Moc06g38320 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g38320
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Location	chr6: 29648758 .. 29655213 (+)
RNA-Seq Expression	Moc06g38320
Synteny	Moc06g38320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATTACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGGTGTGCACCAGAGTCATGTTGTGGGTTGGTTCTATTGAACCGCTTTCAGAGACTAAGGGAAAAAATAAAAAATAAAAAATAAAAAATTTTCTTTACCCAAATCATTCTTCTGTTGTGTGCTCTCTGTTTTTTCTCCCCTCCTCTGTGTGTTGTGTGTCCTTTAAATATACCAAAAAAATAACAGTAACATGCGTGAGTCAAGAAAAACCAGAGAAAAAGAGGGAAGGGAAAACGTTCGGTTTTGACGAAGGAAAAACGGGAGGAAAAACAAAATGTTTATTTTTAACCAAAACAGAATCTAAATTTATTTAAAACAAAATTATATAAATAAAATAAAATCTTTTTATTTCTTTTATTTTAATATTAAATCAAATTCTTTAAAACAAAATTTATTCATTTTTAATTTAATTTAAACTTTAGCTTATAACCAATAATAAAGTAATCCTATAGTATTTAATAAAATAAAAATTAAATAATTAAAACTAAAACTAAAATAAAGCCGGACCAAATACGGTGTCTACAGCTTGCCCCCCTTTGTGTATCCTTGTAGAACTAAAAGGGTAGACAAAGGCAAAAGACAAAGTATTTGGGAAGGCGAAAATTTTATTCAGAGATGGACCCAACTGGACACTAGGCGGGATCCCGACATGCAAAGAACCTCGTACTTGATACAAGCCTTAACCTCGATCTTGGATCGGGTTTGATTTAATTGACATGATAAGTGCGATGGACCTGGCTTGACACAGGCTTCGACCTCAATCTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCAATAGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGTTTTAACCGAATGATAAAATGCAACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCGACGGACCTGACTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGAGTTCGATTTAACCGAATGATAAAATGCGACGGACCTGGCTTTAACCACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCAAAGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTCCGATTTGACCGAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTCCGATTTAACCGAATGATAAAATGCAACAGACCTGACTTTAACAACAGGCTTCGACCTCGACTTGGATCGAGTTCGATTTAACCGAATGATAAAATGCGACGGACCTGACTTTAACCACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCAAAGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTCCGATTTGACCGAATGATAAAATGCGACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTCCGATTTAACCGAATGATAAAATGCAACGGACCTGACTTTAACAACAGGCTTCAACGTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATGCGACGGACCTGGCTTTAACACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCAAATGATAAAATGCAAAGGACCTGGCTTTAATAATAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGATAAAATACGATGGACCTGGCTTGAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAAGATAAATGTTTGATCACAAAAATTACCAAGCTTACGAGCTCGGCTCGGACGGAATTATGACCTTAAGGATGAGCTGAAATGTGTTGAGCAGGAGACATGCAAGAGAATGTACTCCGACGCTCAAGTCAAAAAGAATCCGAGCTGTATTTGAGAGAAAATACAACGTTTGCGTACTTGGGATAGAGGCAAATGGTTTCTATATATCGACAAGGTCTCCGATAGGATTCTCGACAAGGTCTCCGACGGCTCTTTAAGGTAAGCGTGAATCACGACATGCTATAGTGGAGTTTGTTGGAATATGAGGCTAAGCGAGACACATCTAGGTGAGTTCAAACAAATAATGGGAACGAGACCAAAGGAGATCTTGGTTGGCTCTGTCATAACGGGCGTTGGCTCGGTAGGCAGTCGAAATACCAAGGAGATAAAACTTGGCTTCACAAATTTAAAGTCATGCATGTTTTTCTCTTACAATAAGAAAATGCCATGTGTGAGGTAGAAAACTGGCTCCAACAGATTAAAATGCAATTTCTAAAAAAAAGCTGAAGGGATTTATTTACTTGAAAGCTCTTTACCTAAGTGCAGGGTTTAGAGATTCTTTTAAACTTGCTAAGTGCATGAGATATGCACTTGACGCATGACGATAAGACTAAAACCACGTGTTCATGCTAATGCGAACTTCCAATGGCAGTATCGAGTACTTATCGTAGCGAAATTCTAACATCCGAGCGAGAGGTTAGACCAATCCAATTCATTCTAACAAACCAACACTACACTACGTAGCTACCTGTGCAGGTGAGAAGTTGATCGGTCCTAGAAACGCCTGTAGCGGCATGAGGAGTCAACGACTGGAATGCCTAAAGATCATAAAGTATGGAATAGGAATGGATGCGGTGGAAATCTGTACTCATATTAAATTGCGTCCCCTTATAAATGAAAGAGCTCCTGCCAGAAATAGCTAATGAAAATTGGGTACCCTGTCGCTAGCAATTGAGTGTGGCTTATCAACTAGCTCTAACTCTAAAGGCCGAGGAAAAGCTAAAAAGATCCGCAGGAGGCTCCACGAGAAGCTGCTGCGTGATCTCTGGTGCAATTATCTTGTGACGGATGGGTGAACCTACAAATGTGTATTACCCCAATGTCATGAATGACAAATAATGTTTTATTTATTACTTCCATTTATTCTTATCACTTGAAAAATGTGTGATATCATATGATTTGCTTTTTATTTAGCTTAACCAATGAATTTGATCTTCAATGTCTGATGCAATAATGTATATGCCTAATGAAAGCTAGAATGCAACATATATGCATGATACTAATGAAATGTGATTATGAATGTCCAATGCATGATACCTAAAATTTCATAATCTAACCATGATATGAAAACAATTTTTTTTTTTTGAAGAATATGCATGTAAGTGAAGTGAATGCATGATTTGTGAAAATATGGTTAAGAGAACAAGAAGTTTTTCCATATTTTGCAAAGATATTATCTTTTTTGTCTACTCTCATCCTTCTTATTAGCAATTATTTAGCAAAGAATCAAATGAGAAAAGGTAATATTGACATTGGAAGAAACACATCAATTGTTAATTTTTTTCCTTTTTTATTTTTTTTTTGAATGAATGCCTTCACTCGATAAGAGATATACAAGGTAACTTATCAACTATATCAGGTTTGGAAGGGAATTCTTTTGTAGAGGTATCACATGTGCCAGTTTAGAGAACTATTAAAAAGTAATCCATAGCATTATACATCTTGCTTGATTAAACTGCTTCATAAACTCAGCCTTGTAGTTGACAAGAATGTTGGATACAAGAAAATAGATCTGGCTTTATGAACAAACGAGGATGGAAATCATGATTTTTCATCAAGCTTAACGATGAGAAAAGTCAGCGAGCTTCCTTTTTAAAGAAAAGGAAACCAAGAGTTCAATGATATTTTGTCAAATCTCTCGAACAGTAAGAGACTAGAATATGTTTTTTTAAAAGCTTTGGAGAGAGATTAGAGCATGATCAAATGAATAGAAGAATAGAAATGATTCAATTTCTTTGGATAGATGACCTTGAGAAAGGGTTGCGTAACTCCCCAAGAGTTCATCTCGTGTATCTTGCCCCTTTAGCTCAAGATCTTTGATAAAAATATTCTTTCTCGCCTTTAGCTTCACTTTATGGTTATGTTGCTGCAACCCACTTTTTGAATGTAAGGCTCTCTTTTAACCTTAGCTCCGAAGTGCAGTTGGTGTAGTCCACTTTTGAATGCAAATGACCTCTTTTTTTCTCAAAGTGAAGAAGATTTTGTGCGAGGAGAAATGTAACAATATCAGTATGAAGATGACCTTTGCCTCAAAGCTTTCTATAATGTAGTTACAAATTTGCCTCGACGTAGCATTGCTCGACTTTGCCCCAGTCTGAAGATTTGCAAAGAAGATTGCTCCAATCATTGAACTAAAGCACTGTCATGGCCTTAGACGAAGTTTTTTTTCTTTTTTCTTTTTTTTTTTCGGCCAGACACAACCCTTTTATAAAAAAGGGGTGCAATCACATATAAAAAGTTGATCATGCGTAGTCACCTTTTGCAACTCTAATTGCTGTTCCAAATTATGTCTTTGCTACTGCTCTAGTAAAAACTGTTCTCAAACGAAACTTATCAAAGGACACTGAGATCTTGAGACTATTGGTCAGGTCGCTAACTTCCCAATTCTCAAAATCATTATCATCGGTCTTGGAATCACTTTTACTCAAAAGAAGAAAGCAGACGAAGGATTAAGATAGAAGAACAATATAAAGTGAAAGAAGGAAGTCAGAGTAGGGAAATTTTGAGCAACTACAAGTACCAATTCATGAAGCAGTCAATCATAAGAGCTCAATGTTATTTTATTACTTTCAAAGTTCTCAGGGGAACACTAGGTGGATAATTTTGGATATTTATCATGCAATTAGATGTGACAGGTTTGGTAAAAGACATTTATGGTAAGTAGGCAAATATTGATATTCCTCACAAAAATTGTATGTGACGGGCTGAGCAAATGATTTTTTTTGCAGCAAATGGTCAACTCTCAATGTTGACTATATTTACCATATATCGGTAAGCTAGGCTCAAGGTAGATTAGGCTTAAAGAAGGCTAAGCTCAAGGTTTTACGGGGAGTGAGTAATTTTGGTTCCTCACCTCAATAGGCATGCTTGCCCCAGTATGAAATTTGATGGTTTGCTGGTTAGCACATGAGAAGCAATAGGAAGACCAAGATAAAATTGGTTTGAGTTACAGATTTAGCCCGACAACAAAGTCCGGAAAAATGGTTGAGTTTTGAAAAAGATTATATCTCACTGAGGACCTTGAAGGCATTCGTATTTTCATTTTTTTCCCATTTTTCATTTCTTTTTTCCACTTCTTTTTTGTTTATTTTTCCACTTTTTCCCGTTTCCTCCAAGTGACTTACAATGATTGTTTGATTCTTGCTAAAGTCTCAACTAACAAGAATGATAAGAGTAGACCATATTAAAAATATTATTGAGAAATTTCAAAACATGTAATTTCCTTTTTATCGAGAGTCTTTCAAAGAAAACATATTTTTTTTTTGTTTTTCAACCAATGATATGATATGAGTGATGCATGATTGAATGTATGACTTTGATTTTACTTATTTTTTTTTAAGAAAAATAGCTCAATGTCCACACACTCACATTCTTTTTTACAAGTACTTAGCTAAATCATGGGTGACTAAAGCTTCATTGCCGTTTTAACACTAGCAAGCAATCTCAAAGATGACTTCAAAGCAGAAATAAACTTTATTGAGAATGCAAAGCAATAGGTCAACATTGATTTTGATAATCTTGTACACTCGTGATTCTAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAACCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTTTCAGTTGAATGACCTACAACTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACTACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACTGGAGCTAGTAGATGACTTTGAAATAATTCTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAAAACTTTCTTGCTTTAGTTGCCTCCTACTCTTATGATCGTTAGGTAATGCTGACAATCTTAGATGTGGGTCATTCTGCAGAGCCGATGAGTTTATGGGTACTGTAGACGGATTGTATACCGCAGATCCTTGTTGGTACCTCCACTTGCGCTTCGAGATTACTGTCTGGACTTTATTTTTCCTTTTGATGAAGCTTTTATTTTGTGGCTCTTTATCAATTAAAGGCACTGTCAGTTGTTCGTTTGCCTCTCTCCATCTCCGTGCAGTTTCTTCAGCATTTTCATTGGTAGCATTTTCTTTTGCTTTACCTTTTAACTTCTCTGAGTATGTGGCCTTTGATGTTTGTCCATCTTGGAATGTGAATTCAACCTGA

mRNA sequence

ATGGATTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATTACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAACCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTTTCAGTTGAATGACCTACAACTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACTACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACTGGAGCTAGTAGATGACTTTGAAATAATTCTGATAACAGCTCGAGCCGATGAGTTTATGGGTACTGTAGACGGATTGTATACCGCAGATCCTTGTTGGTACCTCCACTTGCGCTTCGAGATTACTGTCTGGACTTTATTTTTCCTTTTGATGAAGCTTTTATTTTGTGGCTCTTTATCAATTAAAGGCACTGTCAGTTGTTCGTTTGCCTCTCTCCATCTCCGTGCAGTTTCTTCAGCATTTTCATTGGTAGCATTTTCTTTTGCTTTACCTTTTAACTTCTCTGAGTATGTGGCCTTTGATGTTTGTCCATCTTGGAATGTGAATTCAACCTGA

Coding sequence (CDS)

ATGGATTCGTTCGTCGTGTTAGAGTGGGTCGCTGGACTCTTGGTCGTCGTCAGTCAATTACCGGAGGATGGTCTCAAGGCAGCAATGGAGGTCGTGAGTGCTTCATGTGTTGACCATCTTCCTTTGAAAACTTTAACCATCCTGCCTTCATTAGAACTTGCACTTTATGCTTTAGTGAAGTACAGTTTTCAGTTGAATGACCTACAACTCCTGCATGGTAATCACAGTGGACTTGCGGGTCGTACTACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACTGGAGCTAGTAGATGACTTTGAAATAATTCTGATAACAGCTCGAGCCGATGAGTTTATGGGTACTGTAGACGGATTGTATACCGCAGATCCTTGTTGGTACCTCCACTTGCGCTTCGAGATTACTGTCTGGACTTTATTTTTCCTTTTGATGAAGCTTTTATTTTGTGGCTCTTTATCAATTAAAGGCACTGTCAGTTGTTCGTTTGCCTCTCTCCATCTCCGTGCAGTTTCTTCAGCATTTTCATTGGTAGCATTTTCTTTTGCTTTACCTTTTAACTTCTCTGAGTATGTGGCCTTTGATGTTTGTCCATCTTGGAATGTGAATTCAACCTGA

Protein sequence

MDSFVVLEWVAGLLVVVSQLPEDGLKAAMEVVSASCVDHLPLKTLTILPSLELALYALVKYSFQLNDLQLLHGNHSGLAGRTTLDKVAAMVLQVLELVDDFEIILITARADEFMGTVDGLYTADPCWYLHLRFEITVWTLFFLLMKLLFCGSLSIKGTVSCSFASLHLRAVSSAFSLVAFSFALPFNFSEYVAFDVCPSWNVNST

Homology

[Close]

BLAST of Moc06g38320 vs. NCBI nr
Match: XP_022151686.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 2.6e-21
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 33  SASCVDHLPLKTLTILPSLELALYALVKYSFQLNDLQLLHGNHSGLAGRTTLDKVAAMVL 92
           SASC+ HLPLKTL ILPSLELA+YALVKYS QLNDLQLL GNHSGLAGRTT DKV A+ L
Sbjct: 19  SASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIAL 78

Query: 93  QVLELVDDFEIILITAR 110
           +V EL+D  EII IT +
Sbjct: 79  RVRELIDYLEIIGITTQ 95

[Close]

BLAST of Moc06g38320 vs. NCBI nr
Match: XP_022144020.1 ((-)-germacrene D synthase-like [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 33 SASCVDHLPLKTLTILPSLELALYALVKYSFQLNDLQLLHGNHS 77
          SAS VDHLPLKTL I+PSLELALYALVKYS QLNDLQLLHGNHS
Sbjct: 19 SASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHS 62

[Close]

BLAST of Moc06g38320 vs. ExPASy TrEMBL
Match: A0A6J1DFF2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX=3673 GN=LOC111019602 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 33  SASCVDHLPLKTLTILPSLELALYALVKYSFQLNDLQLLHGNHSGLAGRTTLDKVAAMVL 92
           SASC+ HLPLKTL ILPSLELA+YALVKYS QLNDLQLL GNHSGLAGRTT DKV A+ L
Sbjct: 19  SASCIHHLPLKTLAILPSLELAIYALVKYSSQLNDLQLLRGNHSGLAGRTTFDKVVAIAL 78

Query: 93  QVLELVDDFEIILITAR 110
           +V EL+D  EII IT +
Sbjct: 79  RVRELIDYLEIIGITTQ 95

[Close]

BLAST of Moc06g38320 vs. ExPASy TrEMBL
Match: A0A6J1CQG9 ((-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 33 SASCVDHLPLKTLTILPSLELALYALVKYSFQLNDLQLLHGNHS 77
          SAS VDHLPLKTL I+PSLELALYALVKYS QLNDLQLLHGNHS
Sbjct: 19 SASGVDHLPLKTLAIMPSLELALYALVKYSSQLNDLQLLHGNHS 62

The following BLAST results are available for this feature:

BLAST of Moc06g38320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151686.1	2.6e-21	76.62	U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]	[more]
XP_022144020.1	5.5e-11	90.91	(-)-germacrene D synthase-like [Momordica charantia]	[more]

BLAST of Moc06g38320 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g38320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFF2	1.3e-21	76.62	U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Momordica charantia OX...	[more]
A0A6J1CQG9	2.6e-11	90.91	(-)-germacrene D synthase-like OS=Momordica charantia OX=3673 GN=LOC111013811 PE...	[more]

BLAST of Moc06g38320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g38320.1	Moc06g38320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016102	diterpenoid biosynthetic process
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0010333	terpene synthase activity