Moc07g22740 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g22740
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Integrase catalytic domain-containing protein
Location	chr7: 16767046 .. 16767492 (+)
RNA-Seq Expression	Moc07g22740
Synteny	Moc07g22740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTCTTTTAGCAGCAACTTAGGATCCGATGAGGATTTAGTTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTCCGATGACGGGGAGGATAGTGATGCCTCCACCTCAGGTCAGGGTTTGGAATACCCTTCTAGGATACCGGAGCACTACCTCGGATCCCTTCGTAGGAGGTTCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGACTTCCCCTTCACCCTTTCGTCCAAGAGTTTCTTTTCCGAACTGGGCTGGCTCCGGCACAAGTGGCCCCCAATGGGTGGGGTGTCATTTTCGCTTTGGCCATCCTTTTTTGGCTACGAGCTCGGGATAGTGAAGAGGCCTAG

mRNA sequence

ATGTCGTCCTCTTTTAGCAGCAACTTAGGATCCGATGAGGATTTAGTTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTCCGATGACGGGGAGGATAGTGATGCCTCCACCTCAGGTCAGGGTTTGGAATACCCTTCTAGGATACCGGAGCACTACCTCGGATCCCTTCGTAGGAGGTTCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGACTTCCCCTTCACCCTTTCGTCCAAGAGTTTCTTTTCCGAACTGGGCTGGCTCCGGCACAAGTGGCCCCCAATGGGTGGGGTGTCATTTTCGCTTTGGCCATCCTTTTTTGGCTACGAGCTCGGGATAGTGAAGAGGCCTAG

Coding sequence (CDS)

ATGTCGTCCTCTTTTAGCAGCAACTTAGGATCCGATGAGGATTTAGTTCGTAGGTTAGAGTCCGAGCTCGAGGAGATAGAAAACTTTAGGTTCTCCGATGACGGGGAGGATAGTGATGCCTCCACCTCAGGTCAGGGTTTGGAATACCCTTCTAGGATACCGGAGCACTACCTCGGATCCCTTCGTAGGAGGTTCGCTATCCCTGAGAACATCCTCCTTAGGATTCCGGAGGAGGGGGAGAGAGCTGACAATCCTCCAGAGGGATGGGTCACTCTCTACTTCAAAATGTTTGAGTACGGCCTCAGACTTCCCCTTCACCCTTTCGTCCAAGAGTTTCTTTTCCGAACTGGGCTGGCTCCGGCACAAGTGGCCCCCAATGGGTGGGGTGTCATTTTCGCTTTGGCCATCCTTTTTTGGCTACGAGCTCGGGATAGTGAAGAGGCCTAG

Protein sequence

MSSSFSSNLGSDEDLVRRLESELEEIENFRFSDDGEDSDASTSGQGLEYPSRIPEHYLGSLRRRFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA

Homology

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BLAST of Moc07g22740 vs. NCBI nr
Match: XP_022159063.1 (uncharacterized protein LOC111025502, partial [Momordica charantia])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 137/148 (92.57%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MSSSFSSNLGSDEDLVRRLESELEEIENFRFSDDGEDSDASTSGQGLEYPSRIPEHYLGS 60
           MSSS SSNL  + DL RRLES+LEEIEN R SDDGEDSDASTSGQGLEYPSRIPEHYLGS
Sbjct: 1   MSSSISSNL--ESDLARRLESKLEEIENXRISDDGEDSDASTSGQGLEYPSRIPEHYLGS 60

Query: 61  LRRRFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 120
           LRR FAIPENILLR+PEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP
Sbjct: 61  LRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 120

Query: 121 AQVAPNGWGVIFALAILFWLRARDSEEA 149
           AQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 121 AQVAPNGWGVIFALAILFWLRARDSEEA 146

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BLAST of Moc07g22740 vs. NCBI nr
Match: XP_022158122.1 (uncharacterized protein LOC111024680 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 1   MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 53

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BLAST of Moc07g22740 vs. NCBI nr
Match: XP_022144034.1 (uncharacterized protein LOC111013826 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 1   MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 53

[Close]

BLAST of Moc07g22740 vs. NCBI nr
Match: XP_022158650.1 (uncharacterized protein LOC111025108 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 6.5e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 1   MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 53

[Close]

BLAST of Moc07g22740 vs. NCBI nr
Match: XP_022155229.1 (uncharacterized protein LOC111022371 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-20
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEY LR PLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLR RDSEEA
Sbjct: 1   MFEYDLRFPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRVRDSEEA 53

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BLAST of Moc07g22740 vs. ExPASy Swiss-Prot
Match: Q9LEX8 (Uncharacterized protein At3g60930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g60930 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 51  SRIPEHYLGSLRRRFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYG--LRLPLHPF 110
           S   E  L  L+ RF +   + LR+P   ERAD+PP G+ TLY + F YG  L LP+   
Sbjct: 155 SMCTEQSLSDLKARFGLGA-VTLRVPSPEERADSPPAGFYTLY-EGFFYGCLLWLPIPRL 214

Query: 111 VQEFLFRTGLAPAQV 124
           V E++    +A +Q+
Sbjct: 215 VLEYVTSYQIALSQI 227

[Close]

BLAST of Moc07g22740 vs. ExPASy TrEMBL
Match: A0A6J1DXS5 (uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025502 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.1e-71
Identity = 137/148 (92.57%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MSSSFSSNLGSDEDLVRRLESELEEIENFRFSDDGEDSDASTSGQGLEYPSRIPEHYLGS 60
           MSSS SSNL  + DL RRLES+LEEIEN R SDDGEDSDASTSGQGLEYPSRIPEHYLGS
Sbjct: 1   MSSSISSNL--ESDLARRLESKLEEIENXRISDDGEDSDASTSGQGLEYPSRIPEHYLGS 60

Query: 61  LRRRFAIPENILLRIPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 120
           LRR FAIPENILLR+PEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP
Sbjct: 61  LRRGFAIPENILLRLPEEGERADNPPEGWVTLYFKMFEYGLRLPLHPFVQEFLFRTGLAP 120

Query: 121 AQVAPNGWGVIFALAILFWLRARDSEEA 149
           AQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 121 AQVAPNGWGVIFALAILFWLRARDSEEA 146

[Close]

BLAST of Moc07g22740 vs. ExPASy TrEMBL
Match: A0A6J1CR42 (uncharacterized protein LOC111013826 OS=Momordica charantia OX=3673 GN=LOC111013826 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 1   MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 53

[Close]

BLAST of Moc07g22740 vs. ExPASy TrEMBL
Match: A0A6J1DWD2 (uncharacterized protein LOC111024680 OS=Momordica charantia OX=3673 GN=LOC111024680 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 1   MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 53

[Close]

BLAST of Moc07g22740 vs. ExPASy TrEMBL
Match: A0A6J1DWF1 (uncharacterized protein LOC111025108 OS=Momordica charantia OX=3673 GN=LOC111025108 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA
Sbjct: 1   MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 53

[Close]

BLAST of Moc07g22740 vs. ExPASy TrEMBL
Match: A0A6J1DPM7 (uncharacterized protein LOC111022371 OS=Momordica charantia OX=3673 GN=LOC111022371 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.7e-20
Identity = 50/53 (94.34%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 96  MFEYGLRLPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRARDSEEA 149
           MFEY LR PLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLR RDSEEA
Sbjct: 1   MFEYDLRFPLHPFVQEFLFRTGLAPAQVAPNGWGVIFALAILFWLRVRDSEEA 53

[Close]

BLAST of Moc07g22740 vs. TAIR 10
Match: AT1G32010.1 (myosin heavy chain-related )

HSP 1 Score: 42.0 bits (97), Expect = 5.0e-04
Identity = 28/113 (24.78%), Postives = 53/113 (46.90%), Query Frame = 0


Query: 18  RLESELEEIENFRFSDDGEDSDASTSGQGLEY------PSRIPEHYLGSLRRRFAIPENI 77
           R+ ++ +   N    D+ E +D + SG+  +       P+      +G       +P  +
Sbjct: 84  RVNTDSDGAGNRYADDERESADENVSGESRKNEMVDLGPTTSTRESVGQTTDFCLLPGPL 143

Query: 78  LLRIPEEGERADNPPEGWVTLYFKMF-EYGLRLPLHPFVQEFLFRTGLAPAQV 124
            +RIP + +R  + PEG++ L+   F E GLR P+  F+  F     +A +Q+
Sbjct: 144 TIRIPRDTDRPSDCPEGFICLFEGFFTETGLRFPIPDFLMRFCRNRQIAISQL 196

[Close]

BLAST of Moc07g22740 vs. TAIR 10
Match: AT3G42060.1 (myosin heavy chain-related )

HSP 1 Score: 41.6 bits (96), Expect = 6.5e-04
Identity = 23/75 (30.67%), Postives = 37/75 (49.33%), Query Frame = 0


Query: 51  SRIPEHYLGSLRRRFAIPENILLRIPEEGERADNPPEGWVTLYFKMF-EYGLRLPLHPFV 110
           SR    + G    +   PE +   IPE  +R  + PEG++ L+   F E GL  PL  F+
Sbjct: 159 SRATSQFCGRRANKNQAPEGVEALIPEPHQRPSDCPEGYICLFESYFTEGGLWFPLPEFL 218

Query: 111 QEFLFRTGLAPAQVA 125
             +  R  +A +Q++
Sbjct: 219 TSYCSRRNIAFSQLS 233

[Close]

BLAST of Moc07g22740 vs. TAIR 10
Match: AT5G38190.1 (INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G32010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 6.5e-04
Identity = 28/102 (27.45%), Postives = 50/102 (49.02%), Query Frame = 0


Query: 30  RFSDD-GEDSDASTSGQGLEY------PSRIPEHYLGSLRRRFAIPENILLRIPEEGERA 89
           R++DD  E +D + SG+  +       P+      +G       +P  + +RIP + +R 
Sbjct: 95  RYADDERESADENVSGESRKNEMVDLGPTTSTRESVGRTTDFCLLPGPLTIRIPRDTDRP 154

Query: 90  DNPPEGWVTLYFKMF-EYGLRLPLHPFVQEFLFRTGLAPAQV 124
            + PEG++ L+   F E GLR P+  F+  F     +A +Q+
Sbjct: 155 SDCPEGFICLFEGFFTETGLRFPIPDFLMRFCRNRQIAISQL 196

The following BLAST results are available for this feature:

BLAST of Moc07g22740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159063.1	1.7e-70	92.57	uncharacterized protein LOC111025502, partial [Momordica charantia]	[more]
XP_022158122.1	6.5e-22	100.00	uncharacterized protein LOC111024680 [Momordica charantia]	[more]
XP_022144034.1	6.5e-22	100.00	uncharacterized protein LOC111013826 [Momordica charantia]	[more]
XP_022158650.1	6.5e-22	100.00	uncharacterized protein LOC111025108 [Momordica charantia]	[more]
XP_022155229.1	3.6e-20	94.34	uncharacterized protein LOC111022371 [Momordica charantia]	[more]

BLAST of Moc07g22740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEX8	4.8e-04	38.67	Uncharacterized protein At3g60930, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Moc07g22740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXS5	8.1e-71	92.57	uncharacterized protein LOC111025502 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CR42	3.1e-22	100.00	uncharacterized protein LOC111013826 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DWD2	3.1e-22	100.00	uncharacterized protein LOC111024680 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWF1	3.1e-22	100.00	uncharacterized protein LOC111025108 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DPM7	1.7e-20	94.34	uncharacterized protein LOC111022371 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Moc07g22740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32010.1	5.0e-04	24.78	myosin heavy chain-related	[more]
AT3G42060.1	6.5e-04	30.67	myosin heavy chain-related	[more]
AT5G38190.1	6.5e-04	27.45	INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidops...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF04195	Transposase_28	coord: 92..134 e-value: 1.2E-8 score: 35.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..51
None	No IPR available	PANTHER	PTHR31099	OS06G0165300 PROTEIN	coord: 56..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g22740.1	Moc07g22740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane