Moc06g07580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g07580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr6: 5513406 .. 5522091 (-)
RNA-Seq Expression	Moc06g07580
Synteny	Moc06g07580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGGGGTGCTCGGTCGGTGAGCACAAGCACTGTCTTTTATCCGACCTGCCGCCACCATCACCACTCCTGGCCACTGCCGCAGCCTGCAACAGGAGCCAGTTGCATTGGACACCCAACTCCCTCCGGCTTACCAGGTGAGGCTGCAAATCATGTGGGTAAGGGTAACACATTTCTCTTCTCTCCTCCCTTCTAAATTCTAATGTTTGTTTTTGATATATATTATGGTGTTATCTTGCGGAGGCTGAAAAGAAAGGAATATGTGGAGTTGGAGTTTATATAGAGAAAAGAAGAGAAGCAAAGGTGTGGTTGATTGATACAAAAAAGGATTTTGGATGGATTCCCATCATCCTCATAAAGTGACTTCCTTTTCATTGTTTTAATTATCGTTGATTTTTGTGCCAAATACTTCTATCCTCATCTCCCATGACACATACTTTTTTGTTGTATCCTTCAAAATTTACCCATGTCTTTCCTAATCCTAGACCTATTTTGTTTATAAAATTTATTACTAGGGAATACAAATTTATTCATTATCTATTGCCTTTCTCAAATATGGCCTATGGGGGCACGCGGAACCCTTTACTTCTTTCCCGTGAAAGAAAAGGGTCCATTACAGAAGAATCTAATTCTTCTTCCTCTATCAAAAGAAAAGTTGGCTAGGCTTTTTCTTTGTGGCAGATAAAAAGGAAGGATTCTATTTTTTCTGTTTACATTAGAGAATATAGAGAGAAATACAGCCATAGAGAGTTATTTTGAGAATGTTGAACAACCCCACTTACGAGTTATATATCCCATGTCAGGTAGCTAAGTGCAAATGGAGAAATCTGCAATTTATTGGATTAGAGCTTATTCAGTAGAAGAATGATGATCATAAACATAAAATTGGTGGGGACTATTTTGGTTTAGAAGTGTTTGGAACAGGAACACAACAAAGTTGAACTAGTACAAAGCTTGAGAGATGCTTACAAGGCATTACTTGTTTGGATACAGATTAAATAATTTATTGTCTGATGAAAAAAGTGTTGGGATTGTAAAGTGTGTTACAATCAAAGCCTCACATCGATTAGTGAAGAGAGAGATCTATGGTATATAGATAAAGATAATTATTTTCATTGATACGAGATTTTTTTTGGTGAAATCAAAAGCAAAGTCGTGAGGGCTATGTTCAAAGTGAACAATATCATACAATTATTATCATATCATACAATTATGGAGATATTTGGGATATGAGAGTTGGCAGACAGGTCGTGGGTGTGGAATTGTTGAGTGGGGTGGGGCTATTTCCCAACTTTGGGTGTAAATTGCTGACTCGTTTCCTAGTCAGATTCTTTAAGGAGAGTTTTTTTCTGCATCAGCTTGTATGTGTCCGAATCTTTGATTGATGAGAAACGACGACACAGAGTATAAAGAGGCTATCTTGTCTTCATTTGAAAGAAAGAAATGCAGGCAACTTATTCCGTCATCACTCATTTGTTAAACATGTCTAATTGGAGATATAAAAATGGTGTCATCGCGACACAAGTATTTGAACTCGAACATCATAGTTTTGGTTAATTGAACCGTGATTAAAAGTTTAGTGCACGCCAGTCCCAGTTCAATGAAGCTAGCATGTCATTATTAGTAATTTGAATTAGTGTAATTTGAATTATCAAATGTTAATAATTTTCTCACCCGCACGCATTTTATTTGAATGATGCAGAGAGATGATAAACTTGGTAAATGTATGAATTTGGTAAAAAAGGGGAAAAAAAGGAGGAAATTGGGCGGGTTTTAAAAATTAAACTGGTGTGTACTCCTAAAATGGTATATCTCCCTCTCCCCCATGCTTCCAACGGACACCAGATTCAAATCTTTCAATACATGTTGGATCGACACAACATCTGCAGTCTGATCCTATTTCTGTAAGGTCAGATTCTTTATCCTTCAAAAGATTTATGACTTATAGGCAATCAGATTCTACATAAATCGATAAATTTCCTTCCATCGTTATCACTCTTAATCCTTCGCAAATAGCCATGGCTTCCAGGATTTTGATCTTTGGTTGCAGAACTATCAGACGACTCCCTGACAACACTGCCTCACCACACCAATCACGAACTATCTATCCAAGACCACCGCACCTTGATCTCGCTTAATTACTTAAATCATAATATAATTTAATTTTACTCTGCTATTTATATACCTTTTTGTTTCCTCGCCTTATATTCTCCTACTTAATTTCGATCAACTTAAATTCTTTGTAAAAGTACCTTGATCTTCTAAGAAATGTTAAGTTTCCGTATTATCAAAATAGTTTATGATTTTTTTTAATAGAAAAAAAAAGATTATAACTTATTCTCCAAGAAGAATAAAAAAAGCTTATGAAAATTTTCTGGTAATATCTCAATATTGTATAATTGTGATTAAAAAATGATATTGAGTAGGAGTGGGTGATTGAAATATAATTTTAAGATTAAGTAATTATAATCTTGTATCCTTTTATTAAAAGGAATATGACATCTTATTATTAGAGGTTTATACAAATATAAAGCATAATTATCTTATAAAATAGTCTGATTTCATATAGATAAAGATTTATAAAATGCTTAACAATAAAACATTAGTATTTAAAATTTTTAATAAATGATATAATGTTATCGGACCAAATGTGAATATTTGTTTTCGTTTAGGAAAAGAACAGTGGAAAGAAAAATAGACAATTAATAACAAAAAAATGAGAATCTAAGGACAACGATATTGTTTCTTGTTTCTTATTTTTAATTTTCTTAAGAAATTTAACCATTTTGCAAGTATCTATTTTTCTTGTTTCTCTTTTTGGGAACATTATCAAACTTATATAAAAAATTTTGGAAACAAAACAAGTTTCTTTTTTCTTGTTCTCATTTTCAATTTATTCCAAAATATAAATAAAAATATTGTTTTATCATACTTAAATTCGTGGAGGTTGGGACACTGCAATTCATTTTTCTTATTAAAAATGAACAAACATAGCAAAAAACATTAACATTACTAAACGGGTCTTAATATTTTGATTTTTTTTTTTAAAGTTCAAACGAAGAAAAATAGTCATATATGTGAATCAGGTAAAAATAGAATTCTTTTTAGGTTATTACTTTTTTCAGATCAACAACAGAAAGAATGAGGATTGAATCATTAACTTTTACAACAGTACATGTGTATAACCAGTGCACAATAAGCTAGAATATTACCATCCAAATAAAATAGACGGTTTATATTTACGTTGAAAATTCAGAAAATGTTATATAATTAAGATAGAGAATTCACTAGTTTAATTTATATATAAAAAAAATATTTTAGTTATTGCTATGTAATTTTAATAAATTATTTAAATCAAACTTGGTATGGGTTGTGGCATATTGAATTTATTCATTCATCATATCAACAAATGTCTACATTTACAAATATATGGCTGAAAAAAATACATGGAAATTTTTAATGGTAAGAGTAGAAGATCAAACTATCTATCGTAGAGATGATAATAAATGTTTTATCCACTTAAGCTATGCTCTAATGGACATATGAACTAGATGAAGTCACGTGTAGTAAATTATGTATATGTTTTAAAATTAATTTGAGTTCTTATTAAATGATTGGGAGAAAATAAAAATTAAAGATTAAAATGAATTTTTATTCAAAGGAGAGATTAAAATAGGCTAAGCTCAAATGAATGAGCTACCATTAGAATATCTCAATTAAAAGACTAAAAAGAACATACGTACAAAAAATTAACAACCAAAACAAATTTAAATTTATTTTATTATATATTAATATATGTAGTTCACAATAAGAACATCTTCTGTCTTTAAGTCCATATACAGAATTTTTAATAAACTTCCTTTGCCCTCTGTCGTCCGGTCAGAAAAACATTTTTAATCTTTATTTAATAAAGTGGGAAATAAATTTGATTGTAATATCCCTTTTTTTTTTTGTGACTTAGCATGATAGTCCACTAAAAGACTATAATCAAATTGAATAATTTGGTATTTTATATAGTGGAAAAAAAATAAAACAAAAGTGGGCCTTTTCTTCGGTCATTGAATTGGTCCAAGTTGATAGGCGGCCCATTGAGGGCCCAGTTACCATTCAATTTGTAATCAGTAATGTATGATTTTCTAAGCTTATTGTCAATGGGAGACAATAACTGAAGAGGAAATAAATAGTCTTGAAATAATTAAAGACAATAAAATTTCAAATGCGAGATGTTGAAAATGTCAGGTTTAATTAAAATATTTAGTATTACTTCCTCACGTTAAAGCTAATTTTTTTCTCCCTCCTAAAATATTAAATAACAAAACTTTGATCTCATGAATATAATATATAAAGAGACTAGTTATTATGACATGTTTTTTTTTTCTTTGGAAGGATAAACAAAAAAGGAAAGAAAACTAAATAAAAAACAAAAAAAAACTGAGTAATTTGGCCATTATTTAAAAAATCTATTCAAAATGAAAACTAAATTAACAGTCTTCTAGAAGGAGATAATTAAATAAATATCAATGTATTTATGTTTCATTTCTTCATTCGGAAGGAAAAACTATTAAGTTAACAAGAACTCAAAAAAGGAAGTATAAATTTAAGGACTGAAAAATAAAAAAACAAAAACAAAAGCAAAAGTGTATGGTTCCAGAACATTTATTTTTTAAAGAAAAATCAAAACTCAAATGATAAACGTGAATTTTGTATTCACTACAAAACGGTGGACAACCTGTAAAAAATTATTCGGTAATAGAAAGAAGACAAAAAACAATTTATTATATTTTATATGAAGGATTTGTTTATTTAAAAGAATAAAGATTGAATTATGCATGCATGATCTAAAAAAGTTGTAATTATTCATAATTAAATATATGGTTGTATAAAAGTTTGAAACAAACCAACAAAAAAATCAATTGAAATGGCCCAATGTTGGCTCCACTTTTCAATTCTCTATCTTGTTTTAATCTCTTAATTAAGAAATAATTTTTTTGGCCAAATTATAAAACATACCTAAATTTAGTTTATTGTGGGCTCATTGTTTCCACTTGTGAATCAATATTATTAAATAATTCGAATGCTAATTTCACCATGGTCGGATCTATGGAAGTTTTTACCTTAAACAATTAATTCGTACTACAATAAATTTGACCCTTAATATAGTCTATTGTAGGGTCATCATTTGTTTCTACTCGTAAATTCTGTTACCATTATTAAAAGTCAAATTTGTTGTAGTATCGAGTAATTATTCTAAGCGAGCTTCTATTAATTCCTACGTTATTCTAAATTCTACCTCACCAATTTTAAGTTCAAAATATTAATAGATTCTGTTTTTAAGAAAGGTTAAGAACAATTTTTAGAAATAAGGAGAAAGTTTAGAGGTAATTTTGTAATTTAAACTTTTTTGGAACCAACTTTGACCCATTATTTTATATTGCTAAACTATTCAAAATAGAAAATTGGTTTTTCTCCCATATGCATCCCAATTCCCAATGTCCATTATTTTCTTATTAACACACATCATTCTATACAAAGTTAGCCAATTCGATGTGTATTCCTATGAAACTCAGACGTTCTAACATAATTATTCAAAATTATTTGTAGCTATCACAATGACAAATTATTTAAAATAACAATAGCAATATATGGCTACAATTCTTTTGACAGATATACACAGCACAAAAATAAAATTAAAAAAAAAAAACTTTTTAAAAATCTTCAATGATAAGATCTGTAATAATTTTCTCCACAACTGGGGTCAGAAAACAGATGGTCATAATAGAAAAATGAAATCTTTATTTATTTGTATTATTATTATTATTACTATTTTGGCTGTTCGTTATTTTAAAGAGTAATTCTGGGTAAATAATCTTAGGAATAGTAAAAAAATGGAAGAGAAAAAGGAAAAAAAAAAAAAAAGAGGAAGAAGAAGAAGAAGAAAAGACAAAGAAACAAAGAAACAAATTGAAGAAGAACCGACCAATGATTCTTAAATTTTGCTGCCTTTCTTTGTTTGAGACGGAGCCTACTTCTGGATTGGTTCTTTGGTCAAACGATGTTTTTAATGTCATTTTCTTAAAGTAAACGAGAAAAATTATATTTAAACTGATGCTCCATCGTTAATTTCCATAAAAAAAATGCTACTTTAAACCTTCATCCTTGTCCCTCTTTCTCTTTGTCAACCCAATAATATAATTACGACAAGATTTCCAAATACACTATTCTGCATACTTAATTATTCTATGGAAGACAGGATTTTCCATGTGGAAGTTTTTTTTACTCTCAAAAATGTTACTTTCAAGTATGATGCACGGTGCATCTGTATAGAGTTTCAACTTCTCAACTTTGAAATATTGTATTATATATTAAAATAATTTTTTTAAATAGGAAAAGAGAAAAGAAAAAAATATATGTTAGTGGATATTCAAACCTTAATTTTCTAAAAGCTAGATTTTTATCCAACATTTTCAAATGGTGTTGTTATCCAATTTGGACTTTGAGAAATTCTTTTCAATTTATATATTTACATTTGTTGTCGTTTTGTCTAATTTTTGCTAGCAACATTTATTTTTATCCAGCTTTGAAGATTCTATTGTTTTTCTTTTATATAATTTTTTTATTTGAACTTTTCAAAATCTATAAAAGTTAACAATTTAGAGAGTAATGGTCTAAAATAATACATTTTGTCTAAAATAATAAATCCTGATCCGAGCGAAATTCCGATCCGAAACGTGTAGAGTGAAACGACCGATCATTCGGGTGAGGCAAGACCGAGCCCTGATCATCGACTTAATCCGACCACCTTTGATAGGGGAGAACTAGTGACGAGCCTGAATGAAGCGACCGACCTCTCGGGTGAGGTAACGCCGAGCCCTGGTCATCGAATTAATTCGACCACCTTTGGCAGGGGAGAACCGGCTAAGGAGGTAGAATCTGTCCCTCTAACAGCCGAAAATCGACGGGTCAACATCAGAACCAGGTTGGGGGGATGAGGAAAGAGAAAGCCTTATAAACTTCATCAGAAGCAATGCCGACGTGTTCGCATTGTTGCCGGAAGACGTGCCGGGAATCGAGCTAGGAGTCATGGTACATCGACTCAATCTCGACGAGAGCTGTAAGCCAGTGAAACAGAAGCGTCGCGCGTTCAACCAAGAAAGTTACGAGATTGTAGCTGAACAGGTGGAGGAGCTACTGAAAGCAGGCTTCATTTAAGAAGTACATTATCCCCAGTGGATATCCAACGTAGTGTTGGTAAAGAAACCAAACGGCAAATGGAGAATGTGCATCGACTTCACGGACCTAAATAAGGTCTGTCCAAAGGATTCTTTTCATTTGCCTCGAATAGATCAACTATGTTTATGCAGGAATTTGCACAACGGTTCTGCACGAATCGAGCTCGAACCCGGTCTCCGGTTCCGACCTGAACACTAGAGTGGACCTGCACAAGAGGGCAAGCACTCCGACGCTCAAGTCAGTATAAATCGGGCTCCGTATTTAGTTCGAGGAGAGATTCGATACCTGAGCGTGAAATGAAGCCCTCTATTTATAGGTGACGGATCCGACAGCACACATGACCGGTGGTTACATGTCTTTTCTCATATCGGACCTGTCGGGTTCCGAGCAGGTCGGTCCCCGGTCAGGCCGAACCTTGGTGCCAATACTTCATCTTTTATAACAAGCAAACCCGGTCTCCTCGGCGGGACTGAGGTGGACCTAAGCAATCCTTTTCATTTAATTTCTTCAAATAAGGGTCCTCCACGTGTCTTGGGTATGTTTAACCCCAAACAAACTAGTTGATGCCACTGTAGGACATGAAAGATTGAGTTTCATGGATGCCCAACTCCCTTCAATATCTATTAGCTTGGTTCCCTACCAACTCTGTTTTCTAAATCCAAAACTGGATGCCAAGCGACTTTGATAAAACACCTTGCCTCGTCTACTACCATACTCTCAAAGGATATCGACAATACACTACCATGAGAGTAAGGGGCAATAAGTCATGACCGACTCAGCGACGCAAGCTTGGTAGAACCAAGCCGAGCAGGCCGAGTAGGGCTTGGGTCCGACCCAGCCGAGCACATCTCTACTTGGATCCGACCATTGCTCGACGCCGACCAAGTGCAATGAGGCACAAATCTACATTAATCAACAGATTTTGAAAGCAGAATCTACATTAATTGACAAATTTGGAAGAACAATTAAACAATCTCAACACGGCCAAACCAGAAGCGGGTCGATTTACCTAGCACAGTTAAAACATGAGATGGAGTAAAAACGACAGCGGGTATAAAACCAGTGGCTATGACCAAAGGGTTAGAAACCTATGAAAATGAAAGCAACAAAGTCAACTCCATCAACGAAGCTAAATATAAAGCTCTACTAGCAGGACTAAAAGTGGTCAGGTACGTTGGGGTCAGGAACATACTGATACTAAGTGATTCACAGCTGGTTGTAGGTTGGGTGAAAGAGGAGTTCAGGATAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAAAAACCAGCTCAACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCATAACGTCAACGCCAATGCATTAGCTCGATACTACAACTCGAAGGTTATTGTAACTAATCTTCGACAGGACAATCTTCCTACTAATAAAGTCTTTGACATTCGACGTGATACTTAA

mRNA sequence

ATGACCCGGGGTGCTCGGTCGGTGAGCACAAGCACTGTCTTTTATCCGACCTGCCGCCACCATCACCACTCCTGGCCACTGCCGCAGCCTGCAACAGGAGCCAGTTGCATTGGACACCCAACTCCCTCCGGCTTACCAGGTGAGGCTGCAAATCATGTGGGAATTTGCACAACGGTTCTGCACGAATCGAGCTCGAACCCGGTCTCCGGTTCCGACCTGAACACTAGAGTGGACCTGCACAAGAGGGCAAGCACTCCGACGCTCAAGTCAGTGACGGATCCGACAGCACACATGACCGGTGGTTACATGTCTTTTCTCATATCGGACCTGTCGGGTTCCGAGCAGGTCGGTCCCCGGTTGGGTGAAAGAGGAGTTCAGGATAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAAAAACCAGCTCAACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCATAACGTCAACGCCAATGCATTAGCTCGATACTACAACTCGAAGGTTATTGTAACTAATCTTCGACAGGACAATCTTCCTACTAATAAAGTCTTTGACATTCGACGTGATACTTAA

Coding sequence (CDS)

ATGACCCGGGGTGCTCGGTCGGTGAGCACAAGCACTGTCTTTTATCCGACCTGCCGCCACCATCACCACTCCTGGCCACTGCCGCAGCCTGCAACAGGAGCCAGTTGCATTGGACACCCAACTCCCTCCGGCTTACCAGGTGAGGCTGCAAATCATGTGGGAATTTGCACAACGGTTCTGCACGAATCGAGCTCGAACCCGGTCTCCGGTTCCGACCTGAACACTAGAGTGGACCTGCACAAGAGGGCAAGCACTCCGACGCTCAAGTCAGTGACGGATCCGACAGCACACATGACCGGTGGTTACATGTCTTTTCTCATATCGGACCTGTCGGGTTCCGAGCAGGTCGGTCCCCGGTTGGGTGAAAGAGGAGTTCAGGATAGAGAACCGCGAATGGCGAAATACCTTTCACAGGTAAAAAACCAGCTCAACCAGTTCTCAAAATATGAGATTCGACAAATTCCACGTGCTCATAACGTCAACGCCAATGCATTAGCTCGATACTACAACTCGAAGGTTATTGTAACTAATCTTCGACAGGACAATCTTCCTACTAATAAAGTCTTTGACATTCGACGTGATACTTAA

Protein sequence

MTRGARSVSTSTVFYPTCRHHHHSWPLPQPATGASCIGHPTPSGLPGEAANHVGICTTVLHESSSNPVSGSDLNTRVDLHKRASTPTLKSVTDPTAHMTGGYMSFLISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALARYYNSKVIVTNLRQDNLPTNKVFDIRRDT

Homology

[Close]

BLAST of Moc06g07580 vs. NCBI nr
Match: XP_022156571.1 (uncharacterized protein LOC111023448 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-08
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E   Q REPRMAKYLSQV+NQL+QFSKYEI QIPRA NV+A+ALAR
Sbjct: 717 LSDSQLIVGQVKEE-FQAREPRMAKYLSQVRNQLDQFSKYEIXQIPRAQNVBADALAR 773

[Close]

BLAST of Moc06g07580 vs. NCBI nr
Match: XP_022154103.1 (uncharacterized protein LOC111021439 [Momordica charantia])

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E   Q RE RM KYLSQV+NQL+QFSKYEIRQIPRA NVNA+ALAR
Sbjct: 173 LSDSQLIVGQVKEE-FQARESRMTKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALAR 229

[Close]

BLAST of Moc06g07580 vs. NCBI nr
Match: XP_022158579.1 (uncharacterized protein LOC111025033 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E+  Q RE RMAKYLSQV+NQL+QFSKYEIRQIP A NVNA+ LAR
Sbjct: 380 LSDSQLIVGQVKEK-FQARELRMAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLAR 436

[Close]

BLAST of Moc06g07580 vs. NCBI nr
Match: XP_022159204.1 (uncharacterized protein LOC111025623 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-07
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E   Q REPRMAKYLS+VK+QL QFSK+EIRQIP   NVNA+ALAR
Sbjct: 320 LSDSQLIVSQVKEE-FQAREPRMAKYLSRVKDQLGQFSKFEIRQIPCTQNVNADALAR 376

[Close]

BLAST of Moc06g07580 vs. NCBI nr
Match: XP_022151715.1 (uncharacterized protein LOC111019628 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-04
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 107 ISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALA 166
           I   S S+ VG ++ E   Q ++PRM KYLS+V++ L QF  YE+ Q+PR+ N NA+ALA
Sbjct: 162 IKVFSDSQLVGNQIKEE-YQTKDPRMEKYLSRVRSHLAQFETYEVSQVPRSENSNADALA 221

Query: 167 R 168
           +
Sbjct: 222 K 221

[Close]

BLAST of Moc06g07580 vs. ExPASy TrEMBL
Match: A0A6J1DVC6 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E   Q REPRMAKYLSQV+NQL+QFSKYEI QIPRA NV+A+ALAR
Sbjct: 717 LSDSQLIVGQVKEE-FQAREPRMAKYLSQVRNQLDQFSKYEIXQIPRAQNVDADALAR 773

[Close]

BLAST of Moc06g07580 vs. ExPASy TrEMBL
Match: A0A6J1DJC7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E   Q RE RM KYLSQV+NQL+QFSKYEIRQIPRA NVNA+ALAR
Sbjct: 173 LSDSQLIVGQVKEE-FQARESRMTKYLSQVRNQLDQFSKYEIRQIPRAQNVNADALAR 229

[Close]

BLAST of Moc06g07580 vs. ExPASy TrEMBL
Match: A0A6J1DZU0 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-08
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E+  Q RE RMAKYLSQV+NQL+QFSKYEIRQIP A NVNA+ LAR
Sbjct: 380 LSDSQLIVGQVKEK-FQARELRMAKYLSQVRNQLDQFSKYEIRQIPHAQNVNADVLAR 436

[Close]

BLAST of Moc06g07580 vs. ExPASy TrEMBL
Match: A0A6J1E1Q5 (uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025623 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-07
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 110 LSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALAR 168
           LS S+ +  ++ E   Q REPRMAKYLS+VK+QL QFSK+EIRQIP   NVNA+ALAR
Sbjct: 320 LSDSQLIVSQVKEE-FQAREPRMAKYLSRVKDQLGQFSKFEIRQIPCTQNVNADALAR 376

[Close]

BLAST of Moc06g07580 vs. ExPASy TrEMBL
Match: A0A6J1DBZ0 (uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019628 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-04
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 107 ISDLSGSEQVGPRLGERGVQDREPRMAKYLSQVKNQLNQFSKYEIRQIPRAHNVNANALA 166
           I   S S+ VG ++ E   Q ++PRM KYLS+V++ L QF  YE+ Q+PR+ N NA+ALA
Sbjct: 162 IKVFSDSQLVGNQIKEE-YQTKDPRMEKYLSRVRSHLAQFETYEVSQVPRSENSNADALA 221

Query: 167 R 168
           +
Sbjct: 222 K 221

The following BLAST results are available for this feature:

BLAST of Moc06g07580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156571.1	1.1e-08	67.24	uncharacterized protein LOC111023448 [Momordica charantia]	[more]
XP_022154103.1	3.1e-08	67.24	uncharacterized protein LOC111021439 [Momordica charantia]	[more]
XP_022158579.1	1.2e-07	65.52	uncharacterized protein LOC111025033 [Momordica charantia]	[more]
XP_022159204.1	4.5e-07	63.79	uncharacterized protein LOC111025623 [Momordica charantia]	[more]
XP_022151715.1	6.1e-04	47.54	uncharacterized protein LOC111019628 [Momordica charantia]	[more]

BLAST of Moc06g07580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g07580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVC6	1.2e-08	67.24	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023448 PE=4 SV=1	[more]
A0A6J1DJC7	1.5e-08	67.24	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1	[more]
A0A6J1DZU0	5.8e-08	65.52	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025033 PE=4 SV=1	[more]
A0A6J1E1Q5	2.2e-07	63.79	uncharacterized protein LOC111025623 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DBZ0	3.0e-04	47.54	uncharacterized protein LOC111019628 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of Moc06g07580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g07580.1	Moc06g07580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity