Moc07g20340 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g20340
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibosomal protein L23
Locationchr7: 14639050 .. 14640317 (-)
RNA-Seq ExpressionMoc07g20340
SyntenyMoc07g20340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCGCCACAATGATATGTAAGAATCAATGATACTCTTATCAATCACTTTATTACTTGAGTGACTGCATAAAACTAGCCTAAACATGAGATCGGGGACAGGTTCTCTCGACCTCCCCGGGGGGTGGGGGAGTTGGGGCATGACTTTTGTGTTGCGAGTGCATGCGTCCACCATGGTCAGGGTTTTCATAAGTACCTTGTACGTAGTTAAGGTGAAGCTTTGTTTGGTGTTGATTCTAGACTAGACTGAAAATAACCCTATGACTGACCTAGTTGAAATTTGACGTTGATTCGGGAAAAGCGGAATCCGCGGGATAAAAGGTTTGGTTCAGGAGAAAAATGATATGTTAGTTCGGATGTTTAGGTTATCGAAATATTCTCGTTCCACTCGAAAGATTCTTGTTATTGCTTCAATCCATATTCCCCAAAAAAGTGGATCCCGCTCTAATAGCTCTGAATAAATTAAATACATGCATTCAAATGCCAAGCTTTTTCTACATCCACAAGCACTTTTTCACTCTTTAATATACTAGGGGATTTCACTTGGGATTTGGAGAAAGAAGAAGCATGGCATGAGAACGGAAAAATTTTCGATAGCAAATTACTTGACTCGATGGATGGAGGGAGGGCTCCCCAACTCAAGCAAAACTTCTGTCGCTCCATCCCGGCAGGGGCAGAGAACCCATCACTGTCTTGGTTGTGCTACTGGAGGCTCTGGGGAAATTGGAATAGGAGAGCACTCAGGTCAGCTTTCCCGTTCTTGAGGACTTTCTGGCCGGTAGGCTTTATAGCGGACCTGCCTTGCTAACAGGGAGTGACAAGTTTATACAGTCTCCTCGGGTTTCTCATTTAGTAGCTGATAAACGTATTTTGAGATATCTAAAAGCTGACTATTCTAGAAACCTTGCCATTAGTGTCGAGACCAGTCAAAAGGCCTAGAAAGGACAGACTGGACATCGTAAACTGGTCGTTATTGGAGTCACCATTTCCGTAATTCAAGTCCAAGCCTATCAATAAAGGGAAGGCGGGCAGAGAGTTGGCTAAGCCATATTTACCCTGCGGATCATGAGGTCCGCCCGGTTGGGCTCAACCTCAGAGAAAGGTTGAGTGAACAGGAAAGAGAGACTTTCGCCGGCATGGCCACAAGTGGAAGCAACCGATGCTTTGGTCATTCAGTTGACTCCTTGCTGCCAGTCTGTGCTGCACATAGGGCTTCAACACTACTACAGCGCTTTGCTAACTCGAAGCGCCTTGCTATGAGAATCTAG

mRNA sequence

ATGGTCGCCACAATGATATGGGATTTCACTTGGGATTTGGAGAAAGAAGAAGCATGGCATGAGAACGGAAAAATTTTCGATAGCAAATTACTTGACTCGATGGATGGAGGGAGGGCTCCCCAACTCAAGCAAAACTTCTGTCGCTCCATCCCGGCAGGGGCAGAGAACCCATCACTGTCTTGGTTGTGCTACTGGAGGCTCTGGGGAAATTGGAATAGGAGAGCACTCAGTCCAAGCCTATCAATAAAGGGAAGGCGGGCAGAGAGTTGGCTAAGCCATATTTACCCTGCGGATCATGAGGTCCGCCCGGTTGGGCTCAACCTCAGAGAAAGGTTGAGTGAACAGGAAAGAGAGACTTTCGCCGGCATGGCCACAAGTGGAAGCAACCGATGCTTTGGTCATTCAGTTGACTCCTTGCTGCCAGTCTGTGCTGCACATAGGGCTTCAACACTACTACAGCGCTTTGCTAACTCGAAGCGCCTTGCTATGAGAATCTAG

Coding sequence (CDS)

ATGGTCGCCACAATGATATGGGATTTCACTTGGGATTTGGAGAAAGAAGAAGCATGGCATGAGAACGGAAAAATTTTCGATAGCAAATTACTTGACTCGATGGATGGAGGGAGGGCTCCCCAACTCAAGCAAAACTTCTGTCGCTCCATCCCGGCAGGGGCAGAGAACCCATCACTGTCTTGGTTGTGCTACTGGAGGCTCTGGGGAAATTGGAATAGGAGAGCACTCAGTCCAAGCCTATCAATAAAGGGAAGGCGGGCAGAGAGTTGGCTAAGCCATATTTACCCTGCGGATCATGAGGTCCGCCCGGTTGGGCTCAACCTCAGAGAAAGGTTGAGTGAACAGGAAAGAGAGACTTTCGCCGGCATGGCCACAAGTGGAAGCAACCGATGCTTTGGTCATTCAGTTGACTCCTTGCTGCCAGTCTGTGCTGCACATAGGGCTTCAACACTACTACAGCGCTTTGCTAACTCGAAGCGCCTTGCTATGAGAATCTAG

Protein sequence

MVATMIWDFTWDLEKEEAWHENGKIFDSKLLDSMDGGRAPQLKQNFCRSIPAGAENPSLSWLCYWRLWGNWNRRALSPSLSIKGRRAESWLSHIYPADHEVRPVGLNLRERLSEQERETFAGMATSGSNRCFGHSVDSLLPVCAAHRASTLLQRFANSKRLAMRI
Homology
[Close]
BLAST of Moc07g20340 vs. NCBI nr
Match: KAF5822042.1 (hypothetical protein HanXRQr2_Chr01g0021921 [Helianthus annuus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRSIPAGAENPSLSWLCY RLWG+WNRRAL
Sbjct: 57 QNFCRSIPAGAENPSLSWLCYRRLWGSWNRRAL 89

[Close]
BLAST of Moc07g20340 vs. NCBI nr
Match: KAF5774542.1 (hypothetical protein HanXRQr2_Chr13g0601731 [Helianthus annuus])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 42/79 (53.16%), Postives = 48/79 (60.76%), Query Frame = 0 

Query: 44  QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRALSPSL-----SIKGRRAESWLSHIYPA- 103
           QNFCRSIPAGAENPSLS LCY RLWG+WNRRAL   L     +       +WL  +Y   
Sbjct: 57  QNFCRSIPAGAENPSLSRLCYRRLWGSWNRRALILGLAYYLDAFSSYPLRTWLPSVYRGH 116

Query: 104 -DHEVRPV-GLNLRERLSE 115
            + EVRP      RER S+
Sbjct: 117 DNLEVRPSRSSRTRERSSQ 135

[Close]
BLAST of Moc07g20340 vs. NCBI nr
Match: KZM97703.1 (hypothetical protein DCAR_014935 [Daucus carota subsp. sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRSIPAGAENPSLSWLCY RLWG+ NRRAL
Sbjct: 15 QNFCRSIPAGAENPSLSWLCYRRLWGSRNRRAL 47

[Close]
BLAST of Moc07g20340 vs. NCBI nr
Match: KAF5813524.1 (hypothetical protein HanXRQr2_Chr03g0099491 [Helianthus annuus])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRSIPAGAENPSLS LCY RLWG+WNRRAL
Sbjct: 57 QNFCRSIPAGAENPSLSRLCYRRLWGSWNRRAL 89

[Close]
BLAST of Moc07g20340 vs. NCBI nr
Match: KAF5755136.1 (hypothetical protein HanXRQr2_Chr17g0799241 [Helianthus annuus] >KAF5756590.1 hypothetical protein HanXRQr2_Chr17g0816521 [Helianthus annuus] >KAF5796302.1 hypothetical protein HanXRQr2_Chr08g0349851 [Helianthus annuus])

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRSIPAGAENPSLS LCY RLWG+WNRRAL
Sbjct: 57 QNFCRSIPAGAENPSLSRLCYRRLWGSWNRRAL 89

[Close]
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match: A0A165WVC1 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014935 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.2e-08
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRSIPAGAENPSLSWLCY RLWG+ NRRAL
Sbjct: 15 QNFCRSIPAGAENPSLSWLCYRRLWGSRNRRAL 47

[Close]
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match: A0A6J5TQC5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15014 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRS PAGAENPSLSWLCY RLWG+ NRRAL
Sbjct: 57 QNFCRSTPAGAENPSLSWLCYRRLWGSRNRRAL 89

[Close]
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match: A0A6J5XQ66 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15013 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRS PAGAENPSLSWLCY RLWG+ NRRAL
Sbjct: 57 QNFCRSTPAGAENPSLSWLCYRRLWGSRNRRAL 89

[Close]
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match: A0A5E4GMM3 (PREDICTED: cell wall-associated hydrolase OS=Prunus dulcis OX=3755 GN=ALMOND_2B015387 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-08
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 44 QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRAL 77
          QNFCRS PAGAENPSLSWLCY RLWG+ NRRAL
Sbjct: 57 QNFCRSTPAGAENPSLSWLCYRRLWGSRNRRAL 89

[Close]
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match: A0A5C7GQ25 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 36/78 (46.15%), Postives = 41/78 (52.56%), Query Frame = 0 

Query: 44  QNFCRSIPAGAENPSLSWLCYWRLWGNWNRRA----------------LSPSLSIKGRRA 103
           QNFCRSIPAGAENPSLS LCY RLWG+ NRRA                L   L    R  
Sbjct: 57  QNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGH 116

Query: 104 ESWLSHIYPADHEVRPVG 106
           ++W +   P +H   P G
Sbjct: 117 DNWYTRAQPLEHTTAPGG 134

The following BLAST results are available for this feature:
BLAST of Moc07g20340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF5822042.11.1e-0993.94hypothetical protein HanXRQr2_Chr01g0021921 [Helianthus annuus][more]
KAF5774542.11.1e-0953.16hypothetical protein HanXRQr2_Chr13g0601731 [Helianthus annuus][more]
KZM97703.14.5e-0890.91hypothetical protein DCAR_014935 [Daucus carota subsp. sativus][more]
KAF5813524.14.5e-0890.91hypothetical protein HanXRQr2_Chr03g0099491 [Helianthus annuus][more]
KAF5755136.14.5e-0890.91hypothetical protein HanXRQr2_Chr17g0799241 [Helianthus annuus] >KAF5756590.1 hy... [more]
BLAST of Moc07g20340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A165WVC12.2e-0890.91Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014935 ... [more]
A0A6J5TQC58.4e-0887.88Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15014 PE=4 S... [more]
A0A6J5XQ668.4e-0887.88Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS15013 PE=4 S... [more]
A0A5E4GMM38.4e-0887.88PREDICTED: cell wall-associated hydrolase OS=Prunus dulcis OX=3755 GN=ALMOND_2B0... [more]
A0A5C7GQ251.4e-0746.15Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1[more]
BLAST of Moc07g20340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g20340.1Moc07g20340.1mRNA