Moc09g02260 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g02260
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Integrase_H2C2 domain-containing protein
Location	chr9: 1858790 .. 1859188 (-)
RNA-Seq Expression	Moc09g02260
Synteny	Moc09g02260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGTGTTGACCTTGCAGATGGCGAGTTGGTGGAGGACGATGTCGAGCTCGGCCTTGCTATACTCTATCTGACGCTGGAGGTCGCGGATGATGCGGTAGCAGCCGCCGACGGGGTCGAGGGAGCGGACGTCGGACTGGAAGATGATGGTACGCATGGCCTCTTCCTTCTCGAAGGGGTCGAGGTTCTTGATGATCTTGGTGATGTTGCTGACGCCGAAGAGCTTGTGGGCGTTCAAGAATTGGCGCTGCCGGTCGTGGGGGAAGTATGGGGCAAGAATGCAGTCCGGGGCGCACTTCCGGCGCTGGTATTTGCAGGCGGCGCAGGCCTGGGTGGTGGCGGAGGACGGCGGCGGGTGGGATCTGCTGTGGTGGTGGGTGCTGCTGCTGCTCATTGA

mRNA sequence

ATGTTGAGTGTTGACCTTGCAGATGGCGAGTTGGTGGAGGACGATGTCGAGCTCGGCCTTGCTATACTCTATCTGACGCTGGAGGTCGCGGATGATGCGGTAGCAGCCGCCGACGGGGTCGAGGGAGCGGACGTCGGACTGGAAGATGATGGTACGCATGGCCTCTTCCTTCTCGAAGGGGTCGAGGTTCTTGATGATCTTGGTGATGTTGCTGACGCCGAAGAGCTTGTGGGCGTTCAAGAATTGGCGCTGCCGGTCGTGGGGGAAGTATGGGGCAAGAATGCAGTCCGGGGCGCACTTCCGGCGCTGGTATTTGCAGGCGGCGCAGGCCTGGGTGGTGGCGGAGGACGGCGGCGGGTGGGATCTGCTGTGGTGGTGGGTGCTGCTGCTGCTCATTGA

Coding sequence (CDS)

ATGTTGAGTGTTGACCTTGCAGATGGCGAGTTGGTGGAGGACGATGTCGAGCTCGGCCTTGCTATACTCTATCTGACGCTGGAGGTCGCGGATGATGCGGTAGCAGCCGCCGACGGGGTCGAGGGAGCGGACGTCGGACTGGAAGATGATGGTACGCATGGCCTCTTCCTTCTCGAAGGGGTCGAGGTTCTTGATGATCTTGGTGATGTTGCTGACGCCGAAGAGCTTGTGGGCGTTCAAGAATTGGCGCTGCCGGTCGTGGGGGAAGTATGGGGCAAGAATGCAGTCCGGGGCGCACTTCCGGCGCTGGTATTTGCAGGCGGCGCAGGCCTGGGTGGTGGCGGAGGACGGCGGCGGGTGGGATCTGCTGTGGTGGTGGGTGCTGCTGCTGCTCATTGA

Protein sequence

MLSVDLADGELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDDLGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLGGGGGRRRVGSAVVVGAAAAH

Homology

[Close]

BLAST of Moc09g02260 vs. NCBI nr
Match: PON48152.1 (hypothetical protein PanWU01x14_239400 [Parasponia andersonii])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 10  ELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLE-GVEVLDDLG 69
           E++E++VELGL  + L LEV DDAVAAA+GV GA VGLEDDG HG+ L + GVE+ DDLG
Sbjct: 43  EMLENEVELGLGEVNLALEVLDDAVAAANGVGGAGVGLEDDGAHGVVLGDGGVELPDDLG 102

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAVRGALPALV A  A L
Sbjct: 103 DVADAEELVRVEELPLRVVGEVRGENAVRGALPALVLACSASL 145

[Close]

BLAST of Moc09g02260 vs. NCBI nr
Match: PON96154.1 (hypothetical protein TorRG33x02_080840 [Trema orientale])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 10  ELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFL-LEGVEVLDDLG 69
           E++ED+VELGL  + L LEV DDAVAAA+GV GA VGLEDDG HG+     GVE+ DDLG
Sbjct: 45  EMLEDEVELGLGEVNLALEVLDDAVAAANGVGGARVGLEDDGAHGVVPGGGGVELPDDLG 104

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAV G LPALV A  A L
Sbjct: 105 DVADAEELVRVEELPLRVVGEVRGQNAVGGTLPALVLACSASL 147

[Close]

BLAST of Moc09g02260 vs. NCBI nr
Match: VFQ96809.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 9   GELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDDLG 68
           G+++ D+VELGL+++ L LEVADD VAA D V+ +++G +DDG HGL L+E  +  +DLG
Sbjct: 130 GDVMVDEVELGLSLVDLVLEVADDGVAATDRVDCSNIGFKDDGAHGLVLVERAKRTNDLG 189

Query: 69  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG---------GGGGRR- 127
           D+AD E+LVGV ELAL VVGE+ G++A+RGAL ALV    AGLG         G GGR  
Sbjct: 190 DIADTEQLVGVLELALAVVGEIGGEDAIRGALSALVLTSRAGLGATAVAVVVVGPGGRND 249

[Close]

BLAST of Moc09g02260 vs. NCBI nr
Match: CAN78640.1 (hypothetical protein VITISV_031739 [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 3.7e-21
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 7   ADGELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDD 66
           A G+++ED VEL L +L L LEV DD VA ADGV GADV LE+DG HGL L+  VEV DD
Sbjct: 828 AYGQVMEDKVELRLGVLDLALEVTDDTVATADGVGGADVRLENDGAHGLVLVRRVEVADD 887

Query: 67  LGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG 113
           LGDVAD ++ + V+ELAL  V ++ G+NAVRGA   LVFA  A LG
Sbjct: 888 LGDVADPKQFMAVEELALATVRKIRGENAVRGAFSTLVFASLASLG 933

[Close]

BLAST of Moc09g02260 vs. NCBI nr
Match: VFQ82647.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 9   GELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDDLG 68
           G+++ D+VELGL+++ L LEVADD VAA D V+ +++G +DDG HGL L+E  +  +DLG
Sbjct: 32  GDVMVDEVELGLSLVDLVLEVADDGVAATDRVDCSNIGFKDDGAHGLVLVERAKRTNDLG 91

Query: 69  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLGGGGGRRRVGSAVVV 127
           D+AD E+LVGV EL L VVGE+ G++A+RGAL ALV    AGLG        G+ VVV
Sbjct: 92  DIADTEQLVGVLELVLAVVGEIGGEDAIRGALSALVLTSRAGLGAA----TAGAVVVV 145

[Close]

BLAST of Moc09g02260 vs. ExPASy TrEMBL
Match: A0A2P5BH77 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_239400 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 10  ELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLE-GVEVLDDLG 69
           E++E++VELGL  + L LEV DDAVAAA+GV GA VGLEDDG HG+ L + GVE+ DDLG
Sbjct: 43  EMLENEVELGLGEVNLALEVLDDAVAAANGVGGAGVGLEDDGAHGVVLGDGGVELPDDLG 102

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAVRGALPALV A  A L
Sbjct: 103 DVADAEELVRVEELPLRVVGEVRGENAVRGALPALVLACSASL 145

[Close]

BLAST of Moc09g02260 vs. ExPASy TrEMBL
Match: A0A2P5FEG2 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080840 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 6.2e-22
Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 10  ELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFL-LEGVEVLDDLG 69
           E++ED+VELGL  + L LEV DDAVAAA+GV GA VGLEDDG HG+     GVE+ DDLG
Sbjct: 45  EMLEDEVELGLGEVNLALEVLDDAVAAANGVGGARVGLEDDGAHGVVPGGGGVELPDDLG 104

Query: 70  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGL 112
           DVADAEELV V+EL L VVGEV G+NAV G LPALV A  A L
Sbjct: 105 DVADAEELVRVEELPLRVVGEVRGQNAVGGTLPALVLACSASL 147

[Close]

BLAST of Moc09g02260 vs. ExPASy TrEMBL
Match: A5B4B4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031739 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 7   ADGELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDD 66
           A G+++ED VEL L +L L LEV DD VA ADGV GADV LE+DG HGL L+  VEV DD
Sbjct: 828 AYGQVMEDKVELRLGVLDLALEVTDDTVATADGVGGADVRLENDGAHGLVLVRRVEVADD 887

Query: 67  LGDVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG 113
           LGDVAD ++ + V+ELAL  V ++ G+NAVRGA   LVFA  A LG
Sbjct: 888 LGDVADPKQFMAVEELALATVRKIRGENAVRGAFSTLVFASLASLG 933

[Close]

BLAST of Moc09g02260 vs. ExPASy TrEMBL
Match: A0A484N7F6 (Integrase_H2C2 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38585 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.8e-21
Identity = 69/128 (53.91%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 9   GELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDDLG 68
           G+++ D+VELGL+++ L LEVADD VAA D V+ +++G +DDG HGL L+E  +  +DLG
Sbjct: 130 GDVMVDEVELGLSLVDLVLEVADDGVAATDRVDCSNIGFKDDGAHGLVLVERAKRTNDLG 189

Query: 69  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLG---------GGGGRR- 127
           D+AD E+LVGV ELAL VVGE+ G++A+RGAL ALV    AGLG         G GGR  
Sbjct: 190 DIADTEQLVGVLELALAVVGEIGGEDAIRGALSALVLTSRAGLGATAVAVVVVGPGGRND 249

[Close]

BLAST of Moc09g02260 vs. ExPASy TrEMBL
Match: A0A484M227 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24423 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 9   GELVEDDVELGLAILYLTLEVADDAVAAADGVEGADVGLEDDGTHGLFLLEGVEVLDDLG 68
           G+++ D+VELGL+++ L LEVADD VAA D V+ +++G +DDG HGL L+E  +  +DLG
Sbjct: 32  GDVMVDEVELGLSLVDLVLEVADDGVAATDRVDCSNIGFKDDGAHGLVLVERAKRTNDLG 91

Query: 69  DVADAEELVGVQELALPVVGEVWGKNAVRGALPALVFAGGAGLGGGGGRRRVGSAVVV 127
           D+AD E+LVGV EL L VVGE+ G++A+RGAL ALV    AGLG        G+ VVV
Sbjct: 92  DIADTEQLVGVLELVLAVVGEIGGEDAIRGALSALVLTSRAGLGAA----TAGAVVVV 145

The following BLAST results are available for this feature:

BLAST of Moc09g02260 vs. NCBI nr


Match Name	E-value	Identity	Description
PON48152.1	1.1e-23	69.90	hypothetical protein PanWU01x14_239400 [Parasponia andersonii]	[more]
PON96154.1	1.3e-21	67.96	hypothetical protein TorRG33x02_080840 [Trema orientale]	[more]
VFQ96809.1	3.7e-21	53.91	unnamed protein product [Cuscuta campestris]	[more]
CAN78640.1	3.7e-21	60.38	hypothetical protein VITISV_031739 [Vitis vinifera]	[more]
VFQ82647.1	1.4e-20	53.39	unnamed protein product [Cuscuta campestris]	[more]

BLAST of Moc09g02260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g02260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BH77	5.1e-24	69.90	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_239400 PE...	[more]
A0A2P5FEG2	6.2e-22	67.96	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080840 PE=4 SV...	[more]
A5B4B4	1.8e-21	60.38	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_031739 PE=4 SV=1	[more]
A0A484N7F6	1.8e-21	53.91	Integrase_H2C2 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM...	[more]
A0A484M227	6.9e-21	53.39	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24423 PE=4 ...	[more]

BLAST of Moc09g02260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g02260.1	Moc09g02260.1	mRNA