Moc08g40140 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g40140
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related pol polyprotein from transposon TNT 1-94
Location	chr8: 30755278 .. 30756950 (+)
RNA-Seq Expression	Moc08g40140
Synteny	Moc08g40140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGAAGATTGGGTGGAGATGAATGAACAGGCAGTTGCCTCTATCATATTGTGTTTATCGATGAATGTGGCAAGTCTCGTAGCAAATGAAACGACAGCAATAGATCTGATGAAAACACTTGAGAATAGGTACGAAAAACCCTCAGCTAATAATAAGGTATATCTCGTAAGAAGATTCTTTAACATTCAAATGGAAGAGAATACTTTTGTCAATTCCCACATAAATGAAGATCACAAAGTTAGTCAATCAATTGGCATCAGTTAAGATTTCTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACAATGAAGACAACAGTGTCCAATTCGTTAGGCGACAAATCTTTGAAATTTTCAGAATGTGATGTGGCAATTGCTGAAGAAATTCGCAGAAAGGGAAGTGGAAAAGAATCTACTTCCATACAAAGCTCAGCATTGACTGTCGATAAAGGAGAGAAGGTTGCGTCTAATGACAGGCAGCATAAACATAGTATGAGGGATTGGAAGAGAGATGTTGAATGTTTTCATTGCCACAAAAAAGGCCACATCAAGAAAAACGGTAGAATATTAAAAGATGATCTGAAAAGGTAAATGACAAAGTCAAATGCAGTTGTAGACGATGTCATCGTCTGTGTTGAAAGCAATACAAAAACAGGAAACTAGTCATCGGAGTGGGTAATAGACAGCATAGCTTTAGTACACATATCTTCAAATAGAAGATTATTTACATCATTCAGAAGAGGCAATCGCGGCCACGTGAGGATGGGGAATGGAAGACTTTTCAAGACTAAAAGGATTGGAAATATACGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCGAGATGTCAAGTATGTACCCAGTATCAGAATGAACCTTATCTCTACAGTTAAGTTGGAGGATGATGGTTATCAGAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAATGAACCAAGTTGGTGGCAGTTGGTCATAGAAGATCTACAGTTTACACATCGCAATTGAGTGTTGCCAGGATCATTGAAACAATGGATGCAAGTTGCAAATGGTGTCCAAAGAAGTAGGACTGAACCAGCAACAAAGACAACCAGAACAGATCAGGAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGAGAATATGTTTTTTAGGTTGTCAGGGATTATCCCCAGTTGTTAGACGAATGAGTGAATTAATGAAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGAACCCAGTAGGTGTTGAGGTAAATAATGGAGTTTAAATTCTGCCAGAAAACTTGAATAGAGTTGTCAAGTCATCAGTGGGAAGTTCTTTCTTCAAGAATCAGTGCTTGAGAACGAAGAAGGAAGCTTCAGATATCACCAACTTAGTTTGAGTGGGAGCATGTGGCTGTGTCTCTTGACCACGTAGATTGCCCGACCTCAGGGCAAAGACAGATGAGATTGGTGATTTCTGACATTTTGTTTTACAAGTTTCTAAACTTTCAGGAGAAGCTTTGAAGATTTTTTCAAGAAGAACAGAAGTTGTTGTAGAAGAAGCCTTGCAGTTTTCCAAGATTATCAGATACTATTGTTGCAGTGGGAGGCAAGATCAATATTTTGTCTCCAAGTAG

mRNA sequence

ATGAAAGATGAAGATTGGGTGGAGATGAATGAACAGGCAGTTGCCTCTATCATATTGTGTTTATCGATGAATGTGGCAAGTCTCGTAGCAAATGAAACGACAGCAATAGATCTGATGAAAACACTTGAGAATAGGTACGAAAAACCCTCAGCTAATAATAAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACAATGAAGACAACAGTGTCCAATTCGTTAGGCGACAAATCTTTGAAATTTTCAGAATGTGATGTGGCAATTGCTGAAGAAATTCGCAGAAAGGGAAGTGGAAAAGAATCTACTTCCATACAAAGCTCAGCATTGACTGTCGATAAAGGAGAGAAGGTTGCGTCTAATGACAGGCAGCATAAACATAGATCATTGAAACAATGGATGCAAGTTGCAAATGGTGTCCAAAGAAGTAGGACTGAACCAGCAACAAAGACAACCAGAACAGATCAGGAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGAGAATATGTTTTTTAGGTTGTCAGGGATTATCCCCAGTTGTTAGACGAATGAGTGAATTAATGAAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGAACCCAGTAGGAGAAGCTTTGAAGATTTTTTCAAGAAGAACAGAAGTTGTTGTAGAAGAAGCCTTGCAGTTTTCCAAGATTATCAGATACTATTGTTGCAGTGGGAGGCAAGATCAATATTTTGTCTCCAAGTAG

Coding sequence (CDS)

ATGAAAGATGAAGATTGGGTGGAGATGAATGAACAGGCAGTTGCCTCTATCATATTGTGTTTATCGATGAATGTGGCAAGTCTCGTAGCAAATGAAACGACAGCAATAGATCTGATGAAAACACTTGAGAATAGGTACGAAAAACCCTCAGCTAATAATAAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACAATGAAGACAACAGTGTCCAATTCGTTAGGCGACAAATCTTTGAAATTTTCAGAATGTGATGTGGCAATTGCTGAAGAAATTCGCAGAAAGGGAAGTGGAAAAGAATCTACTTCCATACAAAGCTCAGCATTGACTGTCGATAAAGGAGAGAAGGTTGCGTCTAATGACAGGCAGCATAAACATAGATCATTGAAACAATGGATGCAAGTTGCAAATGGTGTCCAAAGAAGTAGGACTGAACCAGCAACAAAGACAACCAGAACAGATCAGGAGGATCTGCCATCAATTCAGGAACAACAATTGGGAAGTCAAAGAACGAGAATATGTTTTTTAGGTTGTCAGGGATTATCCCCAGTTGTTAGACGAATGAGTGAATTAATGAAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGAACCCAGTAGGAGAAGCTTTGAAGATTTTTTCAAGAAGAACAGAAGTTGTTGTAGAAGAAGCCTTGCAGTTTTCCAAGATTATCAGATACTATTGTTGCAGTGGGAGGCAAGATCAATATTTTGTCTCCAAGTAG

Protein sequence

MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNKLLTSLPESWETMKTTVSNSLGDKSLKFSECDVAIAEEIRRKGSGKESTSIQSSALTVDKGEKVASNDRQHKHRSLKQWMQVANGVQRSRTEPATKTTRTDQEDLPSIQEQQLGSQRTRICFLGCQGLSPVVRRMSELMKSRQRTVASEKMNPVGEALKIFSRRTEVVVEEALQFSKIIRYYCCSGRQDQYFVSK

Homology

[Close]

BLAST of Moc08g40140 vs. NCBI nr
Match: XP_022138046.1 (kirola-like [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-14
Identity = 68/145 (46.90%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 66  MKTTVSNSLGDKSLKFSE-CDVAIAEEIRRKGSGKESTSIQSSALTVDKG-EKVASNDRQ 125
           MKT VSNSLGDKSLKFSE CD AIAEEIRRK SGKE TS+Q SAL V+KG EKVAS+D  
Sbjct: 1   MKTAVSNSLGDKSLKFSEICDAAIAEEIRRKRSGKEYTSLQGSALAVEKGKEKVASDD-- 60

Query: 126 HKHRSLKQWMQVANGVQRSRTEPATKTTRTDQEDLPSIQEQQLGSQRTRICFLGCQGLSP 185
                                                                       
Sbjct: 61  ------------------------------------------------------------ 81

Query: 186 VVRRMSELMKSRQRTVASEKMNPVG 209
             RRM ELMKSRQ+TVASEKMNPVG
Sbjct: 121 --RRMGELMKSRQQTVASEKMNPVG 81

[Close]

BLAST of Moc08g40140 vs. NCBI nr
Match: VFQ62075.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-12
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK---LLT 60
           M +E W   + QA+  I L L+ NVA  +  E T   L+K L N YEKPSA NK   LL+
Sbjct: 44  MTEEQWKLKDRQALGMIWLTLTKNVAFNIVKENTTAGLLKALSNMYEKPSAMNKALILLS 103

Query: 61  SLPESWETMKTTVSNSLGDKSLKFSEC-DVAIAEEIRRKGSGKESTSIQSSALTVD-KGE 120
           S+PESW+T+   +S+S G + LKF E  DV ++E IR++  G  S     SAL+VD +G 
Sbjct: 104 SMPESWDTVVAAISSSRGSEKLKFDEIHDVVLSESIRKREMGDSS----GSALSVDRRGR 163

Query: 121 KVASNDRQH 125
                  QH
Sbjct: 164 SKFKGQHQH 168

[Close]

BLAST of Moc08g40140 vs. NCBI nr
Match: MCI04652.1 (retrovirus-related pol polyprotein from transposon TNT 1-94 [Trifolium medium])

HSP 1 Score: 82.0 bits (201), Expect = 7.8e-12
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK------ 60
           MKD++W  +N +A+  I L LS N+A  +A E T   LM  L + YEKPSA+NK      
Sbjct: 70  MKDDEWKLVNREALGVIRLSLSRNIAFNIAKEKTTASLMAALTSMYEKPSASNKVHLMRQ 129

Query: 61  --LLTSLPESWETMKTTVSNSLGDKSLKFSEC-DVAIAEEIRRKGSGKESTS 104
             LL+SLP+SW    T VS S G K LKF +  D+ ++EEI R+  G+ S+S
Sbjct: 130 LILLSSLPDSWSATVTAVSCSSGSKKLKFDDVRDLVLSEEIHRRELGESSSS 181

[Close]

BLAST of Moc08g40140 vs. NCBI nr
Match: GEW38607.1 (retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerariifolium])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-11
Identity = 59/146 (40.41%), Postives = 77/146 (52.74%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANN------- 60
           MK EDW  ++ QA+ +I L L+ NVA  + NE T  DL K L N YEKPSA+        
Sbjct: 24  MKAEDWTLLDRQALGAIRLSLAKNVAYNIVNEKTTYDLFKALSNMYEKPSASKVDIKFDD 83

Query: 61  -----KLLTSLPESWETMKTTVSNSLGDKSLKFSE-CDVAIAEEIRRKGSGKESTSIQSS 120
                 LL+SLP+SW    T +S S G   LKF   C +   E+I RK SG+ S S+ S+
Sbjct: 84  EVQALLLLSSLPDSWSGTVTAISGSTGSTKLKFDNICGLIHGEDICRKTSGEYSNSLLSA 143

Query: 121 ALTVDKGEKVASNDRQHKHRSLKQWM 134
               DKG +    DR HK   ++  M
Sbjct: 144 E---DKG-RGRKQDRGHKQNIVETMM 165

[Close]

BLAST of Moc08g40140 vs. NCBI nr
Match: RVW17179.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-11
Identity = 56/159 (35.22%), Postives = 74/159 (46.54%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK------ 60
           MK E+W  ++ Q +  I L LS +VA  V  E T  DLMK L   YEKPSANNK      
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSKSVAHNVVKEKTTTDLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  -----------------------------------------LLTSLPESWETMKTTVSNS 113
                                                    +L SLP SWE M+  VSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

[Close]

BLAST of Moc08g40140 vs. ExPASy TrEMBL
Match: A0A6J1C8L4 (kirola-like OS=Momordica charantia OX=3673 GN=LOC111009302 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 68/145 (46.90%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 66  MKTTVSNSLGDKSLKFSE-CDVAIAEEIRRKGSGKESTSIQSSALTVDKG-EKVASNDRQ 125
           MKT VSNSLGDKSLKFSE CD AIAEEIRRK SGKE TS+Q SAL V+KG EKVAS+D  
Sbjct: 1   MKTAVSNSLGDKSLKFSEICDAAIAEEIRRKRSGKEYTSLQGSALAVEKGKEKVASDD-- 60

Query: 126 HKHRSLKQWMQVANGVQRSRTEPATKTTRTDQEDLPSIQEQQLGSQRTRICFLGCQGLSP 185
                                                                       
Sbjct: 61  ------------------------------------------------------------ 81

Query: 186 VVRRMSELMKSRQRTVASEKMNPVG 209
             RRM ELMKSRQ+TVASEKMNPVG
Sbjct: 121 --RRMGELMKSRQQTVASEKMNPVG 81

[Close]

BLAST of Moc08g40140 vs. ExPASy TrEMBL
Match: A0A484KC47 (CCHC-type domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS3851 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK---LLT 60
           M +E W   + QA+  I L L+ NVA  +  E T   L+K L N YEKPSA NK   LL+
Sbjct: 44  MTEEQWKLKDRQALGMIWLTLTKNVAFNIVKENTTAGLLKALSNMYEKPSAMNKALILLS 103

Query: 61  SLPESWETMKTTVSNSLGDKSLKFSEC-DVAIAEEIRRKGSGKESTSIQSSALTVD-KGE 120
           S+PESW+T+   +S+S G + LKF E  DV ++E IR++  G  S     SAL+VD +G 
Sbjct: 104 SMPESWDTVVAAISSSRGSEKLKFDEIHDVVLSESIRKREMGDSS----GSALSVDRRGR 163

Query: 121 KVASNDRQH 125
                  QH
Sbjct: 164 SKFKGQHQH 168

[Close]

BLAST of Moc08g40140 vs. ExPASy TrEMBL
Match: A0A392NYV0 (Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0025699 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 50/112 (44.64%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK------ 60
           MKD++W  +N +A+  I L LS N+A  +A E T   LM  L + YEKPSA+NK      
Sbjct: 70  MKDDEWKLVNREALGVIRLSLSRNIAFNIAKEKTTASLMAALTSMYEKPSASNKVHLMRQ 129

Query: 61  --LLTSLPESWETMKTTVSNSLGDKSLKFSEC-DVAIAEEIRRKGSGKESTS 104
             LL+SLP+SW    T VS S G K LKF +  D+ ++EEI R+  G+ S+S
Sbjct: 130 LILLSSLPDSWSATVTAVSCSSGSKKLKFDDVRDLVLSEEIHRRELGESSSS 181

[Close]

BLAST of Moc08g40140 vs. ExPASy TrEMBL
Match: A0A438C1R6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2961 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11
Identity = 56/159 (35.22%), Postives = 74/159 (46.54%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK------ 60
           MK E+W  ++ Q +  I L LS +VA  V  E T  DLMK L   YEKPSANNK      
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSKSVAHNVVKEKTTTDLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  -----------------------------------------LLTSLPESWETMKTTVSNS 113
                                                    +L SLP SWE M+  VSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

[Close]

BLAST of Moc08g40140 vs. ExPASy TrEMBL
Match: A5AKY6 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_034722 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-11
Identity = 57/160 (35.62%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 1   MKDEDWVEMNEQAVASIILCLSMNVASLVANETTAIDLMKTLENRYEKPSANNK------ 60
           MK E+W  ++ Q +  I L LS +VA  + NE T  DLMK L   YEKPSANNK      
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNIVNEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  -----------------------------------------LLTSLPESWETMKTTVSNS 113
                                                    +L SLP SWE M+ TVSNS
Sbjct: 107 LFNLNMVENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEVMRMTVSNS 166

The following BLAST results are available for this feature:

BLAST of Moc08g40140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138046.1	2.2e-14	46.90	kirola-like [Momordica charantia]	[more]
VFQ62075.1	3.5e-12	42.64	unnamed protein product [Cuscuta campestris]	[more]
MCI04652.1	7.8e-12	44.64	retrovirus-related pol polyprotein from transposon TNT 1-94 [Trifolium medium]	[more]
GEW38607.1	1.0e-11	40.41	retrovirus-related Pol polyprotein from transposon TNT 1-94 [Tanacetum cinerarii...	[more]
RVW17179.1	6.6e-11	35.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc08g40140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g40140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8L4	1.1e-14	46.90	kirola-like OS=Momordica charantia OX=3673 GN=LOC111009302 PE=3 SV=1	[more]
A0A484KC47	1.7e-12	42.64	CCHC-type domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCU...	[more]
A0A392NYV0	3.8e-12	44.64	Retrovirus-related pol polyprotein from transposon TNT 1-94 (Fragment) OS=Trifol...	[more]
A0A438C1R6	3.2e-11	35.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5AKY6	5.4e-11	35.63	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]

BLAST of Moc08g40140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..158
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 55..133
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..54
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 1..54
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 55..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g40140.1	Moc08g40140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding