Moc08g39860 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g39860
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	40S ribosomal protein S8
Location	chr8: 30494980 .. 30496299 (-)
RNA-Seq Expression	Moc08g39860
Synteny	Moc08g39860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGTCAGTTACAAATTTCCAGACTTTTCTACTTATCTCAGGTATTTTACCATGTTTTAGTTTTGTTAATGTGGGGGGACTTTGTGGATAGGTATTTCTCGTGACTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTAACTACCTCTGCTTATATTTAGCCTAGTCCAATTTGATTCATCAGTTTTTACTTCCATTTCCCCACATTAGTTGCTGATAGATCAACAGAAAATTTCATACCTATCTTTCTTTGCTTGGTTTTTAGTACACACTGGTAATATTTTAGGTTAACCTTGCATATTGATTTTTACTTCTATTTTTTATTTTTTTGTGGATAAGTGGTGATGTCATTGGTGGCAATGTTATGTCATTTGTTTTGTTTTCTGATATAGATTCTAATAAGCTTAGTTAATCTGCATGAACTAGCTATCTCATCCTCACTGTCACTGATTGATCGTTGTTTTTATTGTATAAATTATTACGTGTCATGTAAAATGTCTTCACATTCACTTGTTTTATGAATGGGGCGACTTCTCTTATTGATGTAGAAACATAGTCTCTCTTCCAATATTTGTGTTTTGTTATGATTTGATGCTAAAAATTTTCTAATACAGAAGTTGAAATGTAACCTTCTTTTTACCTTGTATTTATTTATGAGCTGTTGATATTGAAAGTTCAACTATCACTTGTCACTTTTTTTTTTTCAATTCAGAAAACAACTTCCACGTGCTGTATTAATGAAGCTCTCTTCTGATATCTTTTCTTTCCCCTTGTTTGTTTGTAAAGGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGCGACAAGTCAGTCAGGAGGATTAGAGTTCGTGGGGGTAATGTGAAATGGCGTGCTTTTAGGCTTGATCAAGGAAACTACTCTTGGGGTAGTGAGGCTGTGACTAGAAGGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAACGAGCTCGTCCGTACTCAATCTCTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTTAAGCAGTGGTATGTTCAGCATTATGGGTGGATATTGGACGGAAGAAGAAAACCACAGCATCTGCGAAGAAGGAAGAGGTAGATCAAGATTTATAGATCGACTGATTGATTGGGGTTATACGATCTCAAATCCCATTTTTTAATGCTTTAATATGATACAAAACGTGTTCTAATGCAAACTTTATTTTTTTGTGTTGATAGGAAGGTGATGAGGAGGAGAAGAAGAGTAACCATGTCCAGCGCAAACTAG

mRNA sequence

ATGGGTATTTCTCGTGACTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGCGACAAGTCAGTCAGGAGGATTAGAGTTCGTGGGGGTAATGTGAAATGGCGTGCTTTTAGGCTTGATCAAGGAAACTACTCTTGGGGTAGTGAGGCTGTGACTAGAAGGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAACGAGCTCGTCCGTACTCAATCTCTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTTAAGCAGTGGTATGTTCAGCATTATGGGTGGATATTGGACGGAAGAAGAAAACCACAGCATCTGCGAAGAAGGAAGAGGAAGGTGATGAGGAGGAGAAGAAGAGTAACCATGTCCAGCGCAAACTAG

Coding sequence (CDS)

ATGGGTATTTCTCGTGACTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTGCCAACACTAAGTTGTCCAGCGACAAGTCAGTCAGGAGGATTAGAGTTCGTGGGGGTAATGTGAAATGGCGTGCTTTTAGGCTTGATCAAGGAAACTACTCTTGGGGTAGTGAGGCTGTGACTAGAAGGACCCGTATTCTTGATGTGGTGTACAATGCATCTAACAACGAGCTCGTCCGTACTCAATCTCTGGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTTAAGCAGTGGTATGTTCAGCATTATGGGTGGATATTGGACGGAAGAAGAAAACCACAGCATCTGCGAAGAAGGAAGAGGAAGGTGATGAGGAGGAGAAGAAGAGTAACCATGTCCAGCGCAAACTAG

Protein sequence

MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFRLDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGWILDGRRKPQHLRRRKRKVMRRRRRVTMSSAN

Homology

[Close]

BLAST of Moc08g39860 vs. NCBI nr
Match: XP_022153390.1 (40S ribosomal protein S8-like [Momordica charantia])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYG 
Sbjct: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYG- 120

Query: 121 ILDGRRKPQHLRRRKRK 138
           +  GR+K      +K +
Sbjct: 121 VDIGRKKKTTASAKKEE 136

[Close]

BLAST of Moc08g39860 vs. NCBI nr
Match: XP_038884004.1 (40S ribosomal protein S8-2 [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 3.7e-57
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR+TRILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. NCBI nr
Match: XP_008466734.1 (PREDICTED: 40S ribosomal protein S8-2 [Cucumis melo] >KAA0055451.1 40S ribosomal protein S8-2 [Cucumis melo var. makuwa] >TYK08933.1 40S ribosomal protein S8-2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.7e-57
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR+TRILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. NCBI nr
Match: XP_004149800.1 (40S ribosomal protein S8 [Cucumis sativus] >KGN47709.1 hypothetical protein Csa_018323 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.4e-56
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAV+R+TRILDVVYNASNNELVRTQ+LVKSA+VQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. NCBI nr
Match: XP_022929761.1 (40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal protein S8-like [Cucurbita moschata] >XP_022997461.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_022997462.1 40S ribosomal protein S8-like [Cucurbita maxima] >XP_023547179.1 40S ribosomal protein S8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.8e-56
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR++RILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy Swiss-Prot
Match: O81361 (40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 5.9e-58
Identity = 113/127 (88.98%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSS+K+VRRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GN+SWGSEAVTR+TR+LDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VEIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy Swiss-Prot
Match: Q08069 (40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-57
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K+VRR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR+TRILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+ HYG 
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy Swiss-Prot
Match: P49199 (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 SV=2)

HSP 1 Score: 222.6 bits (566), Expect = 2.9e-57
Identity = 112/127 (88.19%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGK+KAWRKKRKYELGRQPANTKLSS+K+VRR+RVRGGNVKWRA R
Sbjct: 1   MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR+TRILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+ HYG 
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy Swiss-Prot
Match: Q93VG5 (40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.8e-55
Identity = 108/127 (85.04%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K+VRRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEA TR+TR+LDVVYNASNNELVRT++LVKSAIVQVDAAPFKQWY+ HYG 
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 ILDGRRK 128
            L GR+K
Sbjct: 121 EL-GRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy Swiss-Prot
Match: Q9FIF3 (40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-54
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K+VRRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GN+SWGSEAVTR+TRILDV YNASNNELVRTQ+LVKSAIVQVDAAPFKQ Y+QHYG 
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy TrEMBL
Match: A0A6J1DGP6 (40S ribosomal protein S8 OS=Momordica charantia OX=3673 GN=LOC111020895 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.6e-58
Identity = 123/137 (89.78%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYG 
Sbjct: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYG- 120

Query: 121 ILDGRRKPQHLRRRKRK 138
           +  GR+K      +K +
Sbjct: 121 VDIGRKKKTTASAKKEE 136

[Close]

BLAST of Moc08g39860 vs. ExPASy TrEMBL
Match: A0A5D3CAQ0 (40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00210 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR+TRILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy TrEMBL
Match: A0A1S3CRZ5 (40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR+TRILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy TrEMBL
Match: A0A0A0KFT0 (40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.8e-57
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAV+R+TRILDVVYNASNNELVRTQ+LVKSA+VQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVSRKTRILDVVYNASNNELVRTQTLVKSAVVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. ExPASy TrEMBL
Match: A0A6J1K537 (40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111492371 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.9e-57
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTK+SSDKS+RRIRVRGGNVKWRAFR
Sbjct: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKISSDKSIRRIRVRGGNVKWRAFR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEAVTR++RILDVVYNASNNELVRTQ+LVKSAIVQVDAAPFKQWY+QHYG 
Sbjct: 61  LDTGNYSWGSEAVTRKSRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

[Close]

BLAST of Moc08g39860 vs. TAIR 10
Match: AT5G20290.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-56
Identity = 108/127 (85.04%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYE+GRQPANTKLSS+K+VRRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GNYSWGSEA TR+TR+LDVVYNASNNELVRT++LVKSAIVQVDAAPFKQWY+ HYG 
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 ILDGRRK 128
            L GR+K
Sbjct: 121 EL-GRKK 126

[Close]

BLAST of Moc08g39860 vs. TAIR 10
Match: AT5G59240.1 (Ribosomal protein S8e family protein )

HSP 1 Score: 213.8 bits (543), Expect = 9.7e-56
Identity = 109/127 (85.83%), Postives = 119/127 (93.70%), Query Frame = 0


Query: 1   MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSDKSVRRIRVRGGNVKWRAFR 60
           MGISRDS+HKRRATGGK+K WRKKRKYELGRQPANTKLSS+K+VRRIRVRGGNVKWRA R
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDQGNYSWGSEAVTRRTRILDVVYNASNNELVRTQSLVKSAIVQVDAAPFKQWYVQHYGW 120
           LD GN+SWGSEAVTR+TRILDV YNASNNELVRTQ+LVKSAIVQVDAAPFKQ Y+QHYG 
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYG- 120

Query: 121 ILDGRRK 128
           +  GR+K
Sbjct: 121 VDIGRKK 126

The following BLAST results are available for this feature:

BLAST of Moc08g39860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153390.1	3.4e-58	89.78	40S ribosomal protein S8-like [Momordica charantia]	[more]
XP_038884004.1	3.7e-57	92.13	40S ribosomal protein S8-2 [Benincasa hispida]	[more]
XP_008466734.1	3.7e-57	92.13	PREDICTED: 40S ribosomal protein S8-2 [Cucumis melo] >KAA0055451.1 40S ribosomal...	[more]
XP_004149800.1	1.4e-56	90.55	40S ribosomal protein S8 [Cucumis sativus] >KGN47709.1 hypothetical protein Csa_...	[more]
XP_022929761.1	1.8e-56	90.55	40S ribosomal protein S8-like [Cucurbita moschata] >XP_022929762.1 40S ribosomal...	[more]

BLAST of Moc08g39860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81361	5.9e-58	88.98	40S ribosomal protein S8 OS=Prunus armeniaca OX=36596 GN=RPS8 PE=2 SV=1	[more]
Q08069	2.9e-57	88.19	40S ribosomal protein S8 OS=Zea mays OX=4577 GN=RPS8 PE=2 SV=2	[more]
P49199	2.9e-57	88.19	40S ribosomal protein S8 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS8 PE=2 S...	[more]
Q93VG5	2.8e-55	85.04	40S ribosomal protein S8-1 OS=Arabidopsis thaliana OX=3702 GN=RPS8A PE=1 SV=1	[more]
Q9FIF3	1.4e-54	85.83	40S ribosomal protein S8-2 OS=Arabidopsis thaliana OX=3702 GN=RPS8B PE=2 SV=1	[more]

BLAST of Moc08g39860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGP6	1.6e-58	89.78	40S ribosomal protein S8 OS=Momordica charantia OX=3673 GN=LOC111020895 PE=3 SV=...	[more]
A0A5D3CAQ0	1.8e-57	92.13	40S ribosomal protein S8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CRZ5	1.8e-57	92.13	40S ribosomal protein S8 OS=Cucumis melo OX=3656 GN=LOC103504075 PE=3 SV=1	[more]
A0A0A0KFT0	6.8e-57	90.55	40S ribosomal protein S8 OS=Cucumis sativus OX=3659 GN=Csa_6G382970 PE=3 SV=1	[more]
A0A6J1K537	8.9e-57	90.55	40S ribosomal protein S8 OS=Cucurbita maxima OX=3661 GN=LOC111492371 PE=3 SV=1	[more]

BLAST of Moc08g39860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20290.1	2.0e-56	85.04	Ribosomal protein S8e family protein	[more]
AT5G59240.1	9.7e-56	85.83	Ribosomal protein S8e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022309	Ribosomal protein S8e/ribosomal biogenesis NSA2	PFAM	PF01201	Ribosomal_S8e	coord: 1..111 e-value: 4.9E-42 score: 143.4
IPR001047	Ribosomal protein S8e	TIGRFAM	TIGR00307	TIGR00307	coord: 1..108 e-value: 3.0E-36 score: 122.3
IPR001047	Ribosomal protein S8e	PANTHER	PTHR10394	40S RIBOSOMAL PROTEIN S8	coord: 1..130
None	No IPR available	GENE3D	3.10.290.70		coord: 32..143 e-value: 6.1E-35 score: 122.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR10394:SF25	40S RIBOSOMAL PROTEIN S8	coord: 1..130
None	No IPR available	CDD	cd11380	Ribosomal_S8e_like	coord: 5..114 e-value: 1.33945E-49 score: 153.829
IPR018283	Ribosomal protein S8e, conserved site	PROSITE	PS01193	RIBOSOMAL_S8E	coord: 11..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g39860.1	Moc08g39860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome