Moc07g01750 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc07g01750
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr7: 1370420 .. 1373662 (+)
RNA-Seq Expression	Moc07g01750
Synteny	Moc07g01750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGAGGTCGCAAGCCCGACACCGCTGGTTGCATTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACACTTGGGCAGGACCAAACTCAGGTCACCCAAATGGCCGAGTTCGTGGTAATTGACGGTAGATCGGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTCGGGCCATTCCCTCGACACTTCATCAAGTTTTGAAGTATTCCACCGCCAATGGCGTGGGCACGGTCCGAGGAGAACAGACCGCTTCGAGGGAGTGCTATGTCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCAGTAGGGATGAGACGCTCGAGTTCAAGGCCGACTTGCCGAGGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTACTTAGTCCCGAGAAGCAGGTAAGCATAGGAACTAAGCTGGGGGCCACCGACAGAGAGGAGCTAATCCACTTCCTCAGATCCAACTCGGACGTCTTTGCGTGGTCCCATGAGGACATGCCTGGCATTGACCCGAAGATTATGACGCATCGCCTCAGCATAGATCCGACATTCCGACCTGTAAAACAAAAAAGAAGACCTATAAACAAGGAGAGGAGTGATGTAATTGTTGAGGAAGTTAGCAAACTTTTGAAAGCTAAATACATAAGAGAAATTTCGTATCCCGAGTGGCTCTCCAATGTTGTATTAGTTAAAAAATCTAACAGAAAGTGGAGAATGTGCGTAGACTTTACGAACTTAAATAAGTCATGCCCGAAAGATTGCTTCCCACTGCCGAGGATTGATCAGCTCGTGGATGCCACAGCCGGGCACGAACTGCTCACCTTCATGGATGCCTACTCTGGGTACAACCAAATCAAGATGCATGTCCCAGATCAAGATCATACCGCATTCATAACAGACCAAGGTCTGTACTGTTACAAGGTCATGCCCTTCGGTTTAAAGAACGCATGAGCGACCTACCAGAGAATGGTGAACAAAATGTTCGCCAAGTAGATCGGCCGGAATATGGAAGTGTATGTGGACGACATGCTCGTCAAGAGCAAGCGGTCTAAGTTGCATCTTTCCGATCTGACCGAAGCCTTCGAGGTTCTAAGGACATATCAAATGAAGCTCAACCCAGCTAAATGTGCCTTTGGAGTCTCTTCGGGAAAATTCCTTAGCTTCATGGTGAACCACCGGGGGATCGAGGCCAACCCCGAAAAGATTAAAGCCGTGCTCAAGATGGAGGCACCCAAAACGCTGAAACAGCTTCAGTGCCTCAATGGCAGGATTGCAGCCCTGAACCGGTTTGTTTCAAGATCGACAGATAAGTGCCTCCCTTTTTTCAAAGTCCTACGAAAGAAAGGGCCGTTTGAATGGACAGCAGAGTGCGAACAAGCATTTCAGCAATTGAAGAGCTACCTCTGTTCGGCACCTTTGCTCGTCAAGCCCGTGCCATGGGACAAGCTCCAGTTATACTTAGCAGTGTCTGACAGTGCCGTCAGCTCGGCCCTAATCAGGCAAGAGGAAGCGCGGCAAAACCCGGTCTACTACACAAGCAAGGCTATGACCGAAGCCGAGACTAGATACCCTCAGATGGAAAAGTTGGCTCTAGCTTTAGTCACCTTGGCCCGACGGCTTAGACCATACTTCCAAGCCCATACTGTGGTGGTGCTCAATAACTTGCCCCTAAAAAACATCTTCCATAAGCCAGAAGCTTCTGGACGCCTGATGAAGTGGGCAATGGAGCTAAGTGAGTACGACATCCAGTTCGAACCCAGAGCTGCGTTGAAAGGGCAAGCAGTGGCAGACTTCATAGCCGAGCTCACACCACCTTCCGAGCCTGGCGAGTCCGACCTACCGTGGACAATCTACGTCGACGGATCCTCCAATGAGAAGGGGTGCGGGGCCGGGGTCCTCTTTCTCGGACCAGGAGGCGAGCGATTTGAGTATGCCTTGAGGTTCGGCTTCCGGACTTCCAATAACGAGGCTGAGTATGAAGCATTTATTGCCGGTCTACGAATCGCCAGAGCATTGGGGGTCTCTTGTGTTAAGATCTTCAGCGACTCCCAGCTGGTTGTGAGCCAGATCACAGAAGAGTACCAAGCTAGGGAATCCCGAATGGAGAAGTATTTGGGCAAGGTCAGATCGTACCTCGCCCAATTTCGAACTTACGAGGTAAGTCGGGTTCCCCAAGCAGAAAATTCTAATGCCGACGCCTTGGCCAAGTTAGCATCAGCGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCGAGATCTTAGATGATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGACGATCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCAAGGCAAGCATCTCGGTTCGTGGTTCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAAATACCTAACCCCTGAAGAGGGCCTATACGTCCTCAGAGAAATCCAGGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACAGAAACATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGCCATTCGCAAAGAGAATCGGCGGGTGAAACCCCGTTCTCCCTGGCCTTCGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTACAACATTATGAGCCTATAGCAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCGGAATGGCCAGACACTACAATGCCCGCGTTCGACCTCGGAACTTCCAAGTCGGACATCTGGTCTTAAGGAAGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTCAAATGCCAAAATGGTTTTCAATGGATCTGTAAAAACTGTTTCAAAAGAATTATGA

mRNA sequence

ATGGACGAGGTCGCAAGCCCGACACCGCTGGTTGCATTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACACTTGGGCAGGACCAAACTCAGGTCACCCAAATGGCCGAGTTCGTGGTAATTGACGGTAGATCGGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTCGGGCCATTCCCTCGACACTTCATCAAGTTTTGAAGTATTCCACCGCCAATGGCGTGGGCACGGTCCGAGGAGAACAGACCGCTTCGAGGGAGTGCTATGTCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCAGTAGGGATGAGACGCTCGAGTTCAAGGCCGACTTGCCGAGGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTACTTAGTCCCGAGAAGCAGTTAGCATCAGCGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCGAGATCTTAGATGATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGACGATCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCAAGGCAAGCATCTCGGTTCGTGGTTCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAAATACCTAACCCCTGAAGAGGGCCTATACGTCCTCAGAGAAATCCAGGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACAGAAACATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGCCATTCGCAAAGAGAATCGGCGGGTGAAACCCCGTTCTCCCTGGCCTTCGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTACAACATTATGAGCCTATAGCAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCGGAATGGCCAGACACTACAATGCCCGCGTTCGACCTCGGAACTTCCAAGTCGGACATCTGGTCTTAAGGAAGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTCAAATGCCAAAATGGTTTTCAATGGATCTGTAAAAACTGTTTCAAAAGAATTATGA

Coding sequence (CDS)

ATGGACGAGGTCGCAAGCCCGACACCGCTGGTTGCATTCTCTGGAGAATCGGTCATCCCAGAGGGTTGCATCGACTTGCCGGTCACACTTGGGCAGGACCAAACTCAGGTCACCCAAATGGCCGAGTTCGTGGTAATTGACGGTAGATCGGCCTATAACGCCATCTTTGGGAGACCCATCATCCACTCATTTCGGGCCATTCCCTCGACACTTCATCAAGTTTTGAAGTATTCCACCGCCAATGGCGTGGGCACGGTCCGAGGAGAACAGACCGCTTCGAGGGAGTGCTATGTCTCCGCACTCAAAGGCTCATCGGTCTGCGCCCTCGAAACTCTCGCCAGTAGGGATGAGACGCTCGAGTTCAAGGCCGACTTGCCGAGGAGGGAGTTTGCCGCACCCACTGAGGAGCTCGAGCTTGTTCCTCTACTTAGTCCCGAGAAGCAGTTAGCATCAGCGTACGAGACCGACCTGGCCAGGTCGGTCCCCGTCGAGATCTTAGATGATCCCTCGATCTCAGAGCCAGATCTGATGGAGATCGACGATCCAGAGTCCTCATGGATGGACCCGATTGTGGACTTCATTAGGGGCAATTCACCACAAGACCCCAAGGAGCGCAGAAGGTTGGCAAGGCAAGCATCTCGGTTCGTGGTTCGAGGTGGAGCGTTGTACCGACGCGGCTTTTCCCTGCCTCTATTGAAATACCTAACCCCTGAAGAGGGCCTATACGTCCTCAGAGAAATCCAGGAAGGAGTGTGCGGCAATCACTCAGGCGCCCGGTCGCTGTCAGCCAAAGTGATCCGACAAGGATACTATTGGCCGACCCTCAGCCAGGACGCCAAGAAGTTCGTTAGAACTTGCGACAATTGCCAACGCTACAGAAACATAATCCACCAACCTCCCGAGCTGCTCACCCCCATCTCGGCCCCGTGGCCATTCGCGCAGTGGGGCCATTCGCAAAGAGAATCGGCGGGTGAAACCCCGTTCTCCCTGGCCTTCGGCTCCGAAGCTGTAGTCCCGGTTGAGATCGGCATGCCATCTGACAGAGTACAACATTATGAGCCTATAGCAAATGAGGAAGAGCTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCGGAATGGCCAGACACTACAATGCCCGCGTTCGACCTCGGAACTTCCAAGTCGGACATCTGGTCTTAAGGAAGGTCCAAACCCATGTGGGTGCCCTTGACCCGACCTGGGAGGGGCCGTTTGAGGTCAAGGGAATAGTCCGACCTGGGACGTACATATTGGCCGATCTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCGGAGCACCTGAAGCGTTATTATCCTTCAAATGCCAAAATGGTTTTCAATGGATCTGTAAAAACTGTTTCAAAAGAATTATGA

Protein sequence

MDEVASPTPLVAFSGESVIPEGCIDLPVTLGQDQTQVTQMAEFVVIDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTANGVGTVRGEQTASRECYVSALKGSSVCALETLASRDETLEFKADLPRREFAAPTEELELVPLLSPEKQLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRRLARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWGHSQRESAGETPFSLAFGSEAVVPVEIGMPSDRVQHYEPIANEEELLLNLDLLEERRAMAQLRLAEYQGGMARHYNARVRPRNFQVGHLVLRKVQTHVGALDPTWEGPFEVKGIVRPGTYILADLKGDVLAHPWNAEHLKRYYPSNAKMVFNGSVKTVSKEL

Homology

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BLAST of Moc07g01750 vs. NCBI nr
Match: XP_022158219.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 477.2 bits (1227), Expect = 1.6e-130
Identity = 249/335 (74.33%), Postives = 259/335 (77.31%), Query Frame = 0


Query: 40  MAEFVVIDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTANGVGTVRGEQTASRECYVS 99
           MAEFVVIDGRSAYNAIFGRPIIHSFR +PSTLHQVLKYST NGVGTVRGEQTASRECY S
Sbjct: 1   MAEFVVIDGRSAYNAIFGRPIIHSFRVVPSTLHQVLKYSTPNGVGTVRGEQTASRECYAS 60

Query: 100 ALKGSSVCALETLASRDETLEFKADLPRREFAAPTEELELVPLLSPEKQ----------- 159
           ALKGSSVCALE  AS +ETLEFKADLPRREF+APTEELELVPLLS EKQ           
Sbjct: 61  ALKGSSVCALEAHASGNETLEFKADLPRREFSAPTEELELVPLLSLEKQVFNDSQLVVSQ 120

Query: 160 -----------------------------------------------LASAYETDLARSV 219
                                                          LASAYETDLARSV
Sbjct: 121 IKDEYQAKDTRMEKYLGKVRSYLAQFLTYEVSRIPRAENSNADALAKLASAYETDLARSV 180

Query: 220 PVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRRLARQASRFVVRGGA 279
           PVEILD+PSISEPDLMEI  PESSWMDPI DFIRGNSPQDPKERR+LA + +RFVVR GA
Sbjct: 181 PVEILDNPSISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGA 240

Query: 280 LYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKK 317
           LYRRGFSLPLL+ LTPEEGLYVLRE+ EGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKK
Sbjct: 241 LYRRGFSLPLLRCLTPEEGLYVLREVHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKK 300

[Close]

BLAST of Moc07g01750 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 369.8 bits (948), Expect = 3.6e-98
Identity = 191/415 (46.02%), Postives = 248/415 (59.76%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDF-IRGNSPQDPKERR 207
           +LASAY+TDL R+VPVEIL + S+ +P+LMEI   + +WMDPI DF + G+ P DP + R
Sbjct: 430 RLASAYDTDLPRTVPVEILTESSVDQPELMEITSAQPTWMDPIKDFLVNGSVPADPSQAR 489

Query: 208 RLARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVI 267
           +L RQA+ ++++ G L++RG+SLPLL+ L PEE  YV+REI EGVCGNH GA+S++AKV+
Sbjct: 490 KLRRQAAHYLMQEGKLFKRGYSLPLLRCLDPEEARYVMREIHEGVCGNHGGAKSMAAKVV 549

Query: 268 RQGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWG---------- 327
           RQGYYW T+ +D K+F +TCD CQR+ +I+ QPPE+LT IS+PWPFAQWG          
Sbjct: 550 RQGYYWLTIERDTKEFAKTCDKCQRFASILRQPPEMLTLISSPWPFAQWGIDLIGPLPMG 609

Query: 328 ---------------------------------------------------HSQ------ 387
                                                              H Q      
Sbjct: 610 KGQLKFAIVAVDYFTKWVEAEPLASFIEFDGARFNQFCQQLGIRHLSSSPAHLQSNGQVE 669

Query: 388 ------------------------------------RESAGETPFSLAFGSEAVVPVEIG 447
                                               R S GETP+ LAFGSEAVVP E+G
Sbjct: 670 AINKIIKRGLKTRLESLKGQWAEELPEVLWSYRTTPRRSTGETPYGLAFGSEAVVPAEVG 729

Query: 448 MPSDRVQHYEPIANEEELLLNLDLLEERRAMAQLRLAEYQGGMARHYNARVRPRNFQVGH 459
           MP+ RV++++  AN E LL+NLDLLEE+R+ +QLRLAEYQ  MAR+YNARV+ R F+   
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSD 789

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BLAST of Moc07g01750 vs. NCBI nr
Match: XP_022156575.1 (uncharacterized protein LOC111023451 [Momordica charantia])

HSP 1 Score: 342.0 bits (876), Expect = 8.0e-90
Identity = 194/363 (53.44%), Postives = 208/363 (57.30%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRR 207
           +LASAYETDLARSVPVEILD+PSI EPDLME+  PESSWMDPI DFIRGNSPQDPKERR+
Sbjct: 221 KLASAYETDLARSVPVEILDNPSILEPDLMEVGAPESSWMDPITDFIRGNSPQDPKERRK 280

Query: 208 LARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIR 267
           LAR+ +R VVR GALYRRGFSLPLLK LTPEEGLYVLREI EGVCGNHSGARSLSAKVIR
Sbjct: 281 LARRTARLVVRDGALYRRGFSLPLLKCLTPEEGLYVLREIHEGVCGNHSGARSLSAKVIR 340

Query: 268 QGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWG----------- 327
           QGYYWPTLSQDAK+FVRTCDNCQRY  II QPPELLTPISAPWPFAQWG           
Sbjct: 341 QGYYWPTLSQDAKQFVRTCDNCQRYGTIIRQPPELLTPISAPWPFAQWGVDIIGHFPLGK 400

Query: 328 ------------------------------------------------------------ 380
                                                                       
Sbjct: 401 GQTKFAVVAVDYFTKWVEAEALSHITESRVTSFVWTNIICRFGIPQAIVTDNGKQFDNAK 460

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BLAST of Moc07g01750 vs. NCBI nr
Match: XP_022157799.1 (uncharacterized protein LOC111024419 [Momordica charantia])

HSP 1 Score: 334.0 bits (855), Expect = 2.2e-87
Identity = 191/366 (52.19%), Postives = 207/366 (56.56%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRR 207
           +LASAYETDL RSVPVEILD+PSI EPD MEID  E SWMDPI DFIRGNSPQDPKE ++
Sbjct: 344 KLASAYETDLVRSVPVEILDNPSILEPDQMEIDALEPSWMDPIADFIRGNSPQDPKEHKK 403

Query: 208 LARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIR 267
           +AR+A+ F++R GALYRR FSLPLLK LT EEGLYVL+EI EG+CGNHSGARSLSAKV+R
Sbjct: 404 MARKAAPFIIRDGALYRRNFSLPLLKCLTLEEGLYVLKEIHEGLCGNHSGARSLSAKVVR 463

Query: 268 QGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWG----------- 327
           QGYYWPTL QDAK+FVRT DNCQR+ NIIHQPPELLTPISA WPF QWG           
Sbjct: 464 QGYYWPTLDQDAKEFVRTFDNCQRFGNIIHQPPELLTPISALWPFVQWGIDIIGPFLLGK 523

Query: 328 ------------------------------------------------------------ 383
                                                                       
Sbjct: 524 GHTKFAVVAVDYFTKWAEAGVLSHITESRVTSFVWVNIVCRFGIPHAIVTDNEKQFDNVN 583

[Close]

BLAST of Moc07g01750 vs. NCBI nr
Match: XP_022149378.1 (uncharacterized protein LOC111017809 [Momordica charantia])

HSP 1 Score: 327.8 bits (839), Expect = 1.6e-85
Identity = 226/552 (40.94%), Postives = 268/552 (48.55%), Query Frame = 0


Query: 40  MAEFVVIDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTANGVGTVRGEQTASRECYVS 99
           MAEFVVID RSAYNAIFGRP+IHS RA+PSTLHQ LKYST NGVG VRGEQ  SRECY S
Sbjct: 1   MAEFVVIDRRSAYNAIFGRPVIHSLRAVPSTLHQALKYSTPNGVGIVRGEQRMSRECYAS 60

Query: 100 ALKGSSVCALETLASRDETLEFKADLP---RREFAAPTEELELVPLLSPEKQ-------- 159
           ALKG SVCALE  A  D++LE KADLP   +REF A TEELELVPLLSPE+Q        
Sbjct: 61  ALKGLSVCALEEQAGWDKSLESKADLPQVGKREFFATTEELELVPLLSPERQVSIGTKLG 120

Query: 160 ------------------------------------------------------------ 219
                                                                       
Sbjct: 121 ATDREEFINFLRTNSNVFAWSHENMPGIDPKIMAEYEALLAGLRVAKGLRAVHIKVFSDS 180

Query: 220 -----------------------------------------------------LASAYET 279
                                                                LASAYET
Sbjct: 181 QLVVNQIREKYQAKDSRMEKYLTKVRSHLAQLKTYEVNQVPRSENSNADALAKLASAYET 240

Query: 280 DLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRRLARQASRF 339
           DLARSVPVEILD+PSI EPDLME+D P  SWMD IV+FI+GN PQDPKE +++AR+ ++F
Sbjct: 241 DLARSVPVEILDNPSILEPDLMEVDTPTPSWMDLIVEFIKGNLPQDPKEHKKMARKVAQF 300

Query: 340 VVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGAR--------------SL 372
           ++R GALYR+GFSLPLLK +TPE+G Y++REI EGVCGNHSGAR               +
Sbjct: 301 ILRDGALYRQGFSLPLLKCVTPEDGNYIIREIHEGVCGNHSGARHYPSASRAAHPYLGPM 360

[Close]

BLAST of Moc07g01750 vs. ExPASy Swiss-Prot
Match: Q5RBK0 (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-08
Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 202 PKERRRLARQASRFVVRGGALYRRGFSLP--LLKYLTPEEGLYVLREIQEGVCGNHSGAR 261
           P ERR + R A +FV +   L+  G       L  ++ EE   VLRE  E   G H G  
Sbjct: 30  PSERRGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGI- 89

Query: 262 SLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYRN-IIHQPPELLTPISAPW 311
           S +  ++   YYW +++ D K++V  C +CQ  +N +I  P + L  +  PW
Sbjct: 90  SRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPW 140

[Close]

BLAST of Moc07g01750 vs. ExPASy Swiss-Prot
Match: Q8K259 (Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-08
Identity = 37/112 (33.04%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 202 PKERRRLARQASRFVVRGGALYRRGFSLP--LLKYLTPEEGLYVLREIQEGVCGNHSGAR 261
           P ER  + R A +FV +   L+  G       L  ++ EE   VLRE  E   G H G  
Sbjct: 30  PSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEKKKVLRECHENGPGVHHGI- 89

Query: 262 SLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYRN-IIHQPPELLTPISAPW 311
           S +  ++  GYYW +++ D K++V  C +CQ  +N +I  P + L  +  PW
Sbjct: 90  SRTLTLVESGYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPQQHLPMVGNPW 140

[Close]

BLAST of Moc07g01750 vs. ExPASy Swiss-Prot
Match: Q4R6I1 (Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.1e-08
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 202 PKERRRLARQASRFVVRGGALYRRGFSLP--LLKYLTPEEGLYVLREIQEGVCGNHSGAR 261
           P ER  + R A +FV +   L+  G       L  ++ EE   VLRE  E   G H G  
Sbjct: 30  PSERSGIRRAAKKFVFKDKKLFYVGEDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGI- 89

Query: 262 SLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYRN-IIHQPPELLTPISAPW 311
           S +  ++   YYW +++ D K++V  C +CQ  +N +I  P + L  +  PW
Sbjct: 90  SRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPW 140

[Close]

BLAST of Moc07g01750 vs. ExPASy Swiss-Prot
Match: Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 8.0e-08
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 0


Query: 202 PKERRRLARQASRFVVRGGALYRRGFSLP--LLKYLTPEEGLYVLREIQEGVCGNHSGAR 261
           P ER  + R A +FV +   L+  G       L  ++ EE   VLRE  E   G H G  
Sbjct: 30  PSERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVIVSEEEKKKVLRECHENDSGAHHGI- 89

Query: 262 SLSAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYRN-IIHQPPELLTPISAPW 311
           S +  ++   YYW +++ D K++V  C +CQ  +N +I  P + L  +  PW
Sbjct: 90  SRTLTLVESNYYWTSVTNDVKQWVYACQHCQVAKNTVIVAPKQHLLKVENPW 140

[Close]

BLAST of Moc07g01750 vs. ExPASy Swiss-Prot
Match: Q66H30 (Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.6e-06
Identity = 34/110 (30.91%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 204 ERRRLARQASRFVVRGGALYRRGFSLP--LLKYLTPEEGLYVLREIQEGVCGNHSGARSL 263
           ER  + R A +FV +   L+  G       L  ++ EE   VLRE  E   G H G  S 
Sbjct: 32  ERSGIRRAAKKFVFKEKKLFYVGKDRKQNRLVVVSEEEKKKVLRECHENGPGVHHGI-SR 91

Query: 264 SAKVIRQGYYWPTLSQDAKKFVRTCDNCQRYRN-IIHQPPELLTPISAPW 311
           +  ++   YYW +++ D K++V  C +CQ  ++ +I  P + L+ +  PW
Sbjct: 92  TLTLVESSYYWTSVTNDVKQWVYACQHCQVAKSTVIVAPQQHLSVVGNPW 140

[Close]

BLAST of Moc07g01750 vs. ExPASy TrEMBL
Match: A0A6J1DYS0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 7.7e-131
Identity = 249/335 (74.33%), Postives = 259/335 (77.31%), Query Frame = 0


Query: 40  MAEFVVIDGRSAYNAIFGRPIIHSFRAIPSTLHQVLKYSTANGVGTVRGEQTASRECYVS 99
           MAEFVVIDGRSAYNAIFGRPIIHSFR +PSTLHQVLKYST NGVGTVRGEQTASRECY S
Sbjct: 1   MAEFVVIDGRSAYNAIFGRPIIHSFRVVPSTLHQVLKYSTPNGVGTVRGEQTASRECYAS 60

Query: 100 ALKGSSVCALETLASRDETLEFKADLPRREFAAPTEELELVPLLSPEKQ----------- 159
           ALKGSSVCALE  AS +ETLEFKADLPRREF+APTEELELVPLLS EKQ           
Sbjct: 61  ALKGSSVCALEAHASGNETLEFKADLPRREFSAPTEELELVPLLSLEKQVFNDSQLVVSQ 120

Query: 160 -----------------------------------------------LASAYETDLARSV 219
                                                          LASAYETDLARSV
Sbjct: 121 IKDEYQAKDTRMEKYLGKVRSYLAQFLTYEVSRIPRAENSNADALAKLASAYETDLARSV 180

Query: 220 PVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRRLARQASRFVVRGGA 279
           PVEILD+PSISEPDLMEI  PESSWMDPI DFIRGNSPQDPKERR+LA + +RFVVR GA
Sbjct: 181 PVEILDNPSISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRKLAWRVARFVVRDGA 240

Query: 280 LYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKK 317
           LYRRGFSLPLL+ LTPEEGLYVLRE+ EGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKK
Sbjct: 241 LYRRGFSLPLLRCLTPEEGLYVLREVHEGVCGNHSGARSLSAKVIRQGYYWPTLSQDAKK 300

[Close]

BLAST of Moc07g01750 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 1.7e-98
Identity = 191/415 (46.02%), Postives = 248/415 (59.76%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDF-IRGNSPQDPKERR 207
           +LASAY+TDL R+VPVEIL + S+ +P+LMEI   + +WMDPI DF + G+ P DP + R
Sbjct: 430 RLASAYDTDLPRTVPVEILTESSVDQPELMEITSAQPTWMDPIKDFLVNGSVPADPSQAR 489

Query: 208 RLARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVI 267
           +L RQA+ ++++ G L++RG+SLPLL+ L PEE  YV+REI EGVCGNH GA+S++AKV+
Sbjct: 490 KLRRQAAHYLMQEGKLFKRGYSLPLLRCLDPEEARYVMREIHEGVCGNHGGAKSMAAKVV 549

Query: 268 RQGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWG---------- 327
           RQGYYW T+ +D K+F +TCD CQR+ +I+ QPPE+LT IS+PWPFAQWG          
Sbjct: 550 RQGYYWLTIERDTKEFAKTCDKCQRFASILRQPPEMLTLISSPWPFAQWGIDLIGPLPMG 609

Query: 328 ---------------------------------------------------HSQ------ 387
                                                              H Q      
Sbjct: 610 KGQLKFAIVAVDYFTKWVEAEPLASFIEFDGARFNQFCQQLGIRHLSSSPAHLQSNGQVE 669

Query: 388 ------------------------------------RESAGETPFSLAFGSEAVVPVEIG 447
                                               R S GETP+ LAFGSEAVVP E+G
Sbjct: 670 AINKIIKRGLKTRLESLKGQWAEELPEVLWSYRTTPRRSTGETPYGLAFGSEAVVPAEVG 729

Query: 448 MPSDRVQHYEPIANEEELLLNLDLLEERRAMAQLRLAEYQGGMARHYNARVRPRNFQVGH 459
           MP+ RV++++  AN E LL+NLDLLEE+R+ +QLRLAEYQ  MAR+YNARV+ R F+   
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSD 789

[Close]

BLAST of Moc07g01750 vs. ExPASy TrEMBL
Match: A0A6J1DQP4 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.9e-90
Identity = 194/363 (53.44%), Postives = 208/363 (57.30%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRR 207
           +LASAYETDLARSVPVEILD+PSI EPDLME+  PESSWMDPI DFIRGNSPQDPKERR+
Sbjct: 221 KLASAYETDLARSVPVEILDNPSILEPDLMEVGAPESSWMDPITDFIRGNSPQDPKERRK 280

Query: 208 LARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIR 267
           LAR+ +R VVR GALYRRGFSLPLLK LTPEEGLYVLREI EGVCGNHSGARSLSAKVIR
Sbjct: 281 LARRTARLVVRDGALYRRGFSLPLLKCLTPEEGLYVLREIHEGVCGNHSGARSLSAKVIR 340

Query: 268 QGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWG----------- 327
           QGYYWPTLSQDAK+FVRTCDNCQRY  II QPPELLTPISAPWPFAQWG           
Sbjct: 341 QGYYWPTLSQDAKQFVRTCDNCQRYGTIIRQPPELLTPISAPWPFAQWGVDIIGHFPLGK 400

Query: 328 ------------------------------------------------------------ 380
                                                                       
Sbjct: 401 GQTKFAVVAVDYFTKWVEAEALSHITESRVTSFVWTNIICRFGIPQAIVTDNGKQFDNAK 460

[Close]

BLAST of Moc07g01750 vs. ExPASy TrEMBL
Match: A0A6J1DXK8 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024419 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 1.1e-87
Identity = 191/366 (52.19%), Postives = 207/366 (56.56%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRR 207
           +LASAYETDL RSVPVEILD+PSI EPD MEID  E SWMDPI DFIRGNSPQDPKE ++
Sbjct: 344 KLASAYETDLVRSVPVEILDNPSILEPDQMEIDALEPSWMDPIADFIRGNSPQDPKEHKK 403

Query: 208 LARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIR 267
           +AR+A+ F++R GALYRR FSLPLLK LT EEGLYVL+EI EG+CGNHSGARSLSAKV+R
Sbjct: 404 MARKAAPFIIRDGALYRRNFSLPLLKCLTLEEGLYVLKEIHEGLCGNHSGARSLSAKVVR 463

Query: 268 QGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWG----------- 327
           QGYYWPTL QDAK+FVRT DNCQR+ NIIHQPPELLTPISA WPF QWG           
Sbjct: 464 QGYYWPTLDQDAKEFVRTFDNCQRFGNIIHQPPELLTPISALWPFVQWGIDIIGPFLLGK 523

Query: 328 ------------------------------------------------------------ 383
                                                                       
Sbjct: 524 GHTKFAVVAVDYFTKWAEAGVLSHITESRVTSFVWVNIVCRFGIPHAIVTDNEKQFDNVN 583

[Close]

BLAST of Moc07g01750 vs. ExPASy TrEMBL
Match: A0A6J1CQD7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-84
Identity = 162/194 (83.51%), Postives = 170/194 (87.63%), Query Frame = 0


Query: 148 QLASAYETDLARSVPVEILDDPSISEPDLMEIDDPESSWMDPIVDFIRGNSPQDPKERRR 207
           +LASAYETDLARSVPVEILD+PSISEPDLMEI  PESSWMDPI DFIRGNSPQDPKERR+
Sbjct: 221 KLASAYETDLARSVPVEILDNPSISEPDLMEIGAPESSWMDPIADFIRGNSPQDPKERRK 280

Query: 208 LARQASRFVVRGGALYRRGFSLPLLKYLTPEEGLYVLREIQEGVCGNHSGARSLSAKVIR 267
           LAR+A+RFVVR GALYRRGFSLPLL+ LTPEEGLYVLREI EGVCGNHSGARSLSAKVIR
Sbjct: 281 LARRAARFVVRDGALYRRGFSLPLLRCLTPEEGLYVLREIHEGVCGNHSGARSLSAKVIR 340

Query: 268 QGYYWPTLSQDAKKFVRTCDNCQRYRNIIHQPPELLTPISAPWPFAQWGHSQRESAGETP 327
           QGYYWPTLSQDAKKFVRTCDNCQRY  IIHQPPELLTPISAPWPFAQWG    +  G  P
Sbjct: 341 QGYYWPTLSQDAKKFVRTCDNCQRYGTIIHQPPELLTPISAPWPFAQWG---VDIIGPFP 400

Query: 328 FSLAFGSEAVVPVE 342
            S      AVV V+
Sbjct: 401 LSKGQTKFAVVAVD 411

The following BLAST results are available for this feature:

BLAST of Moc07g01750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158219.1	1.6e-130	74.33	protein NYNRIN-like [Momordica charantia]	[more]
XP_022156986.1	3.6e-98	46.02	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022156575.1	8.0e-90	53.44	uncharacterized protein LOC111023451 [Momordica charantia]	[more]
XP_022157799.1	2.2e-87	52.19	uncharacterized protein LOC111024419 [Momordica charantia]	[more]
XP_022149378.1	1.6e-85	40.94	uncharacterized protein LOC111017809 [Momordica charantia]	[more]

BLAST of Moc07g01750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5RBK0	1.6e-08	33.04	Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 P...	[more]
Q8K259	4.7e-08	33.04	Gypsy retrotransposon integrase-like protein 1 OS=Mus musculus OX=10090 GN=Gin1 ...	[more]
Q4R6I1	6.1e-08	32.14	Gypsy retrotransposon integrase-like protein 1 OS=Macaca fascicularis OX=9541 GN...	[more]
Q9NXP7	8.0e-08	32.14	Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P...	[more]
Q66H30	2.6e-06	30.91	Gypsy retrotransposon integrase-like protein 1 OS=Rattus norvegicus OX=10116 GN=...	[more]

BLAST of Moc07g01750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYS0	7.7e-131	74.33	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024755 PE=4 SV=1	[more]
A0A6J1DWM2	1.7e-98	46.02	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DQP4	3.9e-90	53.44	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023451 PE=4 SV=1	[more]
A0A6J1DXK8	1.1e-87	52.19	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024419 PE=4 SV=1	[more]
A0A6J1CQD7	1.1e-84	83.51	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013362 PE=4 SV=1	[more]

BLAST of Moc07g01750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 358..378
None	No IPR available	GENE3D	1.10.340.70		coord: 201..292 e-value: 4.9E-14 score: 54.3
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 311..419
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 311..419
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 243..293 e-value: 7.9E-10 score: 38.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc07g01750.1	Moc07g01750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity