Moc06g13620 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g13620
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotransposable element Tf2
Location	chr6: 10708638 .. 10710028 (-)
RNA-Seq Expression	Moc06g13620
Synteny	Moc06g13620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTGCCCCTAGCCGGAGACGGCCAAACTCACAGCAAAGAAATGAGAATCAACCCATTTCTTCTCAAATAGTAGCATCCTCTTCCGAAACTACTAACTCAAAGGGCAAAAGACCCATTTCTCAATCATCTGTACCATCCCCAATGAGTGCAGAAAACTACGCCATGGATATCCAGTTTGAGACGGTATCTAGACGTCAACAAGGTTCTTCCCAGAAGACCTTGTCCATTCAAGCAAGCTTTTCAAACCTCTCAATTCCTTCAAGCACATTGTTACGCTCTTTCGGCACCACAACCAAGAGCAGACGTCCTGCTTCTACAGCCACTTCTTCAAAATCTACGATTCCGAGGAATCCTTCCTCGTTTTCTCAAATTGTCAGGCAGAAAGTTTTTCAGCCAAGACCTCCAATCAGAGGCTATTTCACCAAAACTACCATGGTTGATTCAACCATTGAACCAGAGTTCGACGGACCTTCGGTCCAAGAAGTCTACAAACAAATATTTCCTCATGGCTTCAACTTCTTGCTAGAGGATCTTCAAAAGACTCGTATTTTTTATGAGTTTATTCTGGTTGATTCAAAATTAGCAGAAATAACTCATATTCCAGATAAAAAAGATCCCTCCAGGACCATTTATTCAAAATTTAGAATCTTCCGTGTTTTTGTCCCTTCCTCCTAGAAACAGGGTATGTTCGCAGGGAAGAAATTTACAGAACCCTTTAAGCCACAAACTTACAACTATCGCGATTACATGAAGGCGTTGTATGTTGTCTTCTGGCTTCAAGGTTACAACCATTCCTGGTTTGTGACTTTTTGTAAGCAAGCTTACAAATCGCACTTTCCAAACTGGTTTCAAAGTTGGTGGACGTACTTTGGTCTCTCCGAGGAAATTTTTTCGGTCGAGGTTTAATGTTCGTACCATCTCTTCCAACAAAGTATCTACTCGTCTCCCCTTTCTAAGACGTTTAAATTCGCTTTGTATTTCCAAGTTCTATGGATCTTTTGCTGGAATTTCCAGCTAGGACTTTGAGCAAATCTCTACGCATCAAATGGTGGGAAAAATTTCACTACTCTTACCCAGAAGCTGAAAAGATGAAAATCTGGTTCAAGACTAACGTTCATCTCCAAGACATGACAAGGCAAGAAGACGAGAGTTTCCTTCTCGCCAAAAACGCAGTCATGAGTTTGCTAGTTGGAGCCAGGTCTCAGGCCGACTTCAATTCAGTTCTCAATACCGTCGCGATTCAGATCTTTGATCCAGACGACCTTCAAGCGGATGCTGGCTCCTCCGCCTTTGTCAATAATGATGTTGAAGACGACGAAGACGACTTCGATCCCTTCGTAGGCTACGACATCAACGACCCATATTTAGATTCACAGCCCTACTGA

mRNA sequence

ATGGAACCTGCCCCTAGCCGGAGACGGCCAAACTCACAGCAAAGAAATGAGAATCAACCCATTTCTTCTCAAATAGTAGCATCCTCTTCCGAAACTACTAACTCAAAGGGCAAAAGACCCATTTCTCAATCATCTGTACCATCCCCAATGAGTGCAGAAAACTACGCCATGGATATCCAGTTTGAGACGGTATCTAGACGTCAACAAGGTTCTTCCCAGAAGACCTTGTCCATTCAAGCAAGCTTTTCAAACCTCTCAATTCCTTCAAGCACATTGTTACGCTCTTTCGGCACCACAACCAAGAGCAGACGTCCTGCTTCTACAGCCACTTCTTCAAAATCTACGATTCCGAGGAATCCTTCCTCGTTTTCTCAAATTGTCAGGCAGAAAGTTTTTCAGCCAAGACCTCCAATCAGAGGCTATTTCACCAAAACTACCATGGTTGATTCAACCATTGAACCAGAGTTCGACGGACCTTCGGTCCAAGAAGGTATGTTCGCAGGGAAGAAATTTACAGAACCCTTTAAGCCACAAACTTACAACTATCGCGATTACATGAAGGCGTTGTATGTTGTCTTCTGGCTTCAAGGTTACAACCATTCCTGGTTTGTGACTTTTTCTAGGACTTTGAGCAAATCTCTACGCATCAAATGGTGGGAAAAATTTCACTACTCTTACCCAGAAGCTGAAAAGATGAAAATCTGGTTCAAGACTAACGTTCATCTCCAAGACATGACAAGGCAAGAAGACGAGAGTTTCCTTCTCGCCAAAAACGCAGTCATGAGTTTGCTAGTTGGAGCCAGGTCTCAGGCCGACTTCAATTCAGTTCTCAATACCGTCGCGATTCAGATCTTTGATCCAGACGACCTTCAAGCGGATGCTGGCTCCTCCGCCTTTGTCAATAATGATGTTGAAGACGACGAAGACGACTTCGATCCCTTCGTAGGCTACGACATCAACGACCCATATTTAGATTCACAGCCCTACTGA

Coding sequence (CDS)

ATGGAACCTGCCCCTAGCCGGAGACGGCCAAACTCACAGCAAAGAAATGAGAATCAACCCATTTCTTCTCAAATAGTAGCATCCTCTTCCGAAACTACTAACTCAAAGGGCAAAAGACCCATTTCTCAATCATCTGTACCATCCCCAATGAGTGCAGAAAACTACGCCATGGATATCCAGTTTGAGACGGTATCTAGACGTCAACAAGGTTCTTCCCAGAAGACCTTGTCCATTCAAGCAAGCTTTTCAAACCTCTCAATTCCTTCAAGCACATTGTTACGCTCTTTCGGCACCACAACCAAGAGCAGACGTCCTGCTTCTACAGCCACTTCTTCAAAATCTACGATTCCGAGGAATCCTTCCTCGTTTTCTCAAATTGTCAGGCAGAAAGTTTTTCAGCCAAGACCTCCAATCAGAGGCTATTTCACCAAAACTACCATGGTTGATTCAACCATTGAACCAGAGTTCGACGGACCTTCGGTCCAAGAAGGTATGTTCGCAGGGAAGAAATTTACAGAACCCTTTAAGCCACAAACTTACAACTATCGCGATTACATGAAGGCGTTGTATGTTGTCTTCTGGCTTCAAGGTTACAACCATTCCTGGTTTGTGACTTTTTCTAGGACTTTGAGCAAATCTCTACGCATCAAATGGTGGGAAAAATTTCACTACTCTTACCCAGAAGCTGAAAAGATGAAAATCTGGTTCAAGACTAACGTTCATCTCCAAGACATGACAAGGCAAGAAGACGAGAGTTTCCTTCTCGCCAAAAACGCAGTCATGAGTTTGCTAGTTGGAGCCAGGTCTCAGGCCGACTTCAATTCAGTTCTCAATACCGTCGCGATTCAGATCTTTGATCCAGACGACCTTCAAGCGGATGCTGGCTCCTCCGCCTTTGTCAATAATGATGTTGAAGACGACGAAGACGACTTCGATCCCTTCGTAGGCTACGACATCAACGACCCATATTTAGATTCACAGCCCTACTGA

Protein sequence

MEPAPSRRRPNSQQRNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAENYAMDIQFETVSRRQQGSSQKTLSIQASFSNLSIPSSTLLRSFGTTTKSRRPASTATSSKSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQEGMFAGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFSRTLSKSLRIKWWEKFHYSYPEAEKMKIWFKTNVHLQDMTRQEDESFLLAKNAVMSLLVGARSQADFNSVLNTVAIQIFDPDDLQADAGSSAFVNNDVEDDEDDFDPFVGYDINDPYLDSQPY

Homology

[Close]

BLAST of Moc06g13620 vs. NCBI nr
Match: KAA0050443.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 325.1 bits (832), Expect = 7.0e-85
Identity = 217/478 (45.40%), Postives = 259/478 (54.18%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQ------RNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+ P +Q+      +N +     Q + SSSETT SKGK P +QSS PS MSAEN
Sbjct: 1   MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGK-PSTQSSAPSLMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAS-TATSS 120
           YAMD+QFE VSRR QGS+Q+TL+IQ+  S+L  IPS+ LLR  G TT ++R AS TA+SS
Sbjct: 61  YAMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR KVFQPRP I GYFTKTTMVD TIEPEFDGPSV E         
Sbjct: 121 RSAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+ PFKP +YNYRDY KA Y+VFWLQ YNHSWF+TF                    
Sbjct: 241 VGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFMTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSENFKALSK 360

[Close]

BLAST of Moc06g13620 vs. NCBI nr
Match: KAA0040832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-84
Identity = 214/478 (44.77%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQ------RNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP +Q+      +N N     Q VA+SS TT S+ K P +QSS PSPMSAEN
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSP-AQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAS-TATSS 120
           YAMD+QFE VSRR+QGS+Q+TL+IQ+  S+L  IP + LL   G T  ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR  +FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLSEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+ PFKP +YNYRDY KA Y+VFWLQ YNHSWFVTF                    
Sbjct: 241 VGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. NCBI nr
Match: TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 324.3 bits (830), Expect = 1.2e-84
Identity = 214/478 (44.77%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQ------RNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP +Q+      +N N     Q VA+SS TT S+ K P +QSS PSPMSAEN
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSP-AQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAS-TATSS 120
           YAMD+QFE VSRR+QGS+Q+TL+IQ+  S+L  IP + LL   G T  ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR  +FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+ PFKP +YNYRDY KA Y+VFWLQ YNHSWFVTF                    
Sbjct: 241 VGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. NCBI nr
Match: KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 5.6e-82
Identity = 215/478 (44.98%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQR--NENQPISS----QIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP ++++    NQ  SS    Q VASSS TT S+ + P SQSS PSPMSAEN
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFP-SQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAST-ATSS 120
           YAMD+QFE VSRR+QGS+++TL+IQ+  S+L  IPS+ LLR  G TT ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR K+FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+  FK  +YNYRDY KA Y+VFWL  YNH WFVTF                    
Sbjct: 241 VGRKFSHSFKQPSYNYRDYTKAWYIVFWLHAYNHFWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFPVEVQRSYHFFQQSIYSSPLSKTFRFALYFKISWIFCWNFQLGPSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 7.3e-82
Identity = 215/478 (44.98%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQR--NENQPISS----QIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP ++++    NQ  SS    Q VASSS TT S+ + P SQSS PSPMSAEN
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFP-SQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAST-ATSS 120
           YAMD+QFE VSRR+QGS+++TL+IQ+  S+L  IPS+ LLR  G TT ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR K+FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+  FK  +YNYRDY KA Y+VFWL  YNH WFVTF                    
Sbjct: 241 VGRKFSHSFKQPSYNYRDYTKAWYIVFWLHAYNHFWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFPVEVQRSYHFFQQSIYSSPLSKTFRFALYFKISWIFCWNFQLGPSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 3.4e-85
Identity = 217/478 (45.40%), Postives = 259/478 (54.18%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQ------RNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+ P +Q+      +N +     Q + SSSETT SKGK P +QSS PS MSAEN
Sbjct: 1   MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGK-PSTQSSAPSLMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAS-TATSS 120
           YAMD+QFE VSRR QGS+Q+TL+IQ+  S+L  IPS+ LLR  G TT ++R AS TA+SS
Sbjct: 61  YAMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR KVFQPRP I GYFTKTTMVD TIEPEFDGPSV E         
Sbjct: 121 RSAIPRNPSSYSQIVRPKVFQPRPSINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHE 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLTKTMTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+ PFKP +YNYRDY KA Y+VFWLQ YNHSWF+TF                    
Sbjct: 241 VGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFMTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSENFKALSK 360

[Close]

BLAST of Moc06g13620 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 5.8e-85
Identity = 214/478 (44.77%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQ------RNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP +Q+      +N N     Q VA+SS TT S+ K P +QSS PSPMSAEN
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSP-AQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAS-TATSS 120
           YAMD+QFE VSRR+QGS+Q+TL+IQ+  S+L  IP + LL   G T  ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR  +FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLSEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+ PFKP +YNYRDY KA Y+VFWLQ YNHSWFVTF                    
Sbjct: 241 VGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 5.8e-85
Identity = 214/478 (44.77%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQ------RNENQPISSQIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP +Q+      +N N     Q VA+SS TT S+ K P +QSS PSPMSAEN
Sbjct: 1   MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSP-AQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAS-TATSS 120
           YAMD+QFE VSRR+QGS+Q+TL+IQ+  S+L  IP + LL   G T  ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPKTALLCPSGPTAPNKRAASPAASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR  +FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPNIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCNQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLSKTRTFYEYILVDSKSAKITHVPDKIDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+ PFKP +YNYRDY KA Y+VFWLQ YNHSWFVTF                    
Sbjct: 241 VGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFSVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLESSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.7e-82
Identity = 215/478 (44.98%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQR--NENQPISS----QIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP ++++    NQ  SS    Q VASSS TT S+ + P SQSS PSPMSAEN
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFP-SQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAST-ATSS 120
           YAMD+QFE VSRR+QGS+++TL+IQ+  S+L  IPS+ LLR  G TT ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPGASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR K+FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+  FK  +YNYRDY KA Y+VFWL  YNH WFVTF                    
Sbjct: 241 VGRKFSHSFKQPSYNYRDYTKAWYIVFWLHAYNHFWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFPVEVQRSYHFFQQSIYSSPLSKTFRFALYFKISWIFCWNFQLGPSGNFKALSK 360

[Close]

BLAST of Moc06g13620 vs. ExPASy TrEMBL
Match: A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 215/478 (44.98%), Postives = 258/478 (53.97%), Query Frame = 0


Query: 1   MEPAPSRRRPNSQQR--NENQPISS----QIVASSSETTNSKGKRPISQSSVPSPMSAEN 60
           MEP P R+RP ++++    NQ  SS    Q VASSS TT S+ + P SQSS PSPMSAEN
Sbjct: 1   MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFP-SQSSAPSPMSAEN 60

Query: 61  YAMDIQFETVSRRQQGSSQKTLSIQASFSNL-SIPSSTLLRSFGTTTKSRRPAST-ATSS 120
           YAMD+QFE VSRR+QGS+++TL+IQ+  S+L  IPS+ LLR  G TT ++R AS  A+SS
Sbjct: 61  YAMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPPIPSTELLRPSGPTTPNKRAASPGASSS 120

Query: 121 KSTIPRNPSSFSQIVRQKVFQPRPPIRGYFTKTTMVDSTIEPEFDGPSVQE--------- 180
           +S IPRNPSS+SQIVR K+FQPRPPI GYFTKTTMVD TIEPEFDGPSVQE         
Sbjct: 121 RSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHG 180

Query: 181 ---------------------------------------------------------GMF 240
                                                                    GMF
Sbjct: 181 FNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF 240

Query: 241 AGKKFTEPFKPQTYNYRDYMKALYVVFWLQGYNHSWFVTFS------------------- 300
            G+KF+  FK  +YNYRDY KA Y+VFWL  YNH WFVTF                    
Sbjct: 241 VGRKFSHSFKQPSYNYRDYTKAWYIVFWLHAYNHFWFVTFCKQAYKMHFPNWFQNWWMYF 300

Query: 301 -------------------------------------------------------RTLSK 330
                                                                  + LSK
Sbjct: 301 GLSEEIFPVEVQRSYHFFQQSIYSSPLSKTFRFALYFKISWIFCWNFQLGPSGNFKALSK 360

The following BLAST results are available for this feature:

BLAST of Moc06g13620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050443.1	7.0e-85	45.40	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040832.1	1.2e-84	44.77	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK17808.1	1.2e-84	44.77	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032918.1	5.6e-82	44.98	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28082.1	7.3e-82	44.98	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Moc06g13620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g13620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3G5	3.4e-85	45.40	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]
A0A5A7TBK1	5.8e-85	44.77	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2Q6	5.8e-85	44.77	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQU5	2.7e-82	44.98	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DX32	3.5e-82	44.98	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Moc06g13620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g13620.1	Moc06g13620.1	mRNA