Moc07g20200 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc07g20200
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr7: 14572679 .. 14573457 (+)
RNA-Seq ExpressionMoc07g20200
SyntenyMoc07g20200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATGCTATATGTCATGGTCATGCTTGTCCAGGGCCTGTTGCCTGTGGTCGCATGCCCATAACAACCTCTTTCCACGTACTTTTATGCCATGTATTTAGTTTTACTTGTTATTTTGTTTTCCTTGTACTTTTGGTGGCGAGTGACTCCTCGCCACTTTTCATGTTCACGCCTGCCAAAGGCAAAATGCTTTATAATCTACCTTAGGGGGGTACACCTAGTCATCCTCCCTACATTGCGTTGTATTCTTGTCTTGCCGCTAATCTATTCTCTTGCATTCAAGCTTACAACAACTTTCTAAAATGCTTTCAAACGTTTTCCAAAACCTTTTTCTCTAACCCCGTTTTCCAAAACCGTTTTCTAGAGAACAGAGGTGGAGGTTGCGACATATAGCCTTTATGCCACCGGCTATTCGTTTCCGCATTGGCTGACTTGCTAGAGGGTGAAAGCAAGTGCCGCACAATCGCTTCGTGAGTCCTGTTAAAGTGTGATTGTGACAGTTGGTATCAGAGCCTAGTTGGCTCCTCGAGTTGGAAAACAGTAACCATGTCCGCGACAAAGCAGTTGGGCAAGTCCACGTCGACAGACTCGTCGAGATCGAAGAACAGCTGTTGTTCTTGAGGGAAATCCCTGACAACCTTAGATATGTGGAATCTCGGCTGGATGAGATCTCCACCAAAGCTGACGGAATTGACGTCGTGAATGCTCGCATAGATGGGCTTGCTATACGGGAGTTAATGCTTCGGGTTGAGGCCCTTGAAGACAAGGTTAAGTGA

mRNA sequence

ATGGAAAATGCTATATGTCATGGTCATGCTTGTCCAGGGCCTGTTGCCTGTGGTCGCATGCCCATAACAACCTCTTTCCACTTGGTATCAGAGCCTAGTTGGCTCCTCGAGTTGGAAAACAGTAACCATGTCCGCGACAAAGCAGTTGGGCAAGTCCACGTCGACAGACTCGTCGAGATCGAAGAACAGCTGTTGTTCTTGAGGGAAATCCCTGACAACCTTAGATATGTGGAATCTCGGCTGGATGAGATCTCCACCAAAGCTGACGGAATTGACGTCGTGAATGCTCGCATAGATGGGCTTGCTATACGGGAGTTAATGCTTCGGGTTGAGGCCCTTGAAGACAAGGTTAAGTGA

Coding sequence (CDS)

ATGGAAAATGCTATATGTCATGGTCATGCTTGTCCAGGGCCTGTTGCCTGTGGTCGCATGCCCATAACAACCTCTTTCCACTTGGTATCAGAGCCTAGTTGGCTCCTCGAGTTGGAAAACAGTAACCATGTCCGCGACAAAGCAGTTGGGCAAGTCCACGTCGACAGACTCGTCGAGATCGAAGAACAGCTGTTGTTCTTGAGGGAAATCCCTGACAACCTTAGATATGTGGAATCTCGGCTGGATGAGATCTCCACCAAAGCTGACGGAATTGACGTCGTGAATGCTCGCATAGATGGGCTTGCTATACGGGAGTTAATGCTTCGGGTTGAGGCCCTTGAAGACAAGGTTAAGTGA

Protein sequence

MENAICHGHACPGPVACGRMPITTSFHLVSEPSWLLELENSNHVRDKAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELMLRVEALEDKVK
Homology
[Close]
BLAST of Moc07g20200 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0 

Query: 47  KAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 106
           K +G+ H+DRLVEIEE+LLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL
Sbjct: 5   KQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 64

Query: 107 MLRVEALEDKVK 119
           MLRVE LEDKVK
Sbjct: 65  MLRVETLEDKVK 76

[Close]
BLAST of Moc07g20200 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 47  KAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 106
           K + + HVDRLVEIEEQLL+LRE+PD LR +E+R+DE S K   ID VNARIDGL I+++
Sbjct: 5   KQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLPIQDI 64

Query: 107 MLRVEALEDK 117
            +RVE LE K
Sbjct: 65  AMRVETLESK 74

[Close]
BLAST of Moc07g20200 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 47  KAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 106
           K + + HVDRLVEIEEQLL+LRE+PD+LR +E+R+DE S K   ID VNAR+DGL I+++
Sbjct: 5   KQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDI 64

Query: 107 MLRVEALEDK 117
            +RVE  E K
Sbjct: 65  AMRVETXESK 74

[Close]
BLAST of Moc07g20200 vs. NCBI nr
Match: KAA0061346.1 (uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa] >TYK14699.1 uncharacterized protein E5676_scaffold692G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-13
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 50  GQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELMLR 109
           G+   DRLVEIEEQ+L+L E+PD++RY+ESR+DEIS KAD ID V  R++GL I+EL+ R
Sbjct: 8   GKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLPIQELLAR 67

Query: 110 VEALED 116
           V+ALE+
Sbjct: 68  VDALEE 73

[Close]
BLAST of Moc07g20200 vs. NCBI nr
Match: KAA0039111.1 (uncharacterized protein E6C27_scaffold84G002140 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-13
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 50  GQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELMLR 109
           G+   DRLVEIEEQ+L+L E+PD++RY+ESR+DEIS KAD ID V  R++GL I+EL+ R
Sbjct: 8   GKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLPIQELLAR 67

Query: 110 VEALED 116
           V+ALE+
Sbjct: 68  VDALEE 73

[Close]
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.9e-26
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0 

Query: 47  KAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 106
           K +G+ H+DRLVEIEE+LLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL
Sbjct: 5   KQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 64

Query: 107 MLRVEALEDKVK 119
           MLRVE LEDKVK
Sbjct: 65  MLRVETLEDKVK 76

[Close]
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match: A0A6J1D906 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 47  KAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 106
           K + + HVDRLVEIEEQLL+LRE+PD LR +E+R+DE S K   ID VNARIDGL I+++
Sbjct: 5   KQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLPIQDI 64

Query: 107 MLRVEALEDK 117
            +RVE LE K
Sbjct: 65  AMRVETLESK 74

[Close]
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match: A0A6J1DK29 (uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021829 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 0 

Query: 47  KAVGQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIREL 106
           K + + HVDRLVEIEEQLL+LRE+PD+LR +E+R+DE S K   ID VNAR+DGL I+++
Sbjct: 5   KQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLPIQDI 64

Query: 107 MLRVEALEDK 117
            +RVE  E K
Sbjct: 65  AMRVETXESK 74

[Close]
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match: A0A5A7V4C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00280 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 50  GQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELMLR 109
           G+   DRLVEIEEQ+L+L E+PD++RY+ESR+DEIS KAD ID V  R++GL I+EL+ R
Sbjct: 8   GKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLPIQELLAR 67

Query: 110 VEALED 116
           V+ALE+
Sbjct: 68  VDALEE 73

[Close]
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match: A0A5A7TBW6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G002140 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.1e-13
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 50  GQVHVDRLVEIEEQLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELMLR 109
           G+   DRLVEIEEQ+L+L E+PD++RY+ESR+DEIS KAD ID V  R++GL I+EL+ R
Sbjct: 8   GKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLPIQELLAR 67

Query: 110 VEALED 116
           V+ALE+
Sbjct: 68  VDALEE 73

The following BLAST results are available for this feature:
BLAST of Moc07g20200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155185.11.0e-2590.28uncharacterized protein LOC111022320 [Momordica charantia][more]
XP_022150099.16.8e-1462.86uncharacterized protein LOC111018360 [Momordica charantia][more]
XP_022154605.11.2e-1360.00uncharacterized protein LOC111021829 [Momordica charantia][more]
KAA0061346.14.4e-1362.12uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0039111.14.4e-1362.12uncharacterized protein E6C27_scaffold84G002140 [Cucumis melo var. makuwa][more]
BLAST of Moc07g20200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLQ64.9e-2690.28uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1D9063.3e-1462.86Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111018360 PE=4 SV=1[more]
A0A6J1DK295.6e-1460.00uncharacterized protein LOC111021829 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5A7V4C92.1e-1362.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TBW62.1e-1362.12Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Moc07g20200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc07g20200.1Moc07g20200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008270 zinc ion binding