Moc06g06180 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g06180
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Serine/threonine-protein phosphatase 7 long form-like protein
Location	chr6: 4466418 .. 4466699 (+)
RNA-Seq Expression	Moc06g06180
Synteny	Moc06g06180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGACGGCTTACTCACATCTGTCTACCACGGCTGCATCGCCGCCTCCGACGCCGAGATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCCCTCCACGACCGGGGAAACAGACGCTGCTCACACGCCTTCTCCAAGCACAACTCTGTCTCGTATCCGATCAGACGGGCCTGGAGTGAAGGCAGCTTGGCCATTATGGCTTCTGCTTCTGGCATTTCTTCGCCCTCTTCTCCCACGGATCAGGTGGAAAGCCTCGTCGGATCTAACAGGAGATGA

mRNA sequence

ATGGCCGACGGCTTACTCACATCTGTCTACCACGGCTGCATCGCCGCCTCCGACGCCGAGATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCCCTCCACGACCGGGGAAACAGACGCTGCTCACACGCCTTCTCCAAGCACAACTCTGTCTCGTATCCGATCAGACGGGCCTGGAGTGAAGGCAGCTTGGCCATTATGGCTTCTGCTTCTGGCATTTCTTCGCCCTCTTCTCCCACGGATCAGGTGGAAAGCCTCGTCGGATCTAACAGGAGATGA

Coding sequence (CDS)

ATGGCCGACGGCTTACTCACATCTGTCTACCACGGCTGCATCGCCGCCTCCGACGCCGAGATCGACCGCCGCCCCTACCACAAGAACTGCGGCTGCGCCCTCCACGACCGGGGAAACAGACGCTGCTCACACGCCTTCTCCAAGCACAACTCTGTCTCGTATCCGATCAGACGGGCCTGGAGTGAAGGCAGCTTGGCCATTATGGCTTCTGCTTCTGGCATTTCTTCGCCCTCTTCTCCCACGGATCAGGTGGAAAGCCTCGTCGGATCTAACAGGAGATGA

Protein sequence

MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAWSEGSLAIMASASGISSPSSPTDQVESLVGSNRR

Homology

[Close]

BLAST of Moc06g06180 vs. NCBI nr
Match: XP_008443899.1 (PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 5.9e-29
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD  L  VYHGCIA  DA IDRRPYHKNC CALHDR NRRCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMA--SASGISSPSSPT-DQVESLVGSNRR 94
          SEG LA++A  +ASG+SSPSSP+ DQVESL GS +R
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESL-GSYKR 95

[Close]

BLAST of Moc06g06180 vs. NCBI nr
Match: KAG6587850.1 (hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.1 bits (344), Expect = 7.7e-29
Identity = 69/94 (73.40%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD L  SVYHGCIA  DAEI RRPYHKNCGCALHDR NRRCSH+ SKH++VSYPIRRAW
Sbjct: 1  MADALFGSVYHGCIATCDAEIARRPYHKNCGCALHDRDNRRCSHSMSKHSTVSYPIRRAW 60

Query: 61 SEGSLAI-MASASGISSPSSPTDQVESLVGSNRR 94
          SEG LA+  AS SGISSPSS        +GSNRR
Sbjct: 61 SEGCLAMAAASGSGISSPSSSPSMESEGLGSNRR 94

[Close]

BLAST of Moc06g06180 vs. NCBI nr
Match: KAE8653037.1 (hypothetical protein Csa_019637 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 6.5e-28
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD LL  VY+GCI + DAEIDRRPYHKNC CALHDR N+RCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMASASGISSPSSPT-DQVESL 88
          SEG LA M +ASGISSPSSP+ DQ+E +
Sbjct: 61 SEGCLA-MVAASGISSPSSPSMDQIEGV 87

[Close]

BLAST of Moc06g06180 vs. NCBI nr
Match: OMO52292.1 (hypothetical protein CCACVL1_29274 [Corchorus capsularis])

HSP 1 Score: 108.6 bits (270), Expect = 2.9e-20
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAWS 61
          ADGL  SVY GCI+ SD  I+RRPYH+NCGCALHD+    C HAF K+ +VSYP+RRAWS
Sbjct: 6  ADGLFRSVYEGCISGSDIGIERRPYHRNCGCALHDKSKGNCPHAFPKNKNVSYPLRRAWS 65

Query: 62 EGSLAIMASASGISSPSS 80
          EG LA+  ++S  SSPSS
Sbjct: 66 EGCLAMAVASSCHSSPSS 83

[Close]

BLAST of Moc06g06180 vs. NCBI nr
Match: CAB4319101.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 107.5 bits (267), Expect = 6.5e-20
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 2   ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
           ADGL   VY GCIA SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8   ADGLFRCVYEGCIAGSDVGVERRPYHRNCGCALHNKSRNKQCTHGGPKCKKVSYPMRRAW 67

Query: 62  SEGSLAIMASASGISSPSSPTDQVESLVGSNRR 94
           SEGSLA++A+AS  SSPSS   Q   +V   R+
Sbjct: 68  SEGSLALVAAASAHSSPSSSPAQHHHVVAVGRQ 100

[Close]

BLAST of Moc06g06180 vs. ExPASy TrEMBL
Match: A0A0A0LWK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD LL  VY+GCI + DAEIDRRPYHKNC CALHDR N+RCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADALLRCVYYGCIVSPDAEIDRRPYHKNCSCALHDRDNKRCSHSMSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMASASGISSPSSPT-DQVESLVGSNRR 94
          SEG LA M +ASGISSPSSP+ DQVESL GS +R
Sbjct: 61 SEGCLA-MVAASGISSPSSPSMDQVESL-GSYKR 92

[Close]

BLAST of Moc06g06180 vs. ExPASy TrEMBL
Match: A0A1S3B9X6 (uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.8e-29
Identity = 72/96 (75.00%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 1  MADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAW 60
          MAD  L  VYHGCIA  DA IDRRPYHKNC CALHDR NRRCSH+ SKH SVSYPIRRAW
Sbjct: 1  MADAFLRCVYHGCIAGPDAGIDRRPYHKNCSCALHDRDNRRCSHSLSKHKSVSYPIRRAW 60

Query: 61 SEGSLAIMA--SASGISSPSSPT-DQVESLVGSNRR 94
          SEG LA++A  +ASG+SSPSSP+ DQVESL GS +R
Sbjct: 61 SEGCLAMVAASAASGVSSPSSPSMDQVESL-GSYKR 95

[Close]

BLAST of Moc06g06180 vs. ExPASy TrEMBL
Match: A0A1R3G2H0 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29274 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNSVSYPIRRAWS 61
          ADGL  SVY GCI+ SD  I+RRPYH+NCGCALHD+    C HAF K+ +VSYP+RRAWS
Sbjct: 6  ADGLFRSVYEGCISGSDIGIERRPYHRNCGCALHDKSKGNCPHAFPKNKNVSYPLRRAWS 65

Query: 62 EGSLAIMASASGISSPSS 80
          EG LA+  ++S  SSPSS
Sbjct: 66 EGCLAMAVASSCHSSPSS 83

[Close]

BLAST of Moc06g06180 vs. ExPASy TrEMBL
Match: A0A6J5Y140 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS46277 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.1e-20
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 2   ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
           ADGL   VY GCIA SD  ++RRPYH+NCGCALH++  N++C+H   K   VSYP+RRAW
Sbjct: 8   ADGLFRCVYEGCIAGSDVGVERRPYHRNCGCALHNKSRNKQCTHGGPKCKKVSYPMRRAW 67

Query: 62  SEGSLAIMASASGISSPSSPTDQVESLVGSNRR 94
           SEGSLA++A+AS  SSPSS   Q   +V   R+
Sbjct: 68  SEGSLALVAAASAHSSPSSSPAQHHHVVAVGRQ 100

[Close]

BLAST of Moc06g06180 vs. ExPASy TrEMBL
Match: A0A6J5VM34 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46993 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-20
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 2   ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-NRRCSHAFSKHNSVSYPIRRAW 61
           ADGL   VY GCIA SD  ++RRPYH+NCGCALH +  N++C+H   K   VSYP+RRAW
Sbjct: 8   ADGLFRCVYEGCIAGSDVGVERRPYHRNCGCALHKKSRNKQCTHGGPKCKKVSYPMRRAW 67

Query: 62  SEGSLAIMASASGISSPSSPTDQVESLVGSNRR 94
           SEGSLA++A+AS  SSPSS   Q   +V   R+
Sbjct: 68  SEGSLALVAAASAHSSPSSSPAQHHHVVAVGRQ 100

[Close]

BLAST of Moc06g06180 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 3.6e-16
Identity = 43/100 (43.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 2  ADGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRG-------NRRCSHAFSKH---NS 61
          ADG+  S++ GCI+  D+ I+RRPYHKNCGCALHD+        N+R   +  +H    S
Sbjct: 3  ADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSES 62

Query: 62 VSYPIRRAWSEGSLAIMASASGISSPSSPTDQVESLVGSN 92
          +S+PIRR+WSEG++  M     + S SS +  ++SL  S+
Sbjct: 63 ISFPIRRSWSEGNIMAM----NLFSSSSSSSNLQSLSSSS 98

[Close]

BLAST of Moc06g06180 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 3  DGLLTSVYHGCIAASDAEIDRRPYHKNCGCALHDRGNRRCSHAFSKHNS---VSYPIRRA 62
          DG+  +++ GCI++ D+ I RRPYHKNCGCALH+R     S    +H     V +PI+R+
Sbjct: 7  DGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQRS 66

Query: 63 WSEG-SLAIMASASGISS 77
          WSEG SLA+  ++S  SS
Sbjct: 67 WSEGNSLALHLASSSSSS 84

The following BLAST results are available for this feature:

BLAST of Moc06g06180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443899.1	5.9e-29	75.00	PREDICTED: uncharacterized protein LOC103487382 [Cucumis melo]	[more]
KAG6587850.1	7.7e-29	73.40	hypothetical protein SDJN03_16415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653037.1	6.5e-28	75.00	hypothetical protein Csa_019637 [Cucumis sativus]	[more]
OMO52292.1	2.9e-20	64.10	hypothetical protein CCACVL1_29274 [Corchorus capsularis]	[more]
CAB4319101.1	6.5e-20	56.99	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Moc06g06180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g06180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWK0	2.8e-29	76.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265650 PE=4 SV=1	[more]
A0A1S3B9X6	2.8e-29	75.00	uncharacterized protein LOC103487382 OS=Cucumis melo OX=3656 GN=LOC103487382 PE=...	[more]
A0A1R3G2H0	1.4e-20	64.10	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29274 PE=4 ...	[more]
A0A6J5Y140	3.1e-20	56.99	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS46277 PE=...	[more]
A0A6J5VM34	5.4e-20	56.99	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS46993 PE=4 S...	[more]

BLAST of Moc06g06180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	3.6e-16	43.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	7.4e-14	47.44	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..93
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..85
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g06180.1	Moc06g06180.1	mRNA