Moc06g17580 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g17580
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr6: 13780817 .. 13781329 (-)
RNA-Seq ExpressionMoc06g17580
SyntenyMoc06g17580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCGTACGATGGGTCTGGCGATCCGGTGTCGTACGTCGAGGTGTTCGAAGCGAAAATGGATTTTTTGGCCGCAAGCGATGGTATGAAGTGCCGAGCATTTCAAATAGCGTTGGAGGGCTCGGCAAGATTGTGGTATCGGCAGCTGAAGCCGAAGTCAATTGACAGTTATCAACAGTTACAGAGGTTGTGCATCAACCAGTTCTCGGCCAGGGATTTGCTGAAGCTGCCGCCATCCCACCTCGGAACGGTGAAGCAACGCGAGTATGAGTCCCTTACAAAATACATCTCCCGGTTCATGGACGAGCATGTCAAGGTGGTGAGTTGCACCGATTACATCGCCATGATGTATTTTACAATAGGGTTCAATGACCAGAACTTGACGATCGATTTCGGGAGTCGCCCTCTGGCCTCCTTGAACGAGATGCTCGCCAGAGCTCGTCAGTATATTGATAGGTTAGGACTGTGGAAGGCCAACAGAGCCAGGCGCAGTAGCCACAACAAAGAATAA

mRNA sequence

ATGAGCTCGTACGATGGGTCTGGCGATCCGGTGTCGTACGTCGAGGTGTTCGAAGCGAAAATGGATTTTTTGGCCGCAAGCGATGGTATGAAGTGCCGAGCATTTCAAATAGCGTTGGAGGGCTCGGCAAGATTGTGGTATCGGCAGCTGAAGCCGAAGTCAATTGACAGTTATCAACAGTTACAGAGGTTGTGCATCAACCAGTTCTCGGCCAGGGATTTGCTGAAGCTGCCGCCATCCCACCTCGGAACGGTGAAGCAACGCGAGTATGAGTCCCTTACAAAATACATCTCCCGGTTCATGGACGAGCATGTCAAGGTGGTGAGTTGCACCGATTACATCGCCATGATGTATTTTACAATAGGGTTCAATGACCAGAACTTGACGATCGATTTCGGGAGTCGCCCTCTGGCCTCCTTGAACGAGATGCTCGCCAGAGCTCGTCAGTATATTGATAGGTTAGGACTGTGGAAGGCCAACAGAGCCAGGCGCAGTAGCCACAACAAAGAATAA

Coding sequence (CDS)

ATGAGCTCGTACGATGGGTCTGGCGATCCGGTGTCGTACGTCGAGGTGTTCGAAGCGAAAATGGATTTTTTGGCCGCAAGCGATGGTATGAAGTGCCGAGCATTTCAAATAGCGTTGGAGGGCTCGGCAAGATTGTGGTATCGGCAGCTGAAGCCGAAGTCAATTGACAGTTATCAACAGTTACAGAGGTTGTGCATCAACCAGTTCTCGGCCAGGGATTTGCTGAAGCTGCCGCCATCCCACCTCGGAACGGTGAAGCAACGCGAGTATGAGTCCCTTACAAAATACATCTCCCGGTTCATGGACGAGCATGTCAAGGTGGTGAGTTGCACCGATTACATCGCCATGATGTATTTTACAATAGGGTTCAATGACCAGAACTTGACGATCGATTTCGGGAGTCGCCCTCTGGCCTCCTTGAACGAGATGCTCGCCAGAGCTCGTCAGTATATTGATAGGTTAGGACTGTGGAAGGCCAACAGAGCCAGGCGCAGTAGCCACAACAAAGAATAA

Protein sequence

MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQLQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFTIGFNDQNLTIDFGSRPLASLNEMLARARQYIDRLGLWKANRARRSSHNKE
Homology
BLAST of Moc06g17580 vs. NCBI nr
Match: XP_022152851.1 (uncharacterized protein LOC111020475 [Momordica charantia])

HSP 1 Score: 250.8 bits (639), Expect = 8.7e-63
Identity = 127/162 (78.40%), Postives = 135/162 (83.33%), Query Frame = 0

Query: 1   MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQ 60
           MSSYDGSGDP+SYVEVFE KMDFLA SD MKC AFQI LEGS RLWYRQLK +SIDSYQQ
Sbjct: 1   MSSYDGSGDPISYVEVFEGKMDFLAVSDAMKCGAFQITLEGSTRLWYRQLKLRSIDSYQQ 60

Query: 61  LQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFT 120
           L+RL INQFS R  LKLP SHLGTVKQR+ ES T YI+RFMDEHVKVVSCTD IAMMYFT
Sbjct: 61  LRRLFINQFSTRQFLKLPLSHLGTVKQRDNESFTVYIARFMDEHVKVVSCTDDIAMMYFT 120

Query: 121 IGFNDQNLTIDFGSRPLASLNEMLARARQYIDRLGLWKANRA 163
            G ND+NLTI+FGS   A LNEM ARARQYID L LW A+ A
Sbjct: 121 TGLNDRNLTIEFGSYQPAYLNEMFARARQYIDGLELWNADGA 162

BLAST of Moc06g17580 vs. NCBI nr
Match: XP_022149029.1 (uncharacterized protein LOC111017548 [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-60
Identity = 122/150 (81.33%), Postives = 133/150 (88.67%), Query Frame = 0

Query: 21  MDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQLQRLCINQFSARDLLKLPPS 80
           MDFLAASD +KCRAFQIALEGS RLWY+QLKP+SIDSYQQL+RL INQFSAR LLKLPPS
Sbjct: 1   MDFLAASDAIKCRAFQIALEGSVRLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPS 60

Query: 81  HLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFTIGFNDQNLTIDFGSRPLASL 140
           HL TVKQR+ ESLT+YI+R MDEHVKVVSCTD IAMMYFT G ND+NLTI+FGSRP ASL
Sbjct: 61  HLETVKQRDNESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASL 120

Query: 141 NEMLARARQYIDRLGLWKANRARRSSHNKE 171
           N+MLARARQYID L LWKA  ARRSS  K+
Sbjct: 121 NKMLARARQYIDGLELWKAKGARRSSRGKD 150

BLAST of Moc06g17580 vs. NCBI nr
Match: XP_022159250.1 (uncharacterized protein LOC111025663 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-35
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 0

Query: 1   MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQ 60
           M  YDGS DP  YVEVFE  MDF AA+D +KCRAFQIAL  SARLWYR+L  +SI +Y Q
Sbjct: 51  MKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQ 110

Query: 61  LQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFT 120
           L++  I+QFS+R   +   +HL T++Q+E E+L +Y++RF++E +KV  C+D  AM YF 
Sbjct: 111 LRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLEEQLKVAHCSDDSAMCYFL 170

Query: 121 IGFNDQNLTIDFGSRPLASLNEMLARARQYID 153
            G  D+NLT+  G    A+  E+L +A++ ID
Sbjct: 171 TGLADENLTVKLGEEAPATFAEVLQKAKKVID 202

BLAST of Moc06g17580 vs. NCBI nr
Match: XP_022156542.1 (uncharacterized protein LOC111023421 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-34
Identity = 79/160 (49.38%), Postives = 106/160 (66.25%), Query Frame = 0

Query: 4   YDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQLQR 63
           YDG+ DP  YVEVFE  MDF AASD +KCRAFQIAL GSARLWYR+L  +SI +Y QL+R
Sbjct: 89  YDGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQLRR 148

Query: 64  LCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFTIGF 123
             + QFS+R   K   +HL T++Q+E E+L +Y++RF +E +KV  C+D  AM YF  G 
Sbjct: 149 EFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFLTGL 208

Query: 124 NDQNLTIDFGSRPLASLNEMLARARQYIDRLGLWKANRAR 164
            D+ LT+  G    A+  E+L +A++ ID   L +    R
Sbjct: 209 ADEALTVKLGEEAPATFAEVLQKAKKVIDGQELLRTKTGR 248

BLAST of Moc06g17580 vs. NCBI nr
Match: XP_022156088.1 (uncharacterized protein LOC111023060 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 2.9e-34
Identity = 76/152 (50.00%), Postives = 105/152 (69.08%), Query Frame = 0

Query: 1   MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQ 60
           M SYDGS DP  YVEVFE  MDF AA+D +KCRAFQIAL GSARLWYR+L  +SI +Y Q
Sbjct: 157 MKSYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQ 216

Query: 61  LQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFT 120
           L++  I+QF +R   +   +HL T++Q+E ++L +YI+RF +E +KVV C+D  +M YF 
Sbjct: 217 LRKEFISQFFSRHYDRKTTTHLATIRQKEGKTLKEYITRFQEEQLKVVHCSDDSSMCYFL 276

Query: 121 IGFNDQNLTIDFGSRPLASLNEMLARARQYID 153
            G  D+  T+  G   LA+  E+L   +++ID
Sbjct: 277 TGLADETPTVKLGEEALATFAEVLQMEKKFID 308

BLAST of Moc06g17580 vs. ExPASy TrEMBL
Match: A0A6J1DIZ8 (uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020475 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63
Identity = 127/162 (78.40%), Postives = 135/162 (83.33%), Query Frame = 0

Query: 1   MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQ 60
           MSSYDGSGDP+SYVEVFE KMDFLA SD MKC AFQI LEGS RLWYRQLK +SIDSYQQ
Sbjct: 1   MSSYDGSGDPISYVEVFEGKMDFLAVSDAMKCGAFQITLEGSTRLWYRQLKLRSIDSYQQ 60

Query: 61  LQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFT 120
           L+RL INQFS R  LKLP SHLGTVKQR+ ES T YI+RFMDEHVKVVSCTD IAMMYFT
Sbjct: 61  LRRLFINQFSTRQFLKLPLSHLGTVKQRDNESFTVYIARFMDEHVKVVSCTDDIAMMYFT 120

Query: 121 IGFNDQNLTIDFGSRPLASLNEMLARARQYIDRLGLWKANRA 163
            G ND+NLTI+FGS   A LNEM ARARQYID L LW A+ A
Sbjct: 121 TGLNDRNLTIEFGSYQPAYLNEMFARARQYIDGLELWNADGA 162

BLAST of Moc06g17580 vs. ExPASy TrEMBL
Match: A0A6J1D5T3 (uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017548 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 122/150 (81.33%), Postives = 133/150 (88.67%), Query Frame = 0

Query: 21  MDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQLQRLCINQFSARDLLKLPPS 80
           MDFLAASD +KCRAFQIALEGS RLWY+QLKP+SIDSYQQL+RL INQFSAR LLKLPPS
Sbjct: 1   MDFLAASDAIKCRAFQIALEGSVRLWYQQLKPRSIDSYQQLRRLFINQFSARQLLKLPPS 60

Query: 81  HLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFTIGFNDQNLTIDFGSRPLASL 140
           HL TVKQR+ ESLT+YI+R MDEHVKVVSCTD IAMMYFT G ND+NLTI+FGSRP ASL
Sbjct: 61  HLETVKQRDNESLTEYIARLMDEHVKVVSCTDDIAMMYFTTGLNDRNLTIEFGSRPPASL 120

Query: 141 NEMLARARQYIDRLGLWKANRARRSSHNKE 171
           N+MLARARQYID L LWKA  ARRSS  K+
Sbjct: 121 NKMLARARQYIDGLELWKAKGARRSSRGKD 150

BLAST of Moc06g17580 vs. ExPASy TrEMBL
Match: A0A6J1DY58 (uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025663 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 77/152 (50.66%), Postives = 106/152 (69.74%), Query Frame = 0

Query: 1   MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQ 60
           M  YDGS DP  YVEVFE  MDF AA+D +KCRAFQIAL  SARLWYR+L  +SI +Y Q
Sbjct: 51  MKPYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTDSARLWYRRLPARSISTYSQ 110

Query: 61  LQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFT 120
           L++  I+QFS+R   +   +HL T++Q+E E+L +Y++RF++E +KV  C+D  AM YF 
Sbjct: 111 LRKEFISQFSSRHYDRKTATHLATIRQKEGETLREYVTRFLEEQLKVAHCSDDSAMCYFL 170

Query: 121 IGFNDQNLTIDFGSRPLASLNEMLARARQYID 153
            G  D+NLT+  G    A+  E+L +A++ ID
Sbjct: 171 TGLADENLTVKLGEEAPATFAEVLQKAKKVID 202

BLAST of Moc06g17580 vs. ExPASy TrEMBL
Match: A0A6J1DS95 (uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023421 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 8.3e-35
Identity = 79/160 (49.38%), Postives = 106/160 (66.25%), Query Frame = 0

Query: 4   YDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQLQR 63
           YDG+ DP  YVEVFE  MDF AASD +KCRAFQIAL GSARLWYR+L  +SI +Y QL+R
Sbjct: 89  YDGTKDPKDYVEVFEGLMDFQAASDAIKCRAFQIALTGSARLWYRRLPXRSISTYSQLRR 148

Query: 64  LCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFTIGF 123
             + QFS+R   K   +HL T++Q+E E+L +Y++RF +E +KV  C+D  AM YF  G 
Sbjct: 149 EFLAQFSSRHYDKKTATHLATIRQKEGETLREYVTRFQEEQLKVAHCSDDSAMCYFLTGL 208

Query: 124 NDQNLTIDFGSRPLASLNEMLARARQYIDRLGLWKANRAR 164
            D+ LT+  G    A+  E+L +A++ ID   L +    R
Sbjct: 209 ADEALTVKLGEEAPATFAEVLQKAKKVIDGQELLRTKTGR 248

BLAST of Moc06g17580 vs. ExPASy TrEMBL
Match: A0A6J1DPN4 (uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023060 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 76/152 (50.00%), Postives = 105/152 (69.08%), Query Frame = 0

Query: 1   MSSYDGSGDPVSYVEVFEAKMDFLAASDGMKCRAFQIALEGSARLWYRQLKPKSIDSYQQ 60
           M SYDGS DP  YVEVFE  MDF AA+D +KCRAFQIAL GSARLWYR+L  +SI +Y Q
Sbjct: 157 MKSYDGSKDPKDYVEVFEGLMDFQAATDAIKCRAFQIALTGSARLWYRRLPARSISTYSQ 216

Query: 61  LQRLCINQFSARDLLKLPPSHLGTVKQREYESLTKYISRFMDEHVKVVSCTDYIAMMYFT 120
           L++  I+QF +R   +   +HL T++Q+E ++L +YI+RF +E +KVV C+D  +M YF 
Sbjct: 217 LRKEFISQFFSRHYDRKTTTHLATIRQKEGKTLKEYITRFQEEQLKVVHCSDDSSMCYFL 276

Query: 121 IGFNDQNLTIDFGSRPLASLNEMLARARQYID 153
            G  D+  T+  G   LA+  E+L   +++ID
Sbjct: 277 TGLADETPTVKLGEEALATFAEVLQMEKKFID 308

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152851.18.7e-6378.40uncharacterized protein LOC111020475 [Momordica charantia][more]
XP_022149029.13.1e-6081.33uncharacterized protein LOC111017548 [Momordica charantia][more]
XP_022159250.13.4e-3550.66uncharacterized protein LOC111025663 [Momordica charantia][more]
XP_022156542.11.7e-3449.38uncharacterized protein LOC111023421 [Momordica charantia][more]
XP_022156088.12.9e-3450.00uncharacterized protein LOC111023060 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DIZ84.2e-6378.40uncharacterized protein LOC111020475 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1D5T31.5e-6081.33uncharacterized protein LOC111017548 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DY581.7e-3550.66uncharacterized protein LOC111025663 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DS958.3e-3549.38uncharacterized protein LOC111023421 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DPN41.4e-3450.00uncharacterized protein LOC111023060 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 35..105
e-value: 5.9E-8
score: 32.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g17580.1Moc06g17580.1mRNA