Moc08g41370 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g41370
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr8: 31710052 .. 31711349 (-)
RNA-Seq Expression	Moc08g41370
Synteny	Moc08g41370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGGCGCTCCAGAATCTTCATGGATGGACCCCATCGCGAACTTCATTAGGGGCAACTCACCACAAGATCCCAAGGAGCGCAGAAAGTTGGCATGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGTGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCATGTACGTCCTCAGAGAGATCCACGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGATCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACGGAACCATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAATGGGGGTGGATATTATTGGTCCTTTCCCTTTGGGCAAGGGCCAGACCAAGTTCGCTGTGGTTGCTGTGGATTACTTCACCAAGTGGGTCGAGGCCGAGGCGCTCTCCCAGATAACGGAATCCAGAGTCACGTCCTTCGTATGGACGAATATCATATGTCGCTTTGGTATACCACAGGCCATAGTGACAGACAATGGGAAGCAGTTTGACAACGCCAAGTTCAAAGACTTTTGCAGCAAACTTAGCATAAGTCATCTCAGCTCGTCCCCCGCACATCCGCAAGCAAATGGGCAGGTGGAGGCAGTCAACAAGATCATCAAGCGAGGCATCAAACTTAGACTGGACTCCAAGAAAGGCAGGTGGGCCGAGGAGCTACCAGAGGTTCTATGGTCGTACCGGACCACCCAACGAGAGTCGACGGGTGAGACCCCGTTCTCCCTGGCCTTTGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTAGAGCATTACGAACCTACGACAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAACGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGAATGGCCAGACATTACAATGCCCGCGTACGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACACATGTAGGTGCCCTCGATCCGGCCTGGGAGGGCCCGTTTGAGATCAAGGGCATCGTCCGACCTGGGACGTACATATTGGCCGACCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGCTATTATCCTTGAAATGCCAAAAGGATTTTCAATGACTCTGTAAAGACTGTTCCAAAAGAATTATGA

mRNA sequence

ATGGAGATCGGCGCTCCAGAATCTTCATGGATGGACCCCATCGCGAACTTCATTAGGGGCAACTCACCACAAGATCCCAAGGAGCGCAGAAAGTTGGCATGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGTGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCATGATTTTCAATGACTCTGTAAAGACTGTTCCAAAAGAATTATGA

Coding sequence (CDS)

ATGGAGATCGGCGCTCCAGAATCTTCATGGATGGACCCCATCGCGAACTTCATTAGGGGCAACTCACCACAAGATCCCAAGGAGCGCAGAAAGTTGGCATGGCGGGCAGCTCGGTTCGTGGTCCGAGATGGTGCATTGTACCGACGTGGCTTTTCCCTGCCTCTATTGAGATGCCTAACCCCTGAAGAGGGCATGATTTTCAATGACTCTGTAAAGACTGTTCCAAAAGAATTATGA

Protein sequence

MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLTPEEGMIFNDSVKTVPKEL

Homology

[Close]

BLAST of Moc08g41370 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIA+FIRGNSPQDPKERRKLAWR ARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGM 66
           PEEG+
Sbjct: 256 PEEGL 260

[Close]

BLAST of Moc08g41370 vs. NCBI nr
Match: XP_022143486.1 (uncharacterized protein LOC111013362 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 2.7e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIA+FIRGNSPQDPKERRKLA RAARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGM 66
           PEEG+
Sbjct: 310 PEEGL 314

[Close]

BLAST of Moc08g41370 vs. NCBI nr
Match: XP_022158520.1 (uncharacterized protein LOC111024991 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWM+PI +FI+GNSPQDPKERRKLA RAARFV+RDGALYRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGM 66
           PEEG+
Sbjct: 300 PEEGL 304

[Close]

