Moc06g15010 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g15010
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr6: 11746356 .. 11747849 (-)
RNA-Seq Expression	Moc06g15010
Synteny	Moc06g15010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCACTTTAATGTGGCTCAAGTGAACGACGCTGTCATAGACGAGGGGAATCAGGTCAGCTTTATCTTGGAATCTCTTCTGAAGAGTTTCCTACAGTTTCGCACAAATGCTGTAATGAACAAGATAGAGTACAACCTTACCACGCTCTTAAATGAGCTACAGATTTTTCAATCTCTTATGAAAAATAAGGAACTTGAAGGAAAGGCAAATGTTGTCTCCTCAAAACGGTTTCATCAAGGTTCGACCTCAGGAACCAAATCTGCACTTTCTTCTTCTGAAATAAGACTTTCAAGAAGAAGAAGAACAATGGTAAGGGGGTAAAAGCTGACCCTACTGCTACTGTTGGTACCAAGAAGGGCAAAGCCAGAGTTGCTGACAAAAGAAAATGTTTCCACTGCAACGTGGATGGGCATTGGAAAAGAAACTACCCGAAATACTTTGCCAAAAATGAAGAAAGCCAAAGAAGATAAATATGATTTACTTGTTCTTGAAACTTGCTTAGTGGAGAATGATGATTCTGCCTGGATATTAGATTTAGGGGTCACTAACCATGTTTGTTCTTATTTTCAGGGAATTAGTTCCCAGAGGCAGCTTGATGCTGGGGAAATGACTCTCAAAGTCGGAATGGGAGATGTCGTCTCAGCCATCGCAATGGGAGACCTAAAGTTGTTTTTAAACAAGAATACATACATATTATTAGATAATGTGTATGTAGTTCCTAAAATAAATAGGAACTTAATTTCAGTTTCTTGTCGACTGGAACAATGTTATGTTATTTTCTTTTCATTAAATGAAGTGTTCATTTCACGACATGGTGTTAACATTTGTTATGCAAAACTCGAAAACAACTTATACGTGTTAAGATCAACCATAACTACATCAATTTTAAATACAAAGTTGTTTAAAAATGCTAAAACTAAACACAAAAGGCAAAAAACTTCTAAAAAAGAAAATACCTATTTACCTTAGATTTGGAAGGTCCAGCATCAGATTGAGTTATGTTATTCATAACGATGGTTGTTAGCCTTGAGATTTTCGAATTCAGATCTACTACTACATCATCATCTGCTAATCCCTTGGATGCCTTTGCTGATTCAACCCTTGATTTCGACCACGATGCTTATTACTTGAGATTCTTTATAGATTGTCAAAGGCTTCTGCATAGGGCTTCAATAACAATGTTGCATTTGTTGAAGCATCAATCACCAATTGTGTAGCCTCATTCAAACCATTCTAATACATTTCTATCTGAATACATCGTTTGATGCCATGATGCAGGTACCTCTGAAGCAGTTCCTCCAACCTTTCTCATGACTCACTTAGTGACTTTCGAGGAACTTGATAGAAATTGTTGATGTTATTCCGAAGTTTCGCATTCTTTGATTGGGGAAAATATTTCCTTAGGAACTTCTCAACTTAGCATTCCATGAAGTGATGGACTCAGTTGGCAAGGAGTATCGCCATGCTCCAGCACTATCCCTAAAAGAATAG

mRNA sequence

ATGGTCCACTTTAATGTGGCTCAAGTGAACGACGCTGTCATAGACGAGGGGAATCAGGTCAGCTTTATCTTGGAATCTCTTCTGAAGAGTTTCCTACAGTTTCGCACAAATGCTGTAATGAACAAGATAGAGTACAACCTTACCACGCTCTTAAATGAGCTACAGATTTTTCAATCTCTTATGAAAAATAAGGAACTTGAAGGAAAGGCAAATGTTGTCTCCTCAAAACGGTTTCATCAAGGTTCGACCTCAGGAACCAAATCTGCACTTTCTTCTTCTGAAATAAGACTTTCAAGAAGAAGAAGAACAATGGGAATTAGTTCCCAGAGGCAGCTTGATGCTGGGGAAATGACTCTCAAAGTCGGAATGGGAGATGTCGTCTCAGCCATCGCAATGGGAGACCTAAAATCTACTACTACATCATCATCTGCTAATCCCTTGGATGCCTTTGCTGATTCAACCCTTGATTTCGACCACGATGCTTATTACTTGAGATTCTTTATAGATTGTACCTCTGAAGCAGAACTTCTCAACTTAGCATTCCATGAAGTGATGGACTCAGTTGGCAAGGAGTATCGCCATGCTCCAGCACTATCCCTAAAAGAATAG

Coding sequence (CDS)

ATGGTCCACTTTAATGTGGCTCAAGTGAACGACGCTGTCATAGACGAGGGGAATCAGGTCAGCTTTATCTTGGAATCTCTTCTGAAGAGTTTCCTACAGTTTCGCACAAATGCTGTAATGAACAAGATAGAGTACAACCTTACCACGCTCTTAAATGAGCTACAGATTTTTCAATCTCTTATGAAAAATAAGGAACTTGAAGGAAAGGCAAATGTTGTCTCCTCAAAACGGTTTCATCAAGGTTCGACCTCAGGAACCAAATCTGCACTTTCTTCTTCTGAAATAAGACTTTCAAGAAGAAGAAGAACAATGGGAATTAGTTCCCAGAGGCAGCTTGATGCTGGGGAAATGACTCTCAAAGTCGGAATGGGAGATGTCGTCTCAGCCATCGCAATGGGAGACCTAAAATCTACTACTACATCATCATCTGCTAATCCCTTGGATGCCTTTGCTGATTCAACCCTTGATTTCGACCACGATGCTTATTACTTGAGATTCTTTATAGATTGTACCTCTGAAGCAGAACTTCTCAACTTAGCATTCCATGAAGTGATGGACTCAGTTGGCAAGGAGTATCGCCATGCTCCAGCACTATCCCTAAAAGAATAG

Protein sequence

MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSLMKNKELEGKANVVSSKRFHQGSTSGTKSALSSSEIRLSRRRRTMGISSQRQLDAGEMTLKVGMGDVVSAIAMGDLKSTTTSSSANPLDAFADSTLDFDHDAYYLRFFIDCTSEAELLNLAFHEVMDSVGKEYRHAPALSLKE

Homology

[Close]

BLAST of Moc06g15010 vs. NCBI nr
Match: TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-29
Identity = 87/170 (51.18%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           MVHFN+A++N+AVIDE +QVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQ F+SL
Sbjct: 111 MVHFNMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESL 170

Query: 61  MKNKELEGKANV-VSSKRFHQGSTSGTKSALSSSEIRLSRRRR----------------- 120
           MK K  +G+ANV  S+++F++GS SGTKS   SS+ + S++++                 
Sbjct: 171 MKIKGQKGEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGNKANLAAAKISKK 230

Query: 121 ----------------TMGISSQRQLDAGEMTLKVGMGDVVSAIAMGDLK 137
                             GISS +QL+ GEMT++VG G VVSAIA+G L+
Sbjct: 231 AKAAKGICATNHVCSSFQGISSWQQLETGEMTMRVGTGHVVSAIAVGGLR 280

[Close]

BLAST of Moc06g15010 vs. NCBI nr
Match: KAA0033218.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK12426.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 7.7e-26
Identity = 77/150 (51.33%), Postives = 107/150 (71.33%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           M+HFN+A+VN+  IDE NQVSFILE LLKSF+ F+TNA +NKIE+NLTT LNELQ FQ+L
Sbjct: 60  MMHFNIAKVNNGAIDEANQVSFILEFLLKSFIPFQTNASLNKIEFNLTTFLNELQRFQNL 119

Query: 61  MKNKELEGKANVVSSKR-FHQGSTSGTKSALSSSEIRLSRR-----------RRTMG--I 120
              KE E +ANV ++KR F +GS+S +K+  S   +++ ++           ++T+G   
Sbjct: 120 TMGKEKEVEANVAATKRKFSRGSSSKSKTGPSKPNLKIEKKGKGKTPKQNKEKKTIGKEN 179

Query: 121 SSQRQLDAGEMTLKVGMGDVVSAIAMGDLK 137
           SS ++L  GE+TLKVG G++V A A+GDLK
Sbjct: 180 SSWKKLSEGEITLKVGTGEMVLAKAVGDLK 209

[Close]

BLAST of Moc06g15010 vs. NCBI nr
Match: KAA0035295.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14341.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-25
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           M+HFN+A+VN   IDE NQVSFILESL KSF+ F+TNA +NKIE+NLTTLLNELQ FQ+L
Sbjct: 42  MMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNASLNKIEFNLTTLLNELQRFQNL 101

Query: 61  MKNKELEGKANVVSSK-RFHQGSTSGTKSALSSSEIRLSRR------RRTMGISSQRQLD 120
            K K  E + NV ++K +F +GS+S +K+  S    ++ ++      ++    SS ++L 
Sbjct: 102 TKGKGKEVEENVATTKGKFKRGSSSKSKTGPSKPNRKIEKKGKGKTLKKNKETSSWKRLS 161

Query: 121 AGEMTLKVGMGDVVSAIAMGDLK 137
            GE+TLKVG  ++VSA AMGDLK
Sbjct: 162 EGEITLKVGTEEMVSAKAMGDLK 184

[Close]

BLAST of Moc06g15010 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-24
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           MVHFNVA++N AVIDE +QVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQ F+SL
Sbjct: 136 MVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESL 195

Query: 61  MKNKELEGKANV-VSSKRFHQGSTSGTKSALSSSEIRLSRRRRTMGISSQRQLDAGEMTL 120
           MK K  +G+ANV  S+++FH+GSTSGTKS  SSS  +  ++++  G  ++  L A + T 
Sbjct: 196 MKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-GQGNKANLAAAKTTK 255

[Close]

BLAST of Moc06g15010 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.5e-24
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           MVHFNVA++N AVIDE +QVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQ F+SL
Sbjct: 135 MVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESL 194

Query: 61  MKNKELEGKANV-VSSKRFHQGSTSGTKSALSSSEIRLSRRRRTMGISSQRQLDAGEMTL 120
           MK K  +G+ANV  S+++FH+GSTSGTKS  SSS  +  ++++  G  ++  L A + T 
Sbjct: 195 MKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-GQGNKANLAAAKTTK 254

[Close]

BLAST of Moc06g15010 vs. ExPASy TrEMBL
Match: A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 87/170 (51.18%), Postives = 114/170 (67.06%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           MVHFN+A++N+AVIDE +QVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQ F+SL
Sbjct: 111 MVHFNMAEMNEAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESL 170

Query: 61  MKNKELEGKANV-VSSKRFHQGSTSGTKSALSSSEIRLSRRRR----------------- 120
           MK K  +G+ANV  S+++F++GS SGTKS   SS+ + S++++                 
Sbjct: 171 MKIKGQKGEANVATSTRKFYRGSISGTKSMPYSSDNKKSKKKKGGQGNKANLAAAKISKK 230

Query: 121 ----------------TMGISSQRQLDAGEMTLKVGMGDVVSAIAMGDLK 137
                             GISS +QL+ GEMT++VG G VVSAIA+G L+
Sbjct: 231 AKAAKGICATNHVCSSFQGISSWQQLETGEMTMRVGTGHVVSAIAVGGLR 280

[Close]

BLAST of Moc06g15010 vs. ExPASy TrEMBL
Match: A0A5A7SRQ3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1591G00070 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 77/150 (51.33%), Postives = 107/150 (71.33%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           M+HFN+A+VN+  IDE NQVSFILE LLKSF+ F+TNA +NKIE+NLTT LNELQ FQ+L
Sbjct: 60  MMHFNIAKVNNGAIDEANQVSFILEFLLKSFIPFQTNASLNKIEFNLTTFLNELQRFQNL 119

Query: 61  MKNKELEGKANVVSSKR-FHQGSTSGTKSALSSSEIRLSRR-----------RRTMG--I 120
              KE E +ANV ++KR F +GS+S +K+  S   +++ ++           ++T+G   
Sbjct: 120 TMGKEKEVEANVAATKRKFSRGSSSKSKTGPSKPNLKIEKKGKGKTPKQNKEKKTIGKEN 179

Query: 121 SSQRQLDAGEMTLKVGMGDVVSAIAMGDLK 137
           SS ++L  GE+TLKVG G++V A A+GDLK
Sbjct: 180 SSWKKLSEGEITLKVGTGEMVLAKAVGDLK 209

[Close]

BLAST of Moc06g15010 vs. ExPASy TrEMBL
Match: A0A5D3CRD1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00790 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-25
Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           M+HFN+A+VN   IDE NQVSFILESL KSF+ F+TNA +NKIE+NLTTLLNELQ FQ+L
Sbjct: 42  MMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNASLNKIEFNLTTLLNELQRFQNL 101

Query: 61  MKNKELEGKANVVSSK-RFHQGSTSGTKSALSSSEIRLSRR------RRTMGISSQRQLD 120
            K K  E + NV ++K +F +GS+S +K+  S    ++ ++      ++    SS ++L 
Sbjct: 102 TKGKGKEVEENVATTKGKFKRGSSSKSKTGPSKPNRKIEKKGKGKTLKKNKETSSWKRLS 161

Query: 121 AGEMTLKVGMGDVVSAIAMGDLK 137
            GE+TLKVG  ++VSA AMGDLK
Sbjct: 162 EGEITLKVGTEEMVSAKAMGDLK 184

[Close]

BLAST of Moc06g15010 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           MVHFNVA++N AVIDE +QVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQ F+SL
Sbjct: 136 MVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESL 195

Query: 61  MKNKELEGKANV-VSSKRFHQGSTSGTKSALSSSEIRLSRRRRTMGISSQRQLDAGEMTL 120
           MK K  +G+ANV  S+++FH+GSTSGTKS  SSS  +  ++++  G  ++  L A + T 
Sbjct: 196 MKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-GQGNKANLAAAKTTK 255

[Close]

BLAST of Moc06g15010 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MVHFNVAQVNDAVIDEGNQVSFILESLLKSFLQFRTNAVMNKIEYNLTTLLNELQIFQSL 60
           MVHFNVA++N AVIDE +QVSFILESL +SFLQFR+NAVMNKI Y LTTLLNELQ F+SL
Sbjct: 136 MVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESL 195

Query: 61  MKNKELEGKANV-VSSKRFHQGSTSGTKSALSSSEIRLSRRRRTMGISSQRQLDAGEMTL 120
           MK K  +G+ANV  S+++FH+GSTSGTKS  SSS  +  ++++  G  ++  L A + T 
Sbjct: 196 MKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKG-GQGNKANLAAAKTTK 255

The following BLAST results are available for this feature:

BLAST of Moc06g15010 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96755.1	2.6e-29	51.18	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033218.1	7.7e-26	51.33	gag/pol protein [Cucumis melo var. makuwa] >TYK12426.1 gag/pol protein [Cucumis ...	[more]
KAA0035295.1	2.9e-25	52.45	gag/pol protein [Cucumis melo var. makuwa] >TYK14341.1 gag/pol protein [Cucumis ...	[more]
KAA0044955.1	2.5e-24	61.16	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.5e-24	61.16	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g15010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g15010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BE74	1.2e-29	51.18	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049...	[more]
A0A5A7SRQ3	3.7e-26	51.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1591G000...	[more]
A0A5D3CRD1	1.4e-25	52.45	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00790...	[more]
A0A5A7SMH8	1.2e-24	61.16	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.2e-24	61.16	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Moc06g15010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g15010.1	Moc06g15010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding