Moc06g19390 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g19390
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionMuDRA-like transposase
Locationchr6: 15234787 .. 15236614 (-)
RNA-Seq ExpressionMoc06g19390
SyntenyMoc06g19390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTCGGGCGAGAATCATATTGTATTCGGGGCATGAATTCTCGCCCGAAAAACAATAACTTCCGCCCGAGAATTTCGAAAATTTCTAATTTTGAATTTTGAATGCTTTTCTTTTCACATGCAGGATGCCTCGCCTATTTGTTAGCTATGGTGGTAGTTGGAATGAAACACAATTTATATATGAAGGTGGAATTATGGGAGGTTTGGATGTGGACGACTGTATAACTTATGAGGAGCTCCTTAGTGCTATGTTTAGCCTTACCCGAATAGATCCGGACTGGTACAAAATCTTGATACATTGTGTATATAAGTTCAATCTGCAATACCAGGTTTCGAAGTATTACATCTTTGATGACCATAGCTTTAGATTTTTTTTAAGAGGCCCTCCACATCCCTCTGAAGTCCCATTATATGTATCTGTCGTACCGAAGGAAATACAAGTCTGTGGAAGTAGTTCAATGAATCGTAACATTCCAGAAGCAGAAGCATTCCAATCATTTCCCCACTAGTTAAGGCAGATCGTTCCGTATTATGCGCCATCGCTTCCTTTTGATTCCACGCTCCCGAGCACATCATGTTTTGTCCCATCAATGACGCCGCTAACGGACAATGTAATCCCATGTAACATGGGTGACGAAACAAACTATTGCGGTCAAGGGGTCGATAACGATGAAAACGACGTGGAGTAGGAGTTCGAGGCCTAGGATGATGACAATCACAATTCTGAATTCGATGATGATGTTGATTTTGACAACGAGGAGGAAGTAGACCCAGTGGATGTAGCCGGTCCATCAACGGACTCCTCGACCGAAGTGCATATGGTCAATATGAATGTACCGTGTGCAACCGATCAAGCTTCTTGCTCAATGGAAATTATTAGGACAGGTGACGAAGTTTGTTCGTCAATGGAGGACATTGCGGTAGGGAGTACTTTTCAATCGAAAAAATATTTGCAGTTCAAACTCTCGGTGTACGCAATGAAGATTAATTTTGAATATCGCGTAAAGAAGTCAACAAAAAGTTTGTACACTGTCTGATGCACCAAGGATGGGTGCAAATGGAGCCTACGTTCAAGGAAAATTAAATGTTCGGATACTTTTCTTATCTCTACATTCTATGAGGTGCACAGTTGCACTCGTGAGGTAATGAAACATTACCACCGGCAAGCTCAAAGTCGTGTGGTGGGTCAGATTATAAAGTCCACATTTGAGAATCAAGTCGTCGTTATAGACCGAAGGATATTGTTAACGACATACGGAAAAATTACGGTATTAACATCCCATATGAAAAGGCGTGGCGTGCGAGAGAGAGGGCTTTGGAACTACTAATGGGATCGCCGAAGAAGTTGTACACTCTTTTGCGTAAATATGGTGAGGCATTGAAATTGGTGAACCTGGGCACGGTATTTTCATTGAAATTGGAGAACGATAAATATTTTCAATATGCATTCATGGCCCTAGGCTGCTCAATCCGAGGGTTTAGAAGTTGCATTCGCGCCGTACTTGTTATCGACGGTGCACATCTGAAGGGAAAATATAAAGGTGTAATATTAATAGCCTCCTCTATTATTGGTAATAATCAGATATATCCACTTGCATTTGGAATCGTAGACAAGGAAACAAACGACTCAAGGACTTGGTTCTTGGAACGAGTGAAGAGTTGTATTGGAGACGTTGAAGGATTGGTGTTCGTGTCTGACCGGCATCGAATCATTAATAACTATGTAACTTCTGTCTTCCACACTGCTGAAAACGTTAGTTGCATGCATCACGTGCAGATGAACTTGAATGATAAGTTCAAGATTAGGAGTGAAGACGTGGAATGA

mRNA sequence

ATGAGGATGCCTCGCCTATTTGTTAGCTATGGTGGTAGTTGGAATGAAACACAATTTATATATGAAGGTGGAATTATGGGAGGTTTGGATGTGGACGACTGTATAACTTATGAGGAGCTCCTTAGTGCTATGTTTAGCCTTACCCGAATAGATCCGGACTGGTACAAAATCTTGATACATTGTGTATATAAGTTCAATCTGCAATACCAGGATGATGACAATCACAATTCTGAATTCGATGATGATGTTGATTTTGACAACGAGGAGGAAGTAGACCCAGTGGATGTAGCCGGTCCATCAACGGACTCCTCGACCGAAGTGCATATGGTCAATATGAATGTACCGTGTGCAACCGATCAAGCTTCTTGCTCAATGGAAATTATTAGGACAGGTGACGAAGTTTGTTCGTCAATGGAGGACATTGCGGCGTGGCGTGCGAGAGAGAGGGCTTTGGAACTACTAATGGGATCGCCGAAGAAGTTGTACACTCTTTTGCGTAAATATGGTGAGGCATTGAAATTGGTGAACCTGGGCACGATGAACTTGAATGATAAGTTCAAGATTAGGAGTGAAGACGTGGAATGA

Coding sequence (CDS)

ATGAGGATGCCTCGCCTATTTGTTAGCTATGGTGGTAGTTGGAATGAAACACAATTTATATATGAAGGTGGAATTATGGGAGGTTTGGATGTGGACGACTGTATAACTTATGAGGAGCTCCTTAGTGCTATGTTTAGCCTTACCCGAATAGATCCGGACTGGTACAAAATCTTGATACATTGTGTATATAAGTTCAATCTGCAATACCAGGATGATGACAATCACAATTCTGAATTCGATGATGATGTTGATTTTGACAACGAGGAGGAAGTAGACCCAGTGGATGTAGCCGGTCCATCAACGGACTCCTCGACCGAAGTGCATATGGTCAATATGAATGTACCGTGTGCAACCGATCAAGCTTCTTGCTCAATGGAAATTATTAGGACAGGTGACGAAGTTTGTTCGTCAATGGAGGACATTGCGGCGTGGCGTGCGAGAGAGAGGGCTTTGGAACTACTAATGGGATCGCCGAAGAAGTTGTACACTCTTTTGCGTAAATATGGTGAGGCATTGAAATTGGTGAACCTGGGCACGATGAACTTGAATGATAAGTTCAAGATTAGGAGTGAAGACGTGGAATGA

Protein sequence

MRMPRLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCVYKFNLQYQDDDNHNSEFDDDVDFDNEEEVDPVDVAGPSTDSSTEVHMVNMNVPCATDQASCSMEIIRTGDEVCSSMEDIAAWRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTMNLNDKFKIRSEDVE
Homology
BLAST of Moc06g19390 vs. NCBI nr
Match: XP_022156834.1 (uncharacterized protein LOC111023667 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-16
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 3  MPRLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCV 62
          M RLFV YGG WNE   +YEGG+MGGLDVD+ ITY  L+SA+  LTRIDPD + +++ CV
Sbjct: 21 MRRLFVIYGGKWNEAGTMYEGGVMGGLDVDETITYANLVSALHMLTRIDPDQFDLIVQCV 80

Query: 63 YKFNLQYQ 71
          Y+F+ +Y+
Sbjct: 81 YRFDFRYE 88

BLAST of Moc06g19390 vs. NCBI nr
Match: XP_022156834.1 (uncharacterized protein LOC111023667 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 2.3e-03
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0

Query: 143 AWRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTM 181
           AW A+  AL LL+GSPK  YTLL KYGEALK+VN GT+
Sbjct: 390 AWMAKNVALNLLIGSPKHSYTLLCKYGEALKVVNAGTV 427


HSP 2 Score: 84.0 bits (206), Expect = 1.6e-12
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 7  FVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCVYKFN 66
          F    G WNE   +YEGG+MGGL+VD+ ITY +L+SA+F +TRI+PD + I++ C+YKF 
Sbjct: 12 FCKLWGQWNEAGTVYEGGVMGGLNVDEGITYRDLVSAIFRMTRINPDIFNIVLQCIYKFE 71

Query: 67 LQY 70
           QY
Sbjct: 72 FQY 74

BLAST of Moc06g19390 vs. NCBI nr
Match: XP_022154803.1 (uncharacterized protein LOC111021969 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 144 WRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTMNLNDKFKIRSED 193
           WRARE AL LLMGSPK+ YT L KYG ALK  N+GT+     F+I+ ED
Sbjct: 404 WRAREVALSLLMGSPKESYTTLHKYGAALKAANVGTV-----FQIKLED 447


HSP 2 Score: 79.3 bits (194), Expect = 4.0e-11
Identity = 91/351 (25.93%), Postives = 115/351 (32.76%), Query Frame = 0

Query: 3   MPRLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCV 62
           M RLFV YGG WNE   +YEGG MGGLDVD+ ITY  L+SA+  LTRID D + +++ CV
Sbjct: 1   MRRLFVIYGGKWNEAGTVYEGGXMGGLDVDETITYANLVSALHMLTRIDLDQFDLIVQCV 60

Query: 63  YKF--------------NLQYQDDDNHNSEF-----------DDDVDFDNEEEVDPV-DV 122
           Y                NL   ++D+ N +            DD+ D+D     D V D 
Sbjct: 61  YDLIFEITPLADNVISCNLDDDENDDGNGQLYENEVEYEFQSDDEYDYDEYRTEDGVEDD 120

Query: 123 AGPSTDSST----------------------EVHMVNMNVPCAT---------------- 181
            G   D+                        E H V+ N P  T                
Sbjct: 121 GGNGYDNGEEDEYHTEDVLDEHYENEGQHVHESHTVSGNAPYQTVEEVVXRPMQNIITGN 180

BLAST of Moc06g19390 vs. NCBI nr
Match: KAA0065944.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 2.6e-10
Identity = 59/213 (27.70%), Postives = 96/213 (45.07%), Query Frame = 0

Query: 5   RLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCVYK 64
           R+ V +GG+W+E +  YEGG++ G+ V   IT+++L S ++ L  +DP  + I I C+Y+
Sbjct: 5   RILVRHGGAWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYE 64

Query: 65  FN-------------------------------LQYQDDDNH-----NSEFDDDVDFDNE 124
                                            L ++   N      N +++     +  
Sbjct: 65  IKGEKEAPPFELSNDRDLKFYILSENPLEVPLYLSFEPTSNRSMKVLNKDYNSVSGSNQV 124

Query: 125 EEVDPVDVAGPSTDSSTEVHMVNMNVPCATDQASCSMEIIRTGDEVCSSMEDIAAWRARE 182
           + ++P    G  T    EV +  +  P    +    +E +R    +    E   AWRARE
Sbjct: 125 QNLNPHPPIGMDTLDENEVDIGEVQGPGRIYKPRDIIEDMRQDYGINMIYE--KAWRARE 184

BLAST of Moc06g19390 vs. NCBI nr
Match: XP_022158318.1 (protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 143 AWRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTMNLNDKFKIRSED 193
           AWRARERALELLMGSPKK YTLLRKYGEALK VN GT+     F ++ ED
Sbjct: 50  AWRARERALELLMGSPKKSYTLLRKYGEALKSVNPGTV-----FSLKLED 94

BLAST of Moc06g19390 vs. ExPASy TrEMBL
Match: A0A6J1DUS4 (uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023667 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 40/68 (58.82%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 3  MPRLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCV 62
          M RLFV YGG WNE   +YEGG+MGGLDVD+ ITY  L+SA+  LTRIDPD + +++ CV
Sbjct: 21 MRRLFVIYGGKWNEAGTMYEGGVMGGLDVDETITYANLVSALHMLTRIDPDQFDLIVQCV 80

Query: 63 YKFNLQYQ 71
          Y+F+ +Y+
Sbjct: 81 YRFDFRYE 88

BLAST of Moc06g19390 vs. ExPASy TrEMBL
Match: A0A6J1DUS4 (uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023667 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-03
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0

Query: 143 AWRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTM 181
           AW A+  AL LL+GSPK  YTLL KYGEALK+VN GT+
Sbjct: 390 AWMAKNVALNLLIGSPKHSYTLLCKYGEALKVVNAGTV 427


HSP 2 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 7  FVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCVYKFN 66
          F    G WNE   +YEGG+MGGL+VD+ ITY +L+SA+F +TRI+PD + I++ C+YKF 
Sbjct: 12 FCKLWGQWNEAGTVYEGGVMGGLNVDEGITYRDLVSAIFRMTRINPDIFNIVLQCIYKFE 71

Query: 67 LQY 70
           QY
Sbjct: 72 FQY 74

BLAST of Moc06g19390 vs. ExPASy TrEMBL
Match: A0A6J1DLB0 (uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021969 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.0e-05
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 144 WRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTMNLNDKFKIRSED 193
           WRARE AL LLMGSPK+ YT L KYG ALK  N+GT+     F+I+ ED
Sbjct: 404 WRAREVALSLLMGSPKESYTTLHKYGAALKAANVGTV-----FQIKLED 447


HSP 2 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 91/351 (25.93%), Postives = 115/351 (32.76%), Query Frame = 0

Query: 3   MPRLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCV 62
           M RLFV YGG WNE   +YEGG MGGLDVD+ ITY  L+SA+  LTRID D + +++ CV
Sbjct: 1   MRRLFVIYGGKWNEAGTVYEGGXMGGLDVDETITYANLVSALHMLTRIDLDQFDLIVQCV 60

Query: 63  YKF--------------NLQYQDDDNHNSEF-----------DDDVDFDNEEEVDPV-DV 122
           Y                NL   ++D+ N +            DD+ D+D     D V D 
Sbjct: 61  YDLIFEITPLADNVISCNLDDDENDDGNGQLYENEVEYEFQSDDEYDYDEYRTEDGVEDD 120

Query: 123 AGPSTDSST----------------------EVHMVNMNVPCAT---------------- 181
            G   D+                        E H V+ N P  T                
Sbjct: 121 GGNGYDNGEEDEYHTEDVLDEHYENEGQHVHESHTVSGNAPYQTVEEVVXRPMQNIITGN 180

BLAST of Moc06g19390 vs. ExPASy TrEMBL
Match: A0A5A7VF66 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00120 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 59/213 (27.70%), Postives = 96/213 (45.07%), Query Frame = 0

Query: 5   RLFVSYGGSWNETQFIYEGGIMGGLDVDDCITYEELLSAMFSLTRIDPDWYKILIHCVYK 64
           R+ V +GG+W+E +  YEGG++ G+ V   IT+++L S ++ L  +DP  + I I C+Y+
Sbjct: 5   RILVRHGGAWDEGRRKYEGGVLKGIVVPKEITHKDLQSELYDLAEVDPTKFDIKIRCIYE 64

Query: 65  FN-------------------------------LQYQDDDNH-----NSEFDDDVDFDNE 124
                                            L ++   N      N +++     +  
Sbjct: 65  IKGEKEAPPFELSNDRDLKFYILSENPLEVPLYLSFEPTSNRSMKVLNKDYNSVSGSNQV 124

Query: 125 EEVDPVDVAGPSTDSSTEVHMVNMNVPCATDQASCSMEIIRTGDEVCSSMEDIAAWRARE 182
           + ++P    G  T    EV +  +  P    +    +E +R    +    E   AWRARE
Sbjct: 125 QNLNPHPPIGMDTLDENEVDIGEVQGPGRIYKPRDIIEDMRQDYGINMIYE--KAWRARE 184

BLAST of Moc06g19390 vs. ExPASy TrEMBL
Match: A0A6J1DVR6 (protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC111024830 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.9e-09
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 143 AWRARERALELLMGSPKKLYTLLRKYGEALKLVNLGTMNLNDKFKIRSED 193
           AWRARERALELLMGSPKK YTLLRKYGEALK VN GT+     F ++ ED
Sbjct: 50  AWRARERALELLMGSPKKSYTLLRKYGEALKSVNPGTV-----FSLKLED 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156834.13.1e-1658.82uncharacterized protein LOC111023667 [Momordica charantia][more]
XP_022156834.12.3e-0368.42uncharacterized protein LOC111023667 [Momordica charantia][more]
XP_022154803.11.2e-0461.22uncharacterized protein LOC111021969 [Momordica charantia][more]
KAA0065944.12.6e-1027.70MuDRA-like transposase [Cucumis melo var. makuwa][more]
XP_022158318.11.8e-0874.00protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DUS41.5e-1658.82uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DUS41.1e-0368.42uncharacterized protein LOC111023667 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DLB06.0e-0561.22uncharacterized protein LOC111021969 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A5A7VF661.2e-1027.70MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold6... [more]
A0A6J1DVR68.9e-0974.00protein FAR-RED ELONGATED HYPOCOTYL 3-like OS=Momordica charantia OX=3673 GN=LOC... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g19390.1Moc06g19390.1mRNA