Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACAAATTTGCCGTTTGTTGATGGTGGTTCGGAATATCAAAACATGCTGGATGAAATTGCGCTTTACTTGCTCAACGACAATCAATCATCAGCAGCTTCTGATGAGGTAAAACTTATTTCGAGAGTCGATTCTCTCTGTTGCCTTTTGAAAGAACCTGCTGCAGTTCAAAGTTTTCAAACCAGTAGCAAAAGCTGTGTCGGAGGACCCGACCACAAAGAAGATGTTCAGCTTAAGAATGCTGCGGAGTTGAGGGATGACAAAAATATGGGAGGCCATATCAAGGTTCATCTTCACCCTGAGGAGGAAACAAAGGATGTCTCTGTAAGCAAACAAACACCAGCAGCTATATCAAGGAAAGATTCATTTGGGGATTTGCTGTTGCATCTTCCTCGAATTATGTCGCTCCCGAAGTTCTTGTTTAACATTTCAGATGGTGATGAAGGTCAAGATTAA
mRNA sequence
ATGGCTTCCACAAATTTGCCGTTTGTTGATGGTGGTTCGGAATATCAAAACATGCTGGATGAAATTGCGCTTTACTTGCTCAACGACAATCAATCATCAGCAGCTTCTGATGAGGTAAAACTTATTTCGAGAGTCGATTCTCTCTGTTGCCTTTTGAAAGAACCTGCTGCAGTTCAAAGTTTTCAAACCAGTAGCAAAAGCTGTGTCGGAGGACCCGACCACAAAGAAGATGTTCAGCTTAAGAATGCTGCGGAGTTGAGGGATGACAAAAATATGGGAGGCCATATCAAGGTTCATCTTCACCCTGAGGAGGAAACAAAGGATGTCTCTGTAAGCAAACAAACACCAGCAGCTATATCAAGGAAAGATTCATTTGGGGATTTGCTGTTGCATCTTCCTCGAATTATGTCGCTCCCGAAGTTCTTGTTTAACATTTCAGATGGTGATGAAGGTCAAGATTAA
Coding sequence (CDS)
ATGGCTTCCACAAATTTGCCGTTTGTTGATGGTGGTTCGGAATATCAAAACATGCTGGATGAAATTGCGCTTTACTTGCTCAACGACAATCAATCATCAGCAGCTTCTGATGAGGTAAAACTTATTTCGAGAGTCGATTCTCTCTGTTGCCTTTTGAAAGAACCTGCTGCAGTTCAAAGTTTTCAAACCAGTAGCAAAAGCTGTGTCGGAGGACCCGACCACAAAGAAGATGTTCAGCTTAAGAATGCTGCGGAGTTGAGGGATGACAAAAATATGGGAGGCCATATCAAGGTTCATCTTCACCCTGAGGAGGAAACAAAGGATGTCTCTGTAAGCAAACAAACACCAGCAGCTATATCAAGGAAAGATTCATTTGGGGATTTGCTGTTGCATCTTCCTCGAATTATGTCGCTCCCGAAGTTCTTGTTTAACATTTCAGATGGTGATGAAGGTCAAGATTAA
Protein sequence
MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLLKEPAAVQSFQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAISRKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD
Homology
BLAST of Moc06g05640 vs. NCBI nr
Match:
XP_022135007.1 (uncharacterized protein LOC111007116 isoform X1 [Momordica charantia])
HSP 1 Score: 305.1 bits (780), Expect = 3.5e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
Query: 1 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLLKEPAAVQS 60
MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKL SRVDSLCCLLKEPAAVQS
Sbjct: 372 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLXSRVDSLCCLLKEPAAVQS 431
Query: 61 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 120
FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS
Sbjct: 432 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 491
Query: 121 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD
Sbjct: 492 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 524
BLAST of Moc06g05640 vs. NCBI nr
Match:
XP_022135008.1 (uncharacterized protein LOC111007116 isoform X2 [Momordica charantia])
HSP 1 Score: 305.1 bits (780), Expect = 3.5e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
Query: 1 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLLKEPAAVQS 60
MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKL SRVDSLCCLLKEPAAVQS
Sbjct: 280 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLXSRVDSLCCLLKEPAAVQS 339
Query: 61 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 120
FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS
Sbjct: 340 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 399
Query: 121 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD
Sbjct: 400 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 432
BLAST of Moc06g05640 vs. NCBI nr
Match:
XP_023531151.1 (uncharacterized protein LOC111793479 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 103/154 (66.88%), Postives = 117/154 (75.97%), Query Frame = 0
Query: 1 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLL-KEPAAVQ 60
M T PFVD GSE Q ML+EI YLL+DNQ +AASDE L+SRVDSLCCLL KEP AVQ
Sbjct: 335 MTFTESPFVDDGSECQEMLNEITRYLLSDNQLTAASDEASLMSRVDSLCCLLQKEPPAVQ 394
Query: 61 SFQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAI 120
SF T+ V G +KEDVQLK+A ELRD +N HIK+H +ETKDVS S Q P+A+
Sbjct: 395 SFPTNG---VEGLGYKEDVQLKDAGELRDGRNSESHIKIH---PKETKDVSGSMQ-PSAM 454
Query: 121 SRKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
SRKDSF DLLLHLPRI SLPKFL+NISDGDE +D
Sbjct: 455 SRKDSFADLLLHLPRIASLPKFLYNISDGDEDED 481
BLAST of Moc06g05640 vs. NCBI nr
Match:
XP_038879516.1 (uncharacterized protein LOC120071357 isoform X2 [Benincasa hispida])
HSP 1 Score: 175.3 bits (443), Expect = 4.2e-40
Identity = 102/155 (65.81%), Postives = 121/155 (78.06%), Query Frame = 0
Query: 1 MASTNLPFVDGGS-EYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLL-KEPAAV 60
MAST PFVD GS EYQ+MLD+IA YLL+DNQ SAASDEV L+SRVDSLCCLL KEP V
Sbjct: 392 MASTKTPFVDNGSEEYQSMLDDIAQYLLSDNQLSAASDEVSLMSRVDSLCCLLQKEP--V 451
Query: 61 QSFQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAA 120
QS QT+ ++CV G ++++DV A LRD KN+ HIK+H E T++VS S Q +A
Sbjct: 452 QSSQTNGENCVEGANYRDDV-----AMLRDGKNIEDHIKIH---PETTQEVSGSIQA-SA 511
Query: 121 ISRKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
+SRKDS+GDLLLHLPRI SLPK LF+ISDGDEGQD
Sbjct: 512 MSRKDSYGDLLLHLPRIASLPKLLFDISDGDEGQD 535
BLAST of Moc06g05640 vs. NCBI nr
Match:
XP_038879515.1 (uncharacterized protein LOC120071357 isoform X1 [Benincasa hispida])
HSP 1 Score: 175.3 bits (443), Expect = 4.2e-40
Identity = 102/155 (65.81%), Postives = 121/155 (78.06%), Query Frame = 0
Query: 1 MASTNLPFVDGGS-EYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLL-KEPAAV 60
MAST PFVD GS EYQ+MLD+IA YLL+DNQ SAASDEV L+SRVDSLCCLL KEP V
Sbjct: 405 MASTKTPFVDNGSEEYQSMLDDIAQYLLSDNQLSAASDEVSLMSRVDSLCCLLQKEP--V 464
Query: 61 QSFQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAA 120
QS QT+ ++CV G ++++DV A LRD KN+ HIK+H E T++VS S Q +A
Sbjct: 465 QSSQTNGENCVEGANYRDDV-----AMLRDGKNIEDHIKIH---PETTQEVSGSIQA-SA 524
Query: 121 ISRKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
+SRKDS+GDLLLHLPRI SLPK LF+ISDGDEGQD
Sbjct: 525 MSRKDSYGDLLLHLPRIASLPKLLFDISDGDEGQD 548
BLAST of Moc06g05640 vs. ExPASy TrEMBL
Match:
A0A6J1C1F5 (uncharacterized protein LOC111007116 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007116 PE=4 SV=1)
HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
Query: 1 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLLKEPAAVQS 60
MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKL SRVDSLCCLLKEPAAVQS
Sbjct: 372 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLXSRVDSLCCLLKEPAAVQS 431
Query: 61 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 120
FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS
Sbjct: 432 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 491
Query: 121 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD
Sbjct: 492 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 524
BLAST of Moc06g05640 vs. ExPASy TrEMBL
Match:
A0A6J1C3L2 (uncharacterized protein LOC111007116 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007116 PE=4 SV=1)
HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0
Query: 1 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLLKEPAAVQS 60
MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKL SRVDSLCCLLKEPAAVQS
Sbjct: 280 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLXSRVDSLCCLLKEPAAVQS 339
Query: 61 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 120
FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS
Sbjct: 340 FQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAIS 399
Query: 121 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD
Sbjct: 400 RKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 432
BLAST of Moc06g05640 vs. ExPASy TrEMBL
Match:
A0A6J1EYX6 (uncharacterized protein LOC111440825 OS=Cucurbita moschata OX=3662 GN=LOC111440825 PE=4 SV=1)
HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 101/151 (66.89%), Postives = 111/151 (73.51%), Query Frame = 0
Query: 4 TNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLL-KEPAAVQSFQ 63
T PFVD GSE Q ML+EI YLL+DNQ SAASDE L+SRVDSLCCLL KEP VQSF
Sbjct: 338 TKSPFVDDGSECQEMLNEITRYLLSDNQLSAASDEASLMSRVDSLCCLLQKEPPVVQSFP 397
Query: 64 TSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAISRK 123
TS V G D+KEDVQ LRD +N HIK+H +ETKDVS S Q P+A+SRK
Sbjct: 398 TSG---VEGLDYKEDVQ------LRDGRNSESHIKIH---PKETKDVSGSMQ-PSAMSRK 457
Query: 124 DSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
DSF DLLLHLPRI SLPKFLFNISDGDE +D
Sbjct: 458 DSFADLLLHLPRIASLPKFLFNISDGDEDED 475
BLAST of Moc06g05640 vs. ExPASy TrEMBL
Match:
A0A6J1KT49 (uncharacterized protein LOC111497989 OS=Cucurbita maxima OX=3661 GN=LOC111497989 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 1.7e-39
Identity = 100/154 (64.94%), Postives = 112/154 (72.73%), Query Frame = 0
Query: 1 MASTNLPFVDGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLL-KEPAAVQ 60
M T PF D GSE Q ML+EI YLL+DNQ SAASDE L+SRVDSLCCLL KEP AVQ
Sbjct: 335 MTFTKSPFADDGSECQEMLNEITRYLLSDNQLSAASDEASLMSRVDSLCCLLQKEPPAVQ 394
Query: 61 SFQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAI 120
SF TS V G D+KED+Q LRD +N HIK+H +ETKDVS S Q P+A+
Sbjct: 395 SFPTSG---VEGLDYKEDIQ------LRDGRNSESHIKIH---PKETKDVSGSIQ-PSAM 454
Query: 121 SRKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
SRKDSF DL+LHLPRI SLPKFLFNISDGDE +D
Sbjct: 455 SRKDSFADLMLHLPRIASLPKFLFNISDGDEDED 475
BLAST of Moc06g05640 vs. ExPASy TrEMBL
Match:
A0A6J1JMN7 (uncharacterized protein LOC111485770 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485770 PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 5.5e-38
Identity = 99/156 (63.46%), Postives = 120/156 (76.92%), Query Frame = 0
Query: 1 MASTNLPFVDGGS-EYQNMLDEIALYLLNDNQ-SSAASDEVKLISRVDSLCCLL-KEPAA 60
MAST PFVD GS EYQ+ML+EIA YLL+D+Q SSAA EV ++SRV+SLCCLL KEPAA
Sbjct: 382 MASTKTPFVDDGSEEYQSMLNEIAHYLLSDDQLSSAAPAEVSVMSRVNSLCCLLQKEPAA 441
Query: 61 VQSFQTSSKSCVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPA 120
VQS QTS ++CV +H+E+V+LK+A E RD + G HI +H E K+V S Q +
Sbjct: 442 VQSSQTSGENCV--DNHEEEVRLKDATEWRDGWDTGDHINIH---PEVNKNVPGSIQA-S 501
Query: 121 AISRKDSFGDLLLHLPRIMSLPKFLFNISDGDEGQD 154
A+SRKDSFGDL LHLPRI SLPKF F+IS+GDEGQD
Sbjct: 502 AMSRKDSFGDLFLHLPRIASLPKFFFDISNGDEGQD 531
BLAST of Moc06g05640 vs. TAIR 10
Match:
AT2G24100.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )
HSP 1 Score: 72.4 bits (176), Expect = 3.5e-13
Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 0
Query: 10 DGGSEYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLLKEPAAVQ-SFQTSSKSC 69
D E +E+ LL+DN + SDE ++S+V+S C LL+ A Q + +T+
Sbjct: 347 DQACENNQEFEEMKQLLLSDNTQTDPSDEKSVMSKVNSFCNLLQSAANSQLNIETADTER 406
Query: 70 VGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAISRKDSFGDL 129
V G D+ + GG + D + S + +SRKDSF DL
Sbjct: 407 VVGVDNNRHMP------------EGG---------KRVVDPASSSKPLQGMSRKDSFSDL 466
Query: 130 LLHLPRIMSLPKFLFNISDGD 150
L+HLPRI SLPKFLFNIS+ D
Sbjct: 467 LVHLPRITSLPKFLFNISEED 466
BLAST of Moc06g05640 vs. TAIR 10
Match:
AT4G30780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). )
HSP 1 Score: 67.8 bits (164), Expect = 8.7e-12
Identity = 52/142 (36.62%), Postives = 71/142 (50.00%), Query Frame = 0
Query: 11 GGS--EYQNMLDEIALYLLNDNQSSAASDEVKLISRVDSLCCLL-KEPAAVQSFQTSSKS 70
GGS E+ + + LL+DN A DE L+ RV+SL LL K+P + Q +++
Sbjct: 457 GGSHPEHMEKFEIMKQQLLSDNIQFEAPDEKSLMPRVNSLFNLLYKDPNVAANSQLNTEM 516
Query: 71 CVGGPDHKEDVQLKNAAELRDDKNMGGHIKVHLHPEEETKDVSVSKQTPAAISRKDSFGD 130
VG + + + D+ N + L + S P + RKDSF D
Sbjct: 517 SVGLKSEPKGI-------VSDNNNNNNNNNRVLD--------TASSSKPQGMLRKDSFSD 576
Query: 131 LLLHLPRIMSLPKFLFNISDGD 150
LLLHLPRI SLPKFL NIS+ D
Sbjct: 577 LLLHLPRITSLPKFLSNISEED 583
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022135007.1 | 3.5e-79 | 99.35 | uncharacterized protein LOC111007116 isoform X1 [Momordica charantia] | [more] |
| XP_022135008.1 | 3.5e-79 | 99.35 | uncharacterized protein LOC111007116 isoform X2 [Momordica charantia] | [more] |
| XP_023531151.1 | 1.5e-42 | 66.88 | uncharacterized protein LOC111793479 [Cucurbita pepo subsp. pepo] | [more] |
| XP_038879516.1 | 4.2e-40 | 65.81 | uncharacterized protein LOC120071357 isoform X2 [Benincasa hispida] | [more] |
| XP_038879515.1 | 4.2e-40 | 65.81 | uncharacterized protein LOC120071357 isoform X1 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1C1F5 | 1.7e-79 | 99.35 | uncharacterized protein LOC111007116 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1C3L2 | 1.7e-79 | 99.35 | uncharacterized protein LOC111007116 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
| A0A6J1EYX6 | 1.3e-39 | 66.89 | uncharacterized protein LOC111440825 OS=Cucurbita moschata OX=3662 GN=LOC1114408... | [more] |
| A0A6J1KT49 | 1.7e-39 | 64.94 | uncharacterized protein LOC111497989 OS=Cucurbita maxima OX=3661 GN=LOC111497989... | [more] |
| A0A6J1JMN7 | 5.5e-38 | 63.46 | uncharacterized protein LOC111485770 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G24100.1 | 3.5e-13 | 36.17 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
| AT4G30780.1 | 8.7e-12 | 36.62 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