BLAST of Moc08g41370 vs. NCBI nr
Match: XP_022136647.1 (uncharacterized protein LOC111008302 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 1.5e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIA+FIRGNSPQDPKERRKLA RAARFVVR  ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGM 66
           PEEG+
Sbjct: 352 PEEGL 356

[Close]

BLAST of Moc08g41370 vs. NCBI nr
Match: XP_022158854.1 (uncharacterized protein LOC111025319 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMD IA+FIRGNSPQDPKERRKLA RAARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDLIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGM 66
            EEG+
Sbjct: 310 AEEGL 314

[Close]

BLAST of Moc08g41370 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.0e-29
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIA+FIRGNSPQDPKERRKLAWR ARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 196 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGALYRRGFSLPLLRCLT 255

Query: 61  PEEGM 66
           PEEG+
Sbjct: 256 PEEGL 260

[Close]

BLAST of Moc08g41370 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIA+FIRGNSPQDPKERRKLA RAARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGM 66
           PEEG+
Sbjct: 310 PEEGL 314

[Close]

BLAST of Moc08g41370 vs. ExPASy TrEMBL
Match: A0A6J1C617 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.2e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMDPIA+FIRGNSPQDPKERRKLA RAARFVVR  ALYRRGFSLPLLRCLT
Sbjct: 292 MEIGAPESSWMDPIADFIRGNSPQDPKERRKLARRAARFVVRGEALYRRGFSLPLLRCLT 351

Query: 61  PEEGM 66
           PEEG+
Sbjct: 352 PEEGL 356

[Close]

BLAST of Moc08g41370 vs. ExPASy TrEMBL
Match: A0A6J1DW30 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.2e-26
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWM+PI +FI+GNSPQDPKERRKLA RAARFV+RDGALYRRGFSLPLL+CLT
Sbjct: 240 MEIGAPESSWMEPITDFIKGNSPQDPKERRKLARRAARFVIRDGALYRRGFSLPLLKCLT 299

Query: 61  PEEGM 66
           PEEG+
Sbjct: 300 PEEGL 304

[Close]

BLAST of Moc08g41370 vs. ExPASy TrEMBL
Match: A0A6J1E0M8 (uncharacterized protein LOC111025319 OS=Momordica charantia OX=3673 GN=LOC111025319 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MEIGAPESSWMDPIANFIRGNSPQDPKERRKLAWRAARFVVRDGALYRRGFSLPLLRCLT 60
           MEIGAPESSWMD IA+FIRGNSPQDPKERRKLA RAARFVVRDGALYRRGFSLPLLRCLT
Sbjct: 250 MEIGAPESSWMDLIADFIRGNSPQDPKERRKLARRAARFVVRDGALYRRGFSLPLLRCLT 309

Query: 61  PEEGM 66
            EEG+
Sbjct: 310 AEEGL 314

The following BLAST results are available for this feature:

BLAST of Moc08g41370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158219.1	1.9e-28	95.38	protein NYNRIN-like [Momordica charantia]	[more]
XP_022143486.1	2.7e-27	95.38	uncharacterized protein LOC111013362 [Momordica charantia]	[more]
XP_022158520.1	1.5e-25	87.69	uncharacterized protein LOC111024991 [Momordica charantia]	[more]
XP_022136647.1	1.5e-25	92.31	uncharacterized protein LOC111008302 [Momordica charantia]	[more]
XP_022158854.1	3.3e-25	92.31	uncharacterized protein LOC111025319 [Momordica charantia]	[more]

BLAST of Moc08g41370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g41370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYS0	9.0e-29	95.38	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1	[more]
A0A6J1CQD7	1.3e-27	95.38	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1	[more]
A0A6J1C617	7.2e-26	92.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111008302 PE=4 SV=1	[more]
A0A6J1DW30	7.2e-26	87.69	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024991 PE=4 SV=1	[more]
A0A6J1E0M8	1.6e-25	92.31	uncharacterized protein LOC111025319 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc08g41370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g41370.1	Moc08g41370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity