Moc08g39020 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g39020
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	NB-ARC domain-containing protein
Location	chr8: 29443091 .. 29443483 (-)
RNA-Seq Expression	Moc08g39020
Synteny	Moc08g39020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTGCAGAGAATTTGGAGATGATATGGCACAATGTACCCATTCCTAATTCTTTTTCCAAACTCGAAACTGTACAAATTGAGTCATGTAACAATTTAGAAAAAGTTTTTCCTTCAAATATAATAACCATACTTTCCTGCCTTAAATTCTTAACCATTAAAAAATGTAATTTATTGAAATGTATATTTGAAGTACAAGAGCCCAATGAGATAGAAAAAAGTATTGCTTTGCTCTCAAATTTGAGGCGCTTGGAACTATTTAATTTGCCAAACCTAGAGTATGTATGGAGAAAGAGTCCATCTGAGCTTCTGATTTTTGAAGACATAAAAGTATTGTCCATTCAACAATGTCCAAAGCTTAAAAGAGCAATATCCAATCAAAGTTCTTAA

mRNA sequence

ATGAGAGGTGCAGAGAATTTGGAGATGATATGGCACAATGTACCCATTCCTAATTCTTTTTCCAAACTCGAAACTGTACAAATTGAGTCATGTAACAATTTAGAAAAAGTTTTTCCTTCAAATATAATAACCATACTTTCCTGCCTTAAATTCTTAACCATTAAAAAATGTAATTTATTGAAATGTATATTTGAAGTACAAGAGCCCAATGAGATAGAAAAAAGTATTGCTTTGCTCTCAAATTTGAGGCGCTTGGAACTATTTAATTTGCCAAACCTAGAGTATGTATGGAGAAAGAGTCCATCTGAGCTTCTGATTTTTGAAGACATAAAAGTATTGTCCATTCAACAATGTCCAAAGCTTAAAAGAGCAATATCCAATCAAAGTTCTTAA

Coding sequence (CDS)

ATGAGAGGTGCAGAGAATTTGGAGATGATATGGCACAATGTACCCATTCCTAATTCTTTTTCCAAACTCGAAACTGTACAAATTGAGTCATGTAACAATTTAGAAAAAGTTTTTCCTTCAAATATAATAACCATACTTTCCTGCCTTAAATTCTTAACCATTAAAAAATGTAATTTATTGAAATGTATATTTGAAGTACAAGAGCCCAATGAGATAGAAAAAAGTATTGCTTTGCTCTCAAATTTGAGGCGCTTGGAACTATTTAATTTGCCAAACCTAGAGTATGTATGGAGAAAGAGTCCATCTGAGCTTCTGATTTTTGAAGACATAAAAGTATTGTCCATTCAACAATGTCCAAAGCTTAAAAGAGCAATATCCAATCAAAGTTCTTAA

Protein sequence

MRGAENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLLKCIFEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKLKRAISNQSS

Homology

[Close]

BLAST of Moc08g39020 vs. NCBI nr
Match: XP_022150721.1 (probable disease resistance protein At4g27220 [Momordica charantia])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 91/121 (75.21%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 4   AENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLLKCI 63
           A+NL+MIWHNV +PNSFSKLETVQIESCNN+EKVFP NI+++LSCLK LTI+ C LLKCI
Sbjct: 560 ADNLKMIWHNVLVPNSFSKLETVQIESCNNIEKVFPPNIMSVLSCLKSLTIRDCKLLKCI 619

Query: 64  FEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKLKR 123
           FEVQE N  EKSI LLSNLR L L+NLP+LEYVW K   ELLIFE+IKVLSI++C KL+R
Sbjct: 620 FEVQEANTREKSIDLLSNLRDLILYNLPSLEYVWSKDSCELLIFENIKVLSIEECHKLQR 679

Query: 124 A 125
           A
Sbjct: 680 A 680

[Close]

BLAST of Moc08g39020 vs. NCBI nr
Match: XP_022150758.1 (uncharacterized protein LOC111018819 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 5.3e-36
Identity = 81/123 (65.85%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 4   AENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLLKCI 63
           A+NL+MIW NV +P SFSKL+ V+I+SCNN+EK FP NI TIL+CL+ LT+  CNLLKCI
Sbjct: 221 ADNLKMIWQNVLVPISFSKLKRVEIDSCNNVEKAFPPNITTILTCLQSLTVMNCNLLKCI 280

Query: 64  FEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKLKR 123
           FE+QEPN  EKSI +LSNLR L+L+NLP+LEYVW K  SEL  FE+++ L IQ CP LKR
Sbjct: 281 FELQEPNTTEKSI-VLSNLRYLKLYNLPSLEYVWSKDSSELSSFENMESLFIQGCPNLKR 340

Query: 124 AIS 127
           A S
Sbjct: 341 AYS 342

[Close]

BLAST of Moc08g39020 vs. NCBI nr
Match: XP_038890457.1 (probable disease resistance protein At4g27220 isoform X2 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 76/123 (61.79%), Postives = 98/123 (79.67%), Query Frame = 0


Query: 1    MRGAENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLL 60
            ++ A+NL+MI+HN+ IPNSFSKLE++ I  CNNLEKVFPSNII+  +CLK L IK CNLL
Sbjct: 952  IKEAQNLKMIFHNILIPNSFSKLESLMIGECNNLEKVFPSNIISTFTCLKILRIKSCNLL 1011

Query: 61   KCIFEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPK 120
            + +FEVQEPN I+K+  LL +LR LEL  LPNL+Y+W K P ELL  +++++L I QCPK
Sbjct: 1012 EGVFEVQEPNAIQKNNDLLPSLRHLELIELPNLQYIWEKDPCELLKAKNLEILFISQCPK 1071

Query: 121  LKR 124
            LKR
Sbjct: 1072 LKR 1074

[Close]

BLAST of Moc08g39020 vs. NCBI nr
Match: XP_038890456.1 (probable disease resistance protein At4g27220 isoform X1 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 76/123 (61.79%), Postives = 98/123 (79.67%), Query Frame = 0


Query: 1    MRGAENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLL 60
            ++ A+NL+MI+HN+ IPNSFSKLE++ I  CNNLEKVFPSNII+  +CLK L IK CNLL
Sbjct: 952  IKEAQNLKMIFHNILIPNSFSKLESLMIGECNNLEKVFPSNIISTFTCLKILRIKSCNLL 1011

Query: 61   KCIFEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPK 120
            + +FEVQEPN I+K+  LL +LR LEL  LPNL+Y+W K P ELL  +++++L I QCPK
Sbjct: 1012 EGVFEVQEPNAIQKNNDLLPSLRHLELIELPNLQYIWEKDPCELLKAKNLEILFISQCPK 1071

Query: 121  LKR 124
            LKR
Sbjct: 1072 LKR 1074

[Close]

BLAST of Moc08g39020 vs. NCBI nr
Match: KAE8651579.1 (hypothetical protein Csa_023428 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.0e-31
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 4    AENLEMIW-HNVPIPNSFSKLETVQIESCNNLEKV-FPSNIITILSCLKFLTIKKCNLLK 63
            AENL MIW +NV  PNSFSKLE V+I SCNNL KV FPSN+++IL+CLK L I  C LL+
Sbjct: 987  AENLTMIWCNNVHFPNSFSKLEEVEIASCNNLHKVLFPSNVMSILTCLKVLRINCCKLLE 1046

Query: 64   CIFEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKL 123
             IFEVQE +  + S+ +L NLR L+L+NLPNLEYVW K+P ELL F +IK L+I +CP+L
Sbjct: 1047 GIFEVQESSITDTSLIVLKNLRELKLYNLPNLEYVWSKNPCELLSFVNIKGLAIDECPRL 1106

Query: 124  KRAIS 127
            +R  S
Sbjct: 1107 RREYS 1111

[Close]

BLAST of Moc08g39020 vs. ExPASy TrEMBL
Match: A0A6J1DCC9 (probable disease resistance protein At4g27220 OS=Momordica charantia OX=3673 GN=LOC111018787 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 91/121 (75.21%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 4   AENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLLKCI 63
           A+NL+MIWHNV +PNSFSKLETVQIESCNN+EKVFP NI+++LSCLK LTI+ C LLKCI
Sbjct: 560 ADNLKMIWHNVLVPNSFSKLETVQIESCNNIEKVFPPNIMSVLSCLKSLTIRDCKLLKCI 619

Query: 64  FEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKLKR 123
           FEVQE N  EKSI LLSNLR L L+NLP+LEYVW K   ELLIFE+IKVLSI++C KL+R
Sbjct: 620 FEVQEANTREKSIDLLSNLRDLILYNLPSLEYVWSKDSCELLIFENIKVLSIEECHKLQR 679

Query: 124 A 125
           A
Sbjct: 680 A 680

[Close]

BLAST of Moc08g39020 vs. ExPASy TrEMBL
Match: A0A6J1DAA6 (uncharacterized protein LOC111018819 OS=Momordica charantia OX=3673 GN=LOC111018819 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-36
Identity = 81/123 (65.85%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 4   AENLEMIWHNVPIPNSFSKLETVQIESCNNLEKVFPSNIITILSCLKFLTIKKCNLLKCI 63
           A+NL+MIW NV +P SFSKL+ V+I+SCNN+EK FP NI TIL+CL+ LT+  CNLLKCI
Sbjct: 221 ADNLKMIWQNVLVPISFSKLKRVEIDSCNNVEKAFPPNITTILTCLQSLTVMNCNLLKCI 280

Query: 64  FEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKLKR 123
           FE+QEPN  EKSI +LSNLR L+L+NLP+LEYVW K  SEL  FE+++ L IQ CP LKR
Sbjct: 281 FELQEPNTTEKSI-VLSNLRYLKLYNLPSLEYVWSKDSSELSSFENMESLFIQGCPNLKR 340

Query: 124 AIS 127
           A S
Sbjct: 341 AYS 342

[Close]

BLAST of Moc08g39020 vs. ExPASy TrEMBL
Match: A0A0A0LLJ0 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G014830 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.0e-32
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 4    AENLEMIW-HNVPIPNSFSKLETVQIESCNNLEKV-FPSNIITILSCLKFLTIKKCNLLK 63
            AENL MIW +NV  PNSFSKLE V+I SCNNL KV FPSN+++IL+CLK L I  C LL+
Sbjct: 958  AENLTMIWCNNVHFPNSFSKLEEVEIASCNNLHKVLFPSNVMSILTCLKVLRINCCKLLE 1017

Query: 64   CIFEVQEPNEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQCPKL 123
             IFEVQE +  + S+ +L NLR L+L+NLPNLEYVW K+P ELL F +IK L+I +CP+L
Sbjct: 1018 GIFEVQESSITDTSLIVLKNLRELKLYNLPNLEYVWSKNPCELLSFVNIKGLAIDECPRL 1077

Query: 124  KRAIS 127
            +R  S
Sbjct: 1078 RREYS 1082

[Close]

BLAST of Moc08g39020 vs. ExPASy TrEMBL
Match: A0A1S4E0R8 (probable disease resistance protein At1g63360 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495494 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1    MRGAENLEMIW-HNVPIPNSFSKLETVQIESCNNLEKV-FPSNIITILSCLKFLTIKKCN 60
            +R A NL+MIW +NV +PNSFSKL+ + I SCNNL+KV F SN++ IL+CLK L I+ C 
Sbjct: 962  IRSATNLKMIWSNNVLVPNSFSKLKEINIYSCNNLQKVLFSSNMMNILTCLKILIIEDCK 1021

Query: 61   LLKCIFEVQEP-NEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQ 120
            LL+ IFEVQEP N +E S  +L NL  L+L+NLPNLEYVW K+PSELL  E+IK L+I +
Sbjct: 1022 LLEGIFEVQEPINIVEASPIVLQNLNELKLYNLPNLEYVWSKNPSELLSLENIKSLTIDE 1081

Query: 121  CPKLKRAIS 127
            CP+L+R  S
Sbjct: 1082 CPRLRREYS 1090

[Close]

BLAST of Moc08g39020 vs. ExPASy TrEMBL
Match: A0A1S3C068 (probable disease resistance protein At4g27220 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495494 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 77/129 (59.69%), Postives = 99/129 (76.74%), Query Frame = 0


Query: 1    MRGAENLEMIW-HNVPIPNSFSKLETVQIESCNNLEKV-FPSNIITILSCLKFLTIKKCN 60
            +R A NL+MIW +NV +PNSFSKL+ + I SCNNL+KV F SN++ IL+CLK L I+ C 
Sbjct: 962  IRSATNLKMIWSNNVLVPNSFSKLKEINIYSCNNLQKVLFSSNMMNILTCLKILIIEDCK 1021

Query: 61   LLKCIFEVQEP-NEIEKSIALLSNLRRLELFNLPNLEYVWRKSPSELLIFEDIKVLSIQQ 120
            LL+ IFEVQEP N +E S  +L NL  L+L+NLPNLEYVW K+PSELL  E+IK L+I +
Sbjct: 1022 LLEGIFEVQEPINIVEASPIVLQNLNELKLYNLPNLEYVWSKNPSELLSLENIKSLTIDE 1081

Query: 121  CPKLKRAIS 127
            CP+L+R  S
Sbjct: 1082 CPRLRREYS 1090

The following BLAST results are available for this feature:

BLAST of Moc08g39020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150721.1	1.0e-42	75.21	probable disease resistance protein At4g27220 [Momordica charantia]	[more]
XP_022150758.1	5.3e-36	65.85	uncharacterized protein LOC111018819 [Momordica charantia]	[more]
XP_038890457.1	1.5e-35	61.79	probable disease resistance protein At4g27220 isoform X2 [Benincasa hispida]	[more]
XP_038890456.1	1.5e-35	61.79	probable disease resistance protein At4g27220 isoform X1 [Benincasa hispida]	[more]
KAE8651579.1	1.0e-31	61.60	hypothetical protein Csa_023428 [Cucumis sativus]	[more]

BLAST of Moc08g39020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g39020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCC9	4.8e-43	75.21	probable disease resistance protein At4g27220 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1DAA6	2.6e-36	65.85	uncharacterized protein LOC111018819 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0LLJ0	5.0e-32	61.60	NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G014830 PE=4...	[more]
A0A1S4E0R8	1.1e-31	59.69	probable disease resistance protein At1g63360 isoform X1 OS=Cucumis melo OX=3656...	[more]
A0A1S3C068	1.1e-31	59.69	probable disease resistance protein At4g27220 isoform X2 OS=Cucumis melo OX=3656...	[more]

BLAST of Moc08g39020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..129 e-value: 6.2E-9 score: 36.8
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 18..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g39020.1	Moc08g39020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding