Moc08g39920 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g39920
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA repair protein XRCC3 homolog
Location	chr8: 30552645 .. 30553532 (+)
RNA-Seq Expression	Moc08g39920
Synteny	Moc08g39920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCGGAAAATCTCCTCCATCTTCTTCAATCCTCCCAGAAGTGCACTTTCGGATGTCCGATCCTCGACCGCTGCGCCGGCGGCGGCGTCCCCTGCAATTCCCTCACCGAAATCGTCGCTGAGAGCGGCTCCGGCAAGACCCAACTCTGCCTCCAACTCTCCCTCTGCGCCCAGCTCCCCCTCTCCAATGGCGGCCTTAATGCCTCCTCTCTCTACATCCACACCGAGTTCCCTTTCCCTCTCCGCCGTCTCCAGCAGCTTTCCCGCGCATTTTGTTCCTCTTACCCCCAATTCTCCAACACAAACCCCTCCGATCATATTTTTGTGGAGGCCGTTCACTCCGCCGACCAACTGTTCGACATAATGCCCAAGATAGAATCGTTTCTTGCCAATCGCGATTCGCAGTTTCCCACCAGGCTTATTGTGATCGATTCGATCGCGGCGTTGTTTCGGTCTGATTTCGAGAACACCCCGTCCGATCTCAAGCGAAGATCGGCTCTGTTTTTCAAGATTTCTGGGAAATTGAAGTTGCTGGCAAAGAGGTATTCTTTGGCCGTGGTGTTGACGAACCAGGTGGTCGATTTGATGGGTTCTTCTGATGGGATAAATGCTATGAGAATTGGGAATTTGAGGTATCTTTGTTCGTCGGGAAGACAGGTTTGCCCCGCGCTCGGGCTTGCGTGGGCTAATTGTGTTAATTCAAGATTGTTTTTGTCAAGAAATGAGGAAGTTATTCAAGAGGGCAATAGCATGATAAATGGCAGTGAAGTAGCTCAAAGAAAAACTAGAAGGTGGCTTCATGTTGTTTTCTCACCCCATTTGCCTAAATCATCTTGTGAGTACATAATCAGTAGAGAAGGAGTTGTAGGAGTTGAAAGCCAGTGA

mRNA sequence

ATGACACCGGAAAATCTCCTCCATCTTCTTCAATCCTCCCAGAAGTGCACTTTCGGATGTCCGATCCTCGACCGCTGCGCCGGCGGCGGCGTCCCCTGCAATTCCCTCACCGAAATCGTCGCTGAGAGCGGCTCCGGCAAGACCCAACTCTGCCTCCAACTCTCCCTCTGCGCCCAGCTCCCCCTCTCCAATGGCGGCCTTAATGCCTCCTCTCTCTACATCCACACCGAGTTCCCTTTCCCTCTCCGCCGTCTCCAGCAGCTTTCCCGCGCATTTTGTTCCTCTTACCCCCAATTCTCCAACACAAACCCCTCCGATCATATTTTTGTGGAGGCCGTTCACTCCGCCGACCAACTGTTCGACATAATGCCCAAGATAGAATCGTTTCTTGCCAATCGCGATTCGCAGTTTCCCACCAGGCTTATTGTGATCGATTCGATCGCGGCGTTGTTTCGGTCTGATTTCGAGAACACCCCGTCCGATCTCAAGCGAAGATCGGCTCTGTTTTTCAAGATTTCTGGGAAATTGAAGTTGCTGGCAAAGAGGTATTCTTTGGCCGTGGTGTTGACGAACCAGGTGGTCGATTTGATGGGTTCTTCTGATGGGATAAATGCTATGAGAATTGGGAATTTGAGGTATCTTTGTTCGTCGGGAAGACAGGTTTGCCCCGCGCTCGGGCTTGCGTGGGCTAATTGTGTTAATTCAAGATTGTTTTTGTCAAGAAATGAGGAAGTTATTCAAGAGGGCAATAGCATGATAAATGGCAGTGAAGTAGCTCAAAGAAAAACTAGAAGGTGGCTTCATGTTGTTTTCTCACCCCATTTGCCTAAATCATCTTGTGAGTACATAATCAGTAGAGAAGGAGTTGTAGGAGTTGAAAGCCAGTGA

Coding sequence (CDS)

ATGACACCGGAAAATCTCCTCCATCTTCTTCAATCCTCCCAGAAGTGCACTTTCGGATGTCCGATCCTCGACCGCTGCGCCGGCGGCGGCGTCCCCTGCAATTCCCTCACCGAAATCGTCGCTGAGAGCGGCTCCGGCAAGACCCAACTCTGCCTCCAACTCTCCCTCTGCGCCCAGCTCCCCCTCTCCAATGGCGGCCTTAATGCCTCCTCTCTCTACATCCACACCGAGTTCCCTTTCCCTCTCCGCCGTCTCCAGCAGCTTTCCCGCGCATTTTGTTCCTCTTACCCCCAATTCTCCAACACAAACCCCTCCGATCATATTTTTGTGGAGGCCGTTCACTCCGCCGACCAACTGTTCGACATAATGCCCAAGATAGAATCGTTTCTTGCCAATCGCGATTCGCAGTTTCCCACCAGGCTTATTGTGATCGATTCGATCGCGGCGTTGTTTCGGTCTGATTTCGAGAACACCCCGTCCGATCTCAAGCGAAGATCGGCTCTGTTTTTCAAGATTTCTGGGAAATTGAAGTTGCTGGCAAAGAGGTATTCTTTGGCCGTGGTGTTGACGAACCAGGTGGTCGATTTGATGGGTTCTTCTGATGGGATAAATGCTATGAGAATTGGGAATTTGAGGTATCTTTGTTCGTCGGGAAGACAGGTTTGCCCCGCGCTCGGGCTTGCGTGGGCTAATTGTGTTAATTCAAGATTGTTTTTGTCAAGAAATGAGGAAGTTATTCAAGAGGGCAATAGCATGATAAATGGCAGTGAAGTAGCTCAAAGAAAAACTAGAAGGTGGCTTCATGTTGTTTTCTCACCCCATTTGCCTAAATCATCTTGTGAGTACATAATCAGTAGAGAAGGAGTTGTAGGAGTTGAAAGCCAGTGA

Protein sequence

MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLFDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ

Homology

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BLAST of Moc08g39920 vs. NCBI nr
Match: XP_022153353.1 (DNA repair protein XRCC3 homolog [Momordica charantia])

HSP 1 Score: 590.5 bits (1521), Expect = 8.0e-165
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVE VHSADQLF
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEXVHSADQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS
Sbjct: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ
Sbjct: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 295

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BLAST of Moc08g39920 vs. NCBI nr
Match: XP_038890688.1 (DNA repair protein XRCC3 homolog [Benincasa hispida])

HSP 1 Score: 512.3 bits (1318), Expect = 2.8e-141
Identity = 253/295 (85.76%), Postives = 275/295 (93.22%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCPI+DR AGGGV C+SLTEIVAESG GKTQLCLQLSL AQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSAGGGVACSSLTEIVAESGCGKTQLCLQLSLYAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLSNGGLNASSLYIHTEFPFP RRLQQLS+AF SSYPQFS  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--NPSDHIFVEPVHSAHQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFL N +SQ P RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLKNSNSQLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSL VVLTNQVVDL+GSSDG+NA+RIGNL++L SSGRQVCPALGLAWANCVN+RLFLS
Sbjct: 181 KRYSLGVVLTNQVVDLIGSSDGLNALRIGNLKFLSSSGRQVCPALGLAWANCVNTRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEE++ EG  M+NGSE+ QR+TRRWLHVVF+PHLPKSSCEY+I+REGVVGVESQ
Sbjct: 241 RNEEIVGEGEGMMNGSELVQRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 293

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BLAST of Moc08g39920 vs. NCBI nr
Match: XP_004150781.1 (DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical protein Csa_021163 [Cucumis sativus])

HSP 1 Score: 511.5 bits (1316), Expect = 4.7e-141
Identity = 255/296 (86.15%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCPI+DR  GGGV C+SLTEIVAESG GKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLSNGGLNASSLYIHTEFPFP RRLQQLS+AF SSYPQFS  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--NPSDHIFVEPVHSAHQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIES L NR+SQ P RLIVIDSIAALFRSDF NTPSDLKRRS+LFFKISGKLKLLA
Sbjct: 121 DIMPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           K+YSLAVVLTNQVVDLMGSSDG+NA+RIGNL++LCSS R+VCPALGLAWANCVNSRLFLS
Sbjct: 181 KKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQ-RKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEV+ EG  M+NGSE+ Q R+TRRWLHVVF+PHLPKSSCEY+I+REGVVGVESQ
Sbjct: 241 RNEEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

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BLAST of Moc08g39920 vs. NCBI nr
Match: KAG7020901.1 (DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 510.4 bits (1313), Expect = 1.1e-140
Identity = 252/295 (85.42%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCPI+DR  GGGV CNSLTEIV+ESG GKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLS GGLNA+SLYIHTEFPFP RRLQQLS+AF SSYPQ S  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSLGGLNAASLYIHTEFPFPFRRLQQLSQAFSSSYPQIS--NPSDHIFVEPVHSAQQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLANRDS  PTRLIVIDSIAALFRSDF+NTPSDLKRRSALFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSLAVVLTNQVVDLM SSDGINA+RIGNL+ LCSSGR+VCPALG+AWANCVNSRLFLS
Sbjct: 181 KRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEV+ EG+ ++N  E+AQR+TRRWLHVVF+PHLPKSSCEY+I+R+GVVGVESQ
Sbjct: 241 RNEEVVGEGDGVVNSGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Moc08g39920 vs. NCBI nr
Match: XP_022938282.1 (DNA repair protein XRCC3 homolog [Cucurbita moschata])

HSP 1 Score: 510.4 bits (1313), Expect = 1.1e-140
Identity = 252/295 (85.42%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCPI+DR  GGGV CNSLTEIV+ESG GKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLS GGL A+SLYIHTEFPFP RRLQQLS+AF SSYPQ S  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQIS--NPSDHIFVEPVHSAQQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLANRDS  PTRLIVIDSIAALFRSDF+NTPSDLKRRSALFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSLAVVLTNQVVDLM SSDGINA+RIGNL+ LCSSGR+VCPALG+AWANCVNSRLFLS
Sbjct: 181 KRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEV+ EG+ ++NG E+AQR+TRRWLHVVF+PHLPKSSCEY+I+R+GVVGVESQ
Sbjct: 241 RNEEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Moc08g39920 vs. ExPASy Swiss-Prot
Match: Q9FKM5 (DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.3e-101
Identity = 183/297 (61.62%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 3   PENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPL 62
           PENLL    +++K T GC ILD C  GG+ C+SLTEIVAESG GKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQF---SNTNPSDHIFVEAVHSADQL 122
           S+GGLN SSLY+H+EFPFP RRL QLS  F  S P      N NP DH+FV+ VHS D L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++FP +LIV+DS+AALFRS+F+NTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDG++ +RIGNLRYL SSGR+V P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEEVIQEGNSM--INGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVES 295
           SR++  I +  S    N S    R  +R L +VFSP+LP SSCE++I+REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Moc08g39920 vs. ExPASy Swiss-Prot
Match: Q9CXE6 (DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.9e-37
Identity = 106/298 (35.57%), Postives = 151/298 (50.67%), Query Frame = 0


Query: 7   LHLLQSS-------QKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQ 66
           LHL Q         Q+ + GCP+LD+  GGG+P   +T +   S +GKTQL LQL L  Q
Sbjct: 66  LHLFQQKESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGCSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPLRRLQQL---SRAFCSSYPQ--FSNTNPSDHIFVEAVH 126
            P   GGL A ++YI TE  FP +RL QL    R   +  P+        S+HIF+E   
Sbjct: 126 FPRQYGGLEAGAVYICTEDAFPSKRLWQLIAQQRRLRTDAPEELIEKIRFSNHIFIEHAA 185

Query: 127 SADQLFDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISG 186
             D L + + K    L +R      RL+V+DSIAA FR +F    S +  R+ L   +  
Sbjct: 186 DVDTLLECVSKKVPILLSRGM---ARLVVVDSIAAPFRCEFHLQASAI--RAKLLLSLGA 245

Query: 187 KLKLLAKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVN 246
            L+ L+  +   V+  NQV D++     ++       R L +S  ++ PALG+ WAN + 
Sbjct: 246 TLRRLSSTFRSPVLCINQVTDMVEDQQSVS-------RSLGASEERLSPALGITWANQLL 305

Query: 247 SRLFLSRNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGV 293
            RL + R  E     + +  G     R   R L V+F+PHLP SSC Y +S EG+ G+
Sbjct: 306 MRLMVDRTHE-----DDVTTG---LPRSPVRTLRVLFAPHLPLSSCCYTVSGEGIRGM 343

[Close]

BLAST of Moc08g39920 vs. ExPASy Swiss-Prot
Match: O43542 (DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-33
Identity = 102/287 (35.54%), Postives = 140/287 (48.78%), Query Frame = 0


Query: 14  QKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSNGGLNASSLY 73
           Q+ + GCP+LD    GG+P + +TE+   S +GKTQL LQL L  Q P  +GGL A ++Y
Sbjct: 80  QRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVY 139

Query: 74  IHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSD---------HIFVEAVHSADQLFDIMP 133
           I TE  FP +RLQQL     +  P+     P +          IF+E V   D L + + 
Sbjct: 140 ICTEDAFPHKRLQQL----MAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVN 199

Query: 134 KIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLAKRYS 193
           K    L +R      RL+VIDS+AA FR +F++  S  + R      +   L+ L+  + 
Sbjct: 200 KKVPVLLSRGM---ARLVVIDSVAAPFRCEFDSQASAPRARH--LQSLGATLRELSSAFQ 259

Query: 194 LAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLSRNEE 253
             V+  NQV + M      +    G L +      +V PALG+ WAN +  RL   R  E
Sbjct: 260 SPVLCINQVTEAMEEQGAAH----GPLGFW---DERVSPALGITWANQLLVRLLADRLRE 319

Query: 254 VIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVG 292
                       E A     R L V+ +PHLP SSC Y IS EGV G
Sbjct: 320 -----------EEAALGCPARTLRVLSAPHLPPSSCSYTISAEGVRG 339

[Close]

BLAST of Moc08g39920 vs. ExPASy Swiss-Prot
Match: Q08DH8 (DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.6e-33
Identity = 103/299 (34.45%), Postives = 143/299 (47.83%), Query Frame = 0


Query: 7   LHLL-------QSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQ 66
           LHLL       +  Q+ + GCP+LD    GG+P + +TE+   S +GKTQL LQL L  Q
Sbjct: 66  LHLLRQEGPFPEQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQ 125

Query: 67  LPLSNGGLNASSLYIHTEFPFPLRRLQQL---SRAFCSSYP--QFSNTNPSDHIFVEAVH 126
           LP  +GGL A ++Y+ TE  FP RRLQQL    +   +  P    S       IF+E   
Sbjct: 126 LPPRHGGLGAGAVYVCTEDAFPSRRLQQLIAQQQRLRADVPGHVISKIRFGHQIFIEHAA 185

Query: 127 SADQLFD-IMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKIS 186
             D L   +  K+   LA    +   RL+VIDS+AA FR +F+   + L  R+     + 
Sbjct: 186 DVDTLLQCVREKVPVLLA----RGMARLVVIDSVAAPFRCEFDG--AALALRAQRLLALG 245

Query: 187 GKLKLLAKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCV 246
            +L+ L+  +   V+  NQV + +   D            L +    + PALG+ WAN +
Sbjct: 246 AELRRLSCAFRSPVLCVNQVTEAVEEQD------------LVAGPPGMSPALGITWANQL 305

Query: 247 NSRLFLSRNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGV 293
             RL   R               E       R L VVF+PHLP SSC Y I+ EGV G+
Sbjct: 306 LVRLLADRQRP-----------EEAPLTPPGRTLRVVFAPHLPASSCSYTIAAEGVRGM 335

[Close]

BLAST of Moc08g39920 vs. ExPASy Swiss-Prot
Match: O35719 (DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 6.9e-26
Identity = 88/276 (31.88%), Postives = 132/276 (47.83%), Query Frame = 0


Query: 23  LDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSNGGLNASSLYIHTEFPFPL 82
           LD    GGVPC SLTEI    G GKTQ C+ +S+ A LP S GGL  + +YI TE  F  
Sbjct: 90  LDEALHGGVPCGSLTEITGPPGCGKTQFCIMMSVLATLPTSLGGLEGAVVYIDTESAFTA 149

Query: 83  RRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF--DIMPKIESFLANRDSQFPTR 142
            RL +++    S +PQ+ NT     +    VH   +L    ++ ++ES L         +
Sbjct: 150 ERLVEIAE---SRFPQYFNTEEKLLLTSSRVHLCRELTCEGLLQRLES-LEEEIISKGVK 209

Query: 143 LIVIDSIAALFRSDFE-NTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVD---- 202
           L+++DSIA++ R +F+     ++K R+    K +  LK LA  +S+ V+LTNQ+      
Sbjct: 210 LVIVDSIASVVRKEFDPKLQGNIKERNKFLGKGASLLKYLAGEFSIPVILTNQITTHLSG 269

Query: 203 -LMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVIQEGNSMIN 262
            L   +D ++     +L    S    +  ALG  W +CVN+RL L   +           
Sbjct: 270 ALPSQADLVSPADDLSLSEGTSGSSCLVAALGNTWGHCVNTRLILQYLD----------- 329

Query: 263 GSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVV 291
                    RR + +  SP    +S  Y I  EG+V
Sbjct: 330 -------SERRQILIAKSPLAAFTSFVYTIKGEGLV 343

[Close]

BLAST of Moc08g39920 vs. ExPASy TrEMBL
Match: A0A6J1DH85 (DNA repair protein XRCC3 homolog OS=Momordica charantia OX=3673 GN=LOC111020868 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 3.9e-165
Identity = 294/295 (99.66%), Postives = 294/295 (99.66%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVE VHSADQLF
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEXVHSADQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS
Sbjct: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ
Sbjct: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 295

[Close]

BLAST of Moc08g39920 vs. ExPASy TrEMBL
Match: A0A0A0LK93 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 2.3e-141
Identity = 255/296 (86.15%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCPI+DR  GGGV C+SLTEIVAESG GKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLSNGGLNASSLYIHTEFPFP RRLQQLS+AF SSYPQFS  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--NPSDHIFVEPVHSAHQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIES L NR+SQ P RLIVIDSIAALFRSDF NTPSDLKRRS+LFFKISGKLKLLA
Sbjct: 121 DIMPKIESSLENRNSQLPIRLIVIDSIAALFRSDFNNTPSDLKRRSSLFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           K+YSLAVVLTNQVVDLMGSSDG+NA+RIGNL++LCSS R+VCPALGLAWANCVNSRLFLS
Sbjct: 181 KKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQ-RKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEV+ EG  M+NGSE+ Q R+TRRWLHVVF+PHLPKSSCEY+I+REGVVGVESQ
Sbjct: 241 RNEEVVGEGEGMMNGSELVQRRRTRRWLHVVFAPHLPKSSCEYVINREGVVGVESQ 294

[Close]

BLAST of Moc08g39920 vs. ExPASy TrEMBL
Match: A0A6J1FDM2 (DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.1e-141
Identity = 252/295 (85.42%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCPI+DR  GGGV CNSLTEIV+ESG GKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPIIDRSVGGGVACNSLTEIVSESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLS GGL A+SLYIHTEFPFP RRLQQLS+AF SSYPQ S  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSLGGLKAASLYIHTEFPFPFRRLQQLSQAFSSSYPQIS--NPSDHIFVEPVHSAQQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLANRDS  PTRLIVIDSIAALFRSDF+NTPSDLKRRSALFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSLAVVLTNQVVDLM SSDGINA+RIGNL+ LCSSGR+VCPALG+AWANCVNSRLFLS
Sbjct: 181 KRYSLAVVLTNQVVDLMDSSDGINALRIGNLKSLCSSGRRVCPALGIAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEV+ EG+ ++NG E+AQR+TRRWLHVVF+PHLPKSSCEY+I+R+GVVGVESQ
Sbjct: 241 RNEEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Moc08g39920 vs. ExPASy TrEMBL
Match: A0A6J1I1Q9 (DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=4 SV=1)

HSP 1 Score: 509.6 bits (1311), Expect = 8.7e-141
Identity = 251/295 (85.08%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ+++KCTFGCPI+DR  GGGV CNSLTEIVAESG GKTQLCLQL  CAQL
Sbjct: 1   MTPENLLHLLQTTRKCTFGCPIIDRSVGGGVACNSLTEIVAESGCGKTQLCLQLCHCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLS GGLNASSLYIHTEFPFP RRLQQLS+AF SSYPQF   NPSDHIFVE VHSA QLF
Sbjct: 61  PLSLGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQF--PNPSDHIFVEPVHSAQQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIESFLANRDS  PTRLIVIDSIAALFRSDF+NTPSDLKRRSALFFKISGKLKLLA
Sbjct: 121 DIMPKIESFLANRDSPLPTRLIVIDSIAALFRSDFDNTPSDLKRRSALFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           KRYSLAVVLTNQVVDL+ SSDGI+A+RIGNL+ LCSSGR+VCPALG+ WANCVNSRLFLS
Sbjct: 181 KRYSLAVVLTNQVVDLLDSSDGISALRIGNLKSLCSSGRRVCPALGITWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVESQ 296
           RNEEV+ EG+ ++NG E+AQR+TRRWLHVVF+PHLPKSSCEY+I+R+GVVGVESQ
Sbjct: 241 RNEEVVGEGDGVVNGGELAQRRTRRWLHVVFAPHLPKSSCEYVINRQGVVGVESQ 293

[Close]

BLAST of Moc08g39920 vs. ExPASy TrEMBL
Match: A0A5A7UPR6 (DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00560 PE=4 SV=1)

HSP 1 Score: 508.1 bits (1307), Expect = 2.5e-140
Identity = 252/295 (85.42%), Postives = 273/295 (92.54%), Query Frame = 0


Query: 1   MTPENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQL 60
           MTPENLLHLLQ++QKCTFGCP +DR  GGG+ C+SLTEIVAESG GKTQLCLQLSLCAQL
Sbjct: 1   MTPENLLHLLQTTQKCTFGCPTIDRSVGGGIACSSLTEIVAESGCGKTQLCLQLSLCAQL 60

Query: 61  PLSNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLF 120
           PLSNGGLNASSLYIHTEFPFP RRLQQLS+AF SSYPQFS  NPSDHIFVE VHSA QLF
Sbjct: 61  PLSNGGLNASSLYIHTEFPFPFRRLQQLSQAFSSSYPQFS--NPSDHIFVEPVHSAHQLF 120

Query: 121 DIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLA 180
           DIMPKIES L NR+S  P RLIVIDSIAALFRSDF+NTPSDLKRRS+LFFKISGKLKLLA
Sbjct: 121 DIMPKIESSLENRNSHLPIRLIVIDSIAALFRSDFDNTPSDLKRRSSLFFKISGKLKLLA 180

Query: 181 KRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLS 240
           K+YSLAVVLTNQVVDLMGSSDG+NA+RIGNL++LCSS R+VCPALGLAWANCVNSRLFLS
Sbjct: 181 KKYSLAVVLTNQVVDLMGSSDGLNALRIGNLKFLCSSERRVCPALGLAWANCVNSRLFLS 240

Query: 241 RNEEVIQEGNSMINGSEVAQ-RKTRRWLHVVFSPHLPKSSCEYIISREGVVGVES 295
           RNEEV+ EG  M+NGSE+ Q RKTRRWLHVVF+PHLPKSSCEY+I+REGVVGVES
Sbjct: 241 RNEEVVGEGEGMVNGSELVQRRKTRRWLHVVFAPHLPKSSCEYVINREGVVGVES 293

[Close]

BLAST of Moc08g39920 vs. TAIR 10
Match: AT5G57450.1 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 370.9 bits (951), Expect = 9.3e-103
Identity = 183/297 (61.62%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 3   PENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPL 62
           PENLL    +++K T GC ILD C  GG+ C+SLTEIVAESG GKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQF---SNTNPSDHIFVEAVHSADQL 122
           S+GGLN SSLY+H+EFPFP RRL QLS  F  S P      N NP DH+FV+ VHS D L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++FP +LIV+DS+AALFRS+F+NTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDG++ +RIGNLRYL SSGR+V P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEEVIQEGNSM--INGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVES 295
           SR++  I +  S    N S    R  +R L +VFSP+LP SSCE++I+REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Moc08g39920 vs. TAIR 10
Match: AT5G57450.2 (homolog of X-ray repair cross complementing 3 (XRCC3) )

HSP 1 Score: 370.9 bits (951), Expect = 9.3e-103
Identity = 183/297 (61.62%), Postives = 230/297 (77.44%), Query Frame = 0


Query: 3   PENLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPL 62
           PENLL    +++K T GC ILD C  GG+ C+SLTEIVAESG GKTQLCLQLSLC QLP+
Sbjct: 8   PENLLRRSPTNRKLTTGCEILDGCLRGGISCDSLTEIVAESGCGKTQLCLQLSLCTQLPI 67

Query: 63  SNGGLNASSLYIHTEFPFPLRRLQQLSRAFCSSYPQF---SNTNPSDHIFVEAVHSADQL 122
           S+GGLN SSLY+H+EFPFP RRL QLS  F  S P      N NP DH+FV+ VHS D L
Sbjct: 68  SHGGLNGSSLYLHSEFPFPFRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHL 127

Query: 123 FDIMPKIESFLANRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLL 182
           FDIMP+I+ F+ N  ++FP +LIV+DS+AALFRS+F+NTPSDLK+RS+LFFKISGKLK L
Sbjct: 128 FDIMPRIDGFVGNSKTRFPLKLIVLDSVAALFRSEFDNTPSDLKKRSSLFFKISGKLKQL 187

Query: 183 AKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFL 242
           A ++ LA+V+TNQV DL+ +SDG++ +RIGNLRYL SSGR+V P+LGLAWANCVNSR F+
Sbjct: 188 ASKFDLAIVITNQVTDLVETSDGLSGLRIGNLRYLYSSGRRVVPSLGLAWANCVNSRFFI 247

Query: 243 SRNEEVIQEGNSM--INGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREGVVGVES 295
           SR++  I +  S    N S    R  +R L +VFSP+LP SSCE++I+REG+  V++
Sbjct: 248 SRSDGSIVKDRSEKDENCSSSVSRSAKRRLDIVFSPYLPGSSCEFMITREGICAVQA 304

[Close]

BLAST of Moc08g39920 vs. TAIR 10
Match: AT2G45280.1 (RAS associated with diabetes protein 51C )

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-24
Identity = 87/301 (28.90%), Postives = 143/301 (47.51%), Query Frame = 0


Query: 5   NLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSN 64
           ++LH  +S  + T  C  LD   GGG+ C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 94  DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 153

Query: 65  GGLNASSLYIHTEFPFPLRRLQQLSRA---------------FCSSYPQFSNTNPSDHIF 124
           GGL   ++YI TE  F + R  Q++ A               F ++  Q    +  ++IF
Sbjct: 154 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 213

Query: 125 VEAVHSADQLFDIMPKIESFLA-NRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSAL 184
              V S  +   ++  +E F++ N+D     +++++DSI   FR D++    DL +R+ +
Sbjct: 214 YFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTRV 273

Query: 185 FFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLA 244
             +++ K   LAK++SLAVVL NQV      S+G                 Q+  ALG +
Sbjct: 274 LSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEG---------------SFQLALALGDS 333

Query: 245 WANCVNSRLFLSRNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREG 290
           W++   +R+ L              NG E       R+ ++  SP LP +S  Y ++  G
Sbjct: 334 WSHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRG 350

[Close]

BLAST of Moc08g39920 vs. TAIR 10
Match: AT2G45280.2 (RAS associated with diabetes protein 51C )

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-24
Identity = 87/301 (28.90%), Postives = 143/301 (47.51%), Query Frame = 0


Query: 5   NLLHLLQSSQKCTFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSN 64
           ++LH  +S  + T  C  LD   GGG+ C  +TEI    G GKTQ+ +QLS+  Q+P   
Sbjct: 118 DMLHEEESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPREC 177

Query: 65  GGLNASSLYIHTEFPFPLRRLQQLSRA---------------FCSSYPQFSNTNPSDHIF 124
           GGL   ++YI TE  F + R  Q++ A               F ++  Q    +  ++IF
Sbjct: 178 GGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIF 237

Query: 125 VEAVHSADQLFDIMPKIESFLA-NRDSQFPTRLIVIDSIAALFRSDFENTPSDLKRRSAL 184
              V S  +   ++  +E F++ N+D     +++++DSI   FR D++    DL +R+ +
Sbjct: 238 YFRVCSYTEQIALVNHLEKFISENKD----VKVVIVDSITFHFRQDYD----DLAQRTRV 297

Query: 185 FFKISGKLKLLAKRYSLAVVLTNQVVDLMGSSDGINAMRIGNLRYLCSSGRQVCPALGLA 244
             +++ K   LAK++SLAVVL NQV      S+G                 Q+  ALG +
Sbjct: 298 LSEMALKFMKLAKKFSLAVVLLNQVTTKF--SEG---------------SFQLALALGDS 357

Query: 245 WANCVNSRLFLSRNEEVIQEGNSMINGSEVAQRKTRRWLHVVFSPHLPKSSCEYIISREG 290
           W++   +R+ L              NG E       R+ ++  SP LP +S  Y ++  G
Sbjct: 358 WSHSCTNRVIL------------YWNGDE-------RYAYIDKSPSLPSASASYTVTSRG 374

[Close]

BLAST of Moc08g39920 vs. TAIR 10
Match: AT5G20850.1 (RAS associated with diabetes protein 51 )

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-18
Identity = 77/273 (28.21%), Postives = 121/273 (44.32%), Query Frame = 0


Query: 17  TFGCPILDRCAGGGVPCNSLTEIVAESGSGKTQLCLQLSLCAQLPLSNGGLNASSLYIHT 76
           T G   LD+   GG+   S+TE+  E  SGKTQLC  L +  QLP+  GG    ++YI  
Sbjct: 106 TSGSRELDKVLEGGIETGSITELYGEFRSGKTQLCHTLCVTCQLPMDQGGGEGKAMYIDA 165

Query: 77  EFPFPLRRLQQLSRAFCSSYPQFSNTNPSDHIFVEAVHSADQLFDIMPKIESFLANRDSQ 136
           E  F  +RL Q++  F       +  +  +++     ++ D    ++ +  S +   +++
Sbjct: 166 EGTFRPQRLLQIADRF-----GLNGADVLENVAYARAYNTDHQSRLLLEAASMMI--ETR 225

Query: 137 FPTRLIVIDSIAALFRSDFENTPSDLKRRSALFFKISGKLKLLAKRYSLAVVLTNQVVDL 196
           F   L+++DS  AL+R+DF     +L  R     K    L+ LA  + +AVV+TNQVV  
Sbjct: 226 F--ALLIVDSATALYRTDFSGR-GELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ 285

Query: 197 MGSSDGINAMRIGNLRYLCSSGRQVCPALGLAWANCVNSRLFLSRNEEVIQEGNSMINGS 256
           +  S                +G Q  P  G   A+   +RL L +               
Sbjct: 286 VDGS-------------ALFAGPQFKPIGGNIMAHATTTRLALRKG-------------- 337

Query: 257 EVAQRKTRRWLHVVFSPHLPKSSCEYIISREGV 290
               R   R   V+ SP LP++   + IS EGV
Sbjct: 346 ----RAEERICKVISSPCLPEAEARFQISTEGV 337

The following BLAST results are available for this feature:

BLAST of Moc08g39920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153353.1	8.0e-165	99.66	DNA repair protein XRCC3 homolog [Momordica charantia]	[more]
XP_038890688.1	2.8e-141	85.76	DNA repair protein XRCC3 homolog [Benincasa hispida]	[more]
XP_004150781.1	4.7e-141	86.15	DNA repair protein XRCC3 homolog [Cucumis sativus] >KGN61137.1 hypothetical prot...	[more]
KAG7020901.1	1.1e-140	85.42	DNA repair protein XRCC3-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_022938282.1	1.1e-140	85.42	DNA repair protein XRCC3 homolog [Cucurbita moschata]	[more]

BLAST of Moc08g39920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM5	1.3e-101	61.62	DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC3 PE=1 S...	[more]
Q9CXE6	3.9e-37	35.57	DNA repair protein XRCC3 OS=Mus musculus OX=10090 GN=Xrcc3 PE=2 SV=1	[more]
O43542	1.5e-33	35.54	DNA repair protein XRCC3 OS=Homo sapiens OX=9606 GN=XRCC3 PE=1 SV=1	[more]
Q08DH8	7.6e-33	34.45	DNA repair protein XRCC3 OS=Bos taurus OX=9913 GN=XRCC3 PE=2 SV=1	[more]
O35719	6.9e-26	31.88	DNA repair protein RAD51 homolog 2 OS=Mus musculus OX=10090 GN=Rad51b PE=2 SV=2	[more]

BLAST of Moc08g39920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DH85	3.9e-165	99.66	DNA repair protein XRCC3 homolog OS=Momordica charantia OX=3673 GN=LOC111020868 ...	[more]
A0A0A0LK93	2.3e-141	86.15	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058700 PE=4...	[more]
A0A6J1FDM2	5.1e-141	85.42	DNA repair protein XRCC3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111444415 P...	[more]
A0A6J1I1Q9	8.7e-141	85.08	DNA repair protein XRCC3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111468643 PE=...	[more]
A0A5A7UPR6	2.5e-140	85.42	DNA repair protein XRCC3-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Moc08g39920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57450.1	9.3e-103	61.62	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT5G57450.2	9.3e-103	61.62	homolog of X-ray repair cross complementing 3 (XRCC3)	[more]
AT2G45280.1	3.0e-24	28.90	RAS associated with diabetes protein 51C	[more]
AT2G45280.2	3.0e-24	28.90	RAS associated with diabetes protein 51C	[more]
AT5G20850.1	1.4e-18	28.21	RAS associated with diabetes protein 51	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01874	DNAREPAIRADA	coord: 25..53 score: 41.03 coord: 145..169 score: 19.18
None	No IPR available	PANTHER	PTHR46487	DNA REPAIR PROTEIN XRCC3	coord: 1..294
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 11..294 e-value: 3.2E-65 score: 222.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 15..290
IPR016467	DNA recombination and repair protein, RecA-like	PIRSF	PIRSF005856	Rad51	coord: 1..295 e-value: 1.8E-51 score: 173.0
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 15..290 e-value: 3.5E-43 score: 147.7
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 12..193 score: 48.306534
IPR033925	Rad51/DMC1/RadA	CDD	cd01123	Rad51_DMC1_radA	coord: 17..290 e-value: 6.8815E-83 score: 247.497

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g39920.1	Moc08g39920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045003	double-strand break repair via synthesis-dependent strand annealing
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0071140	resolution of mitotic recombination intermediates
biological_process	GO:0090656	t-circle formation
biological_process	GO:0000722	telomere maintenance via recombination
biological_process	GO:0006281	DNA repair
cellular_component	GO:0033065	Rad51C-XRCC3 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0000400	four-way junction DNA binding
molecular_function	GO:0003677	DNA binding