTCATTTGGCTCCCGCAACTTCATCATCCGACTCCGGATCGGATCAGGTCCAACCACAAGTCTCGCCAGTTTCAGACGTGACGGAGAACTTCAATCTCGTCGGTATTGGCGAGGATCACGACGGGACGGTAATGCTAATGGAACATAGCTGTGACGGGGTGGCGGTGAATGGGTGGATAGGTGGCGGAGAGTCATTGGACGACGGATTTTGGGATGAAGAAGACTTGTGGTTCTTGCAGCAACAATTTGGTGATGATGTTTGA

Protein sequence

MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSSDSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGFWDEEDLWFLQQQFGDDV

Homology

[Close]

BLAST of Moc09g06050 vs. NCBI nr
Match: XP_022151294.1 (transcription factor MYB78 [Momordica charantia])

HSP 1 Score: 283.5 bits (724), Expect = 9.7e-73
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS
Sbjct: 141 MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 200

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 120
           DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF
Sbjct: 201 DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 260

Query: 121 WDEEDLWFLQQQFGDDV 138
           WDEEDLWFLQQQFGDDV
Sbjct: 261 WDEEDLWFLQQQFGDDV 277

[Close]

BLAST of Moc09g06050 vs. NCBI nr
Match: XP_038899114.1 (transcription factor MYB78-like [Benincasa hispida])

HSP 1 Score: 183.7 bits (465), Expect = 1.1e-42
Identity = 96/138 (69.57%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  + +   D  QPPHP L+ T  SPS S+W+N H+AP TSSS
Sbjct: 144 MRYVWMPRLLERIQASTD--STSTTVDVIQPPHPPLELTQLSPSGSSWINPHVAPTTSSS 203

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 120
           DS SDQVQ QVS VSDV ENFN VG  E+ DG VMLMEH CDG A+NGWIGGGE L++GF
Sbjct: 204 DSISDQVQLQVSSVSDVVENFNSVGTSEE-DGMVMLMEHGCDGEAMNGWIGGGELLENGF 263

Query: 121 WDEEDLW-FLQQQFGDDV 138
           W+EED+W FLQQQ GDDV
Sbjct: 264 WNEEDMWSFLQQQLGDDV 278

[Close]

BLAST of Moc09g06050 vs. NCBI nr
Match: XP_004136147.2 (transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein Csa_016868 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 94/139 (67.63%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  +     D  QPPHP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 145 MRYVWMPRLLERIQASTD--STTTIVDVIQPPHPPLELTQSSPSGSSWVNPHVAPTTSSS 204

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVA-VNGWIGGGESLDDG 120
           DS SDQVQ QVSPVSD+TENFN+V   E+ DG +MLMEH CDG A +N WIGGGE L++G
Sbjct: 205 DSISDQVQLQVSPVSDMTENFNMVDKSEE-DGMMMLMEHGCDGEAMINEWIGGGEVLENG 264

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 265 LWNEEDMWTLLQQQFGDDV 280

[Close]

BLAST of Moc09g06050 vs. NCBI nr
Match: TYJ96893.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-38
Identity = 92/139 (66.19%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  + A   D  QP HP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 145 MRYVWMPRLLERIQASTD--STATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSS 204

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCD-GVAVNGWIGGGESLDDG 120
           DS SDQVQ QVSP+SDV ENFN+V   E+ D  VMLMEH CD G A+N WIGG E L++G
Sbjct: 205 DSISDQVQLQVSPISDVVENFNMVDTTEE-DRVVMLMEHGCDVGEAMNEWIGGEELLENG 264

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 265 LWNEEDMWSLLQQQFGDDV 280

[Close]

BLAST of Moc09g06050 vs. NCBI nr
Match: KAA0058537.1 (transcription factor MYB108-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 6.0e-38
Identity = 92/139 (66.19%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  + A   D  QP HP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 141 MRYVWMPRLLERIQASTD--STATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSS 200

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCD-GVAVNGWIGGGESLDDG 120
           DS SDQVQ QVSP+SDV ENFN+V   E+ D  VMLMEH CD G A+N WIGG E L++G
Sbjct: 201 DSISDQVQLQVSPISDVVENFNMVDTTEE-DRVVMLMEHGCDVGEAMNEWIGGEELLENG 260

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 261 LWNEEDMWSLLQQQFGDDV 276

[Close]

BLAST of Moc09g06050 vs. ExPASy TrEMBL
Match: A0A6J1DCK9 (transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 4.7e-73
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS
Sbjct: 141 MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 200

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 120
           DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF
Sbjct: 201 DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGWIGGGESLDDGF 260

Query: 121 WDEEDLWFLQQQFGDDV 138
           WDEEDLWFLQQQFGDDV
Sbjct: 261 WDEEDLWFLQQQFGDDV 277

[Close]

BLAST of Moc09g06050 vs. ExPASy TrEMBL
Match: A0A0A0K5V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 94/139 (67.63%), Postives = 108/139 (77.70%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  +     D  QPPHP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 141 MRYVWMPRLLERIQASTD--STTTIVDVIQPPHPPLELTQSSPSGSSWVNPHVAPTTSSS 200

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVA-VNGWIGGGESLDDG 120
           DS SDQVQ QVSPVSD+TENFN+V   E+ DG +MLMEH CDG A +N WIGGGE L++G
Sbjct: 201 DSISDQVQLQVSPVSDMTENFNMVDKSEE-DGMMMLMEHGCDGEAMINEWIGGGEVLENG 260

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 261 LWNEEDMWTLLQQQFGDDV 276

[Close]

BLAST of Moc09g06050 vs. ExPASy TrEMBL
Match: A0A5D3BC50 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00030 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.9e-38
Identity = 92/139 (66.19%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  + A   D  QP HP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 145 MRYVWMPRLLERIQASTD--STATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSS 204

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCD-GVAVNGWIGGGESLDDG 120
           DS SDQVQ QVSP+SDV ENFN+V   E+ D  VMLMEH CD G A+N WIGG E L++G
Sbjct: 205 DSISDQVQLQVSPISDVVENFNMVDTTEE-DRVVMLMEHGCDVGEAMNEWIGGEELLENG 264

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 265 LWNEEDMWSLLQQQFGDDV 280

[Close]

BLAST of Moc09g06050 vs. ExPASy TrEMBL
Match: A0A5A7UUY5 (Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G00030 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.9e-38
Identity = 92/139 (66.19%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  + A   D  QP HP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 141 MRYVWMPRLLERIQASTD--STATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSS 200

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCD-GVAVNGWIGGGESLDDG 120
           DS SDQVQ QVSP+SDV ENFN+V   E+ D  VMLMEH CD G A+N WIGG E L++G
Sbjct: 201 DSISDQVQLQVSPISDVVENFNMVDTTEE-DRVVMLMEHGCDVGEAMNEWIGGEELLENG 260

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 261 LWNEEDMWSLLQQQFGDDV 276

[Close]

BLAST of Moc09g06050 vs. ExPASy TrEMBL
Match: A0A1S3CEB9 (transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.3e-37
Identity = 91/139 (65.47%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQASTDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWVNSHLAPATSSS 60
           MRYVW+PRLLERIQASTD  + A   D  QP HP L+ T  SPS S+WVN H+AP TSSS
Sbjct: 145 MRYVWMPRLLERIQASTD--STATTVDVIQPSHPPLELTQSSPSGSSWVNPHVAPTTSSS 204

Query: 61  DSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCD-GVAVNGWIGGGESLDDG 120
           DS  DQVQ QVSPVSDV ENFN+V   E+ D  VMLMEH CD   A+N WIGG E L++G
Sbjct: 205 DSIFDQVQLQVSPVSDVVENFNMVDTTEE-DRVVMLMEHGCDVEEAMNEWIGGEELLENG 264

Query: 121 FWDEEDLW-FLQQQFGDDV 138
            W+EED+W  LQQQFGDDV
Sbjct: 265 LWNEEDMWSLLQQQFGDDV 280

[Close]

BLAST of Moc09g06050 vs. TAIR 10
Match: AT2G47190.1 (myb domain protein 2 )

HSP 1 Score: 45.4 bits (106), Expect = 4.2e-05
Identity = 52/149 (34.90%), Postives = 62/149 (41.61%), Query Frame = 0


Query: 1   MRYVWIPRLLERIQA----STDTVAVAAATDPGQPPHPLLDRTHPSPSDSAWV----NSH 60
           MR VW+PRL+ERI A    +T     +  TDP QP +       PSP +  +V    N H
Sbjct: 140 MRNVWMPRLVERINAQSLPTTCEQVESMITDPSQPVN------EPSPVEPGFVQFSQNHH 199

Query: 61  --LAPATSSSDSGSDQVQPQVSPVSDVTENFNLVGIGEDHDGTVMLMEHSCDGVAVNGW- 120
               PAT  S + S+      S V     N    G G D  G     E        N W 
Sbjct: 200 QQFVPATELSATSSNSPAETFSDVRGGVVN----GSGYDPSGQTGFGE-------FNDWG 259

Query: 121 -IGGGESLDDGFW-DEEDLWFLQQQFGDD 137
            +GG     D  W DEE  WFLQ QF  D
Sbjct: 260 CVGG-----DNMWTDEESFWFLQDQFCPD 266

The following BLAST results are available for this feature:

BLAST of Moc09g06050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151294.1	9.7e-73	100.00	transcription factor MYB78 [Momordica charantia]	[more]
XP_038899114.1	1.1e-42	69.57	transcription factor MYB78-like [Benincasa hispida]	[more]
XP_004136147.2	2.9e-40	67.63	transcription factor MYB78 [Cucumis sativus] >KAE8646370.1 hypothetical protein ...	[more]
TYJ96893.1	6.0e-38	66.19	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]
KAA0058537.1	6.0e-38	66.19	transcription factor MYB108-like protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc09g06050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g06050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCK9	4.7e-73	100.00	transcription factor MYB78 OS=Momordica charantia OX=3673 GN=LOC111019258 PE=4 S...	[more]
A0A0A0K5V3	1.4e-40	67.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G413890 PE=4 SV=1	[more]
A0A5D3BC50	2.9e-38	66.19	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7UUY5	2.9e-38	66.19	Transcription factor MYB108-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CEB9	9.3e-37	65.47	transcription factor MYB108-like OS=Cucumis melo OX=3656 GN=LOC103500004 PE=4 SV...	[more]

BLAST of Moc09g06050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47190.1	4.2e-05	34.90	myb domain protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g06050.1	Moc09g06050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding