Moc06g05740 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g05740
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	E3 ubiquitin-protein ligase MIEL1-like
Location	chr6: 4164086 .. 4164415 (+)
RNA-Seq Expression	Moc06g05740
Synteny	Moc06g05740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTAATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCACCGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGAAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCGCCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTCTGCATCGCCTTTGCGTCTGTTTTGTTATTGTGA

mRNA sequence

ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTAATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCACCGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGAAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCGCCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTCTGCATCGCCTTTGCGTCTGTTTTGTTATTGTGA

Coding sequence (CDS)

ATGGCTGCAGTTAAACCCTTCGTTTCGATAGCCCTAATTGCTCTTCTCTTGTTTTCTGAATCCCTCGCTGTTTCGTCCGCTGACTACGGCCCGGATTCGAATTCCTTCACCGGAATACTCCGCCGGAATCTGCTCCACCCATCGGGGCGTCGGCGGGAAGATAATAGCGTCGGCTCCAATTTGGCCGAGAAGATCAGTATCAAAAGGGGGGTTCGATCCGCCGTAATTGCTGGTCGTGCCAGTGGATCGCCGTCCAGCCGGGCACCGCCCTTTCATTTTGGGTCTCTGCTCTGTTTCTGCATCGCCTTTGCGTCTGTTTTGTTATTGTGA

Protein sequence

MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSNLAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCFCIAFASVLLL

Homology

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BLAST of Moc06g05740 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.0 bits (284), Expect = 8.1e-22
Identity = 65/108 (60.19%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
           MA +K    I LI LLL SES  VSSADY  D  S TGIL RN+LHP   +R D   GS+
Sbjct: 1   MAPIKRLFPITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGSS 60

Query: 61  LAEKISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLLCFCIAFASVLL 109
           LAEKISIKRG RSAVI G +S S SSR PPF+  S++CF  AFA  LL
Sbjct: 61  LAEKISIKRGARSAVIGGHSSISSSSRVPPFNIASVICFVFAFAFALL 108

[Close]

BLAST of Moc06g05740 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 9.3e-10
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 1  MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
          MAA+K  VS+AL+ALLLFSESL  S+ D   DSNS TG+LRRN+L  +  +  DNSV S+
Sbjct: 1  MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61 LAEK--ISIKRGVRSAVIAGRASGSPSSRAPPFHFGSLL 98
             K  + IKR +R      R+S +  SR      GS+L
Sbjct: 61 PERKMNVHIKRRMRPVATGTRSSAANRSRIASIGVGSVL 99

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BLAST of Moc06g05740 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 2   AAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGS 61
           AA+  F + IALI+LLLFSESL A+SS+D+  DSN                R  D   G+
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN----------------RPGDKDSGT 62

Query: 62  NLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSLLCFCIAFASVLLL 110
           +L EKISIKRGVRS VIAGR++ S S+R      F+ GS++CF IAF   + L
Sbjct: 63  SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

[Close]

BLAST of Moc06g05740 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MAAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVG 60
           MAA+  F + +ALI+LLLFSESL A+SS D+G +SN                RR D    
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN----------------RRGDKGSD 60

Query: 61  SNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSLLCFCIAFASVLLL 110
           ++LA KI  KRGVRS V AGR++ S S++     F+ GSL+CF IAF   + L
Sbjct: 61  TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

[Close]

BLAST of Moc06g05740 vs. NCBI nr
Match: KAG6575858.1 (hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-EDNSVGS 60
           MA +K  +SIAL+ALLL SE L +S+AD+G   +   G+ RR+ L  + R +  +N +G 
Sbjct: 1   MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLAGVFRRDTLQTAERHQVAENGIGY 60

Query: 61  NLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFGSLLCFC 101
             + +  I+R  R AV   RA G SPS    SR   F  GSLLC C
Sbjct: 61  QYSFEQKIRRRARRAV--RRAEGPSPSSANWSRTSSFGIGSLLCLC 104

[Close]

BLAST of Moc06g05740 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.5e-09
Identity = 54/113 (47.79%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 2   AAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGS 61
           AA+  F + IALI+LLLFSESL A+SS+D+  DSN                R  D   G+
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDSN----------------RPGDKDSGT 62

Query: 62  NLAEKISIKRGVRSAVIAGRASGSPSSRAPP---FHFGSLLCFCIAFASVLLL 110
           +L EKISIKRGVRS VIAGR++ S S+R      F+ GS++CF IAF   + L
Sbjct: 63  SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

[Close]

BLAST of Moc06g05740 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 1   MAAVKPF-VSIALIALLLFSESL-AVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVG 60
           MAA+  F + +ALI+LLLFSESL A+SS D+G +SN                RR D    
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNSN----------------RRGDKGSD 60

Query: 61  SNLAEKISIKRGVRSAVIAGRASGSPSSRAPP--FHFGSLLCFCIAFASVLLL 110
           ++LA KI  KRGVRS V AGR++ S S++     F+ GSL+CF IAF   + L
Sbjct: 61  TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

[Close]

BLAST of Moc06g05740 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-EDNSVGS 60
           MA +K  +SIAL+ALLL  E L +S+AD+G   +   G+ R + L  + R +  +N +G+
Sbjct: 63  MAPIKSLISIALLALLLLFERLPISAADHGVAPSPLAGVFRLDTLQTAERHQVAENGIGN 122

Query: 61  NLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFGSLLCFCIAFASVL 108
             + +  I+R  R AV   RA G SPS    SR   F  GSLLC C  F   L
Sbjct: 123 QYSFEQKIRRRARRAV--RRAEGPSPSSANWSRTSSFGVGSLLCLCTVFGLFL 173

[Close]

BLAST of Moc06g05740 vs. ExPASy TrEMBL
Match: A0A5D3D3Y6 (E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001920 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 45/111 (40.54%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRREDNSVGSN 60
           MAA++P VSIAL+ALL FSESL          S+S TGI  RN+LH    R  + SV S+
Sbjct: 1   MAAIRPLVSIALLALLFFSESLLT--------SHSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61  LAEK-----ISIKRGVRSAVIAG-----RASGSPSSRAPPFHFGSLLCFCI 102
              K        +R +R  +I+G       S    SR   F  GS+LC CI
Sbjct: 61  YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVASFEVGSMLCICI 103

[Close]

BLAST of Moc06g05740 vs. ExPASy TrEMBL
Match: A0A6J1GRX2 (uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC111456466 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 1   MAAVKPFVSIALIALLLFSESLAVSSADYGPDSNSFTGILRRNLLHPSGRRR-EDNSVGS 60
           MA +K  +SIAL+ALLL SE L +S+AD+G   +    + RR+ L  + R +  +N +G 
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPISAADHGVAPSPLARVFRRDTLQTAERHQVAENGIGY 149

Query: 61  NLAEKISIKRGVRSAVIAGRASG-SPS----SRAPPFHFGSLLCFCIAFASVL 108
             + +  I+R  R AV   RA G SPS    S+   F  GSLLC C  F   L
Sbjct: 150 QYSFEQKIRRRARRAV--RRAEGPSPSSANWSQTSSFGVGSLLCLCTVFGLFL 200

The following BLAST results are available for this feature:

BLAST of Moc06g05740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587814.1	8.1e-22	60.19	hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575859.1	9.3e-10	47.47	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65176.1	1.3e-08	47.79	hypothetical protein Csa_019975 [Cucumis sativus]	[more]
KAA0035100.1	4.3e-07	45.13	hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597...	[more]
KAG6575858.1	2.1e-06	42.45	hypothetical protein SDJN03_26497, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Moc06g05740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g05740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYV9	6.5e-09	47.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1	[more]
A0A5D3BCG4	2.1e-07	45.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JZB1	6.7e-06	39.82	uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3D3Y6	1.2e-05	40.54	E3 ubiquitin-protein ligase MIEL1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1GRX2	1.2e-05	39.82	uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]

BLAST of Moc06g05740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g05740.1	Moc06g05740.1	mRNA