Moc06g05220 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g05220
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Small nuclear ribonucleoprotein E
Location	chr6: 3783866 .. 3786507 (-)
RNA-Seq Expression	Moc06g05220
Synteny	Moc06g05220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGAATTTGTTTGTGGCATTATCTTGGAAGTGAGAAAATGTGGTTTTCTCATTCCATTGTTTTTTTTTTTTTGTAATTAGTGTGTTTCTTTTGGCTGACTAATTAATTGTTATGATTAAACTTATAAGGGAGGTAGTTGGAGGAATCTGTTTCTTTTAACACGGTGTTATCTTCAAATTAATATTATTTCTTGACCGTACAGGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGTATGCCTTCTTCCCCCCTCCTTTGCTGTTGTCTGCCTCATCTCTACTTCAATAACAATATCTGAAATGCCTTTTTTTTCTCCTTCAGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACGTAAGTGAAATTGAACTTGCGCTCTCTATTTCCCTTGCACCAGCTAACTTTCTTTTCAAAATTTCAGGGGAAAATGATGATCATCCAGCAAAACACATTATTTAGATAGAGTTGGCACTTCCATTGTATGGGACTATAGCTTTTTACTAGTTACGTTTGATTGAAGTTGTATCCTTCTACGTTTTAGGCCGTGGATGATACTTAACTACTTGATATTTGGATGTGAAGTGCCATATTATTGTTGGTAGGTATTATCCTTTTATGTGATATTCGTTTTAATTCATCGTCCTTCCTATAATTGAGTTGTTTGCACCAACAAATTCTTTCAAACTATGCAATTTGGTTTGTTGAATAGTAAACTATAACTATAAGTGGTGGTGTACTGGTGGAGCGTTGTTTGAGAACGGCTGGTTACTTCGAGAGGATATTTGTTTCCCTGAATTTGTTTTACTTCCACTGGGCCTCAATTGATTGTCTTCGTCCCGGAGAAAACAGCATCATCTTCCCAATCCCGTGTATGATTGACTACCAAGTTATGGATGATGGTGCGGCTAAATATTTATTTTTAGAGGATCTATTAAGAATCTCTTTAGTATATTTTGCACAACTTTGGTCATAGACTATTGCTTTGGGTATGTAGGCTTTAGGCTTAAAAATCAGCCCAAGCTCTTCAGCAGTACGAGTACTGAAGTTCAAACCATTGTCCAGGATAAAAAGCCTCATGAAAAAGGCCCATAGGTACTGTTTTGTGTGGGGTGCTAAATTATTCCCCTTTTGATAATATGAGCAATAAATCCAATGCACTGCTGTTTGTTCTGCTTTTATCGTTTCTTCATTATGTAGGAGCAGGTAAGAGAGTCACCCATTTGCAGCTTTTTTAGTGATAAAAGCATGTCTGAGCGCCAGGGTGTGGGAAAAGATTGGACTAACGAAGTGAAATAGAAATTTGGAGATAGCCCAAAGTGAGAGTGGGGGTGGCCGGTGGGTCACTTATGGGGTCAGGGAATCACACCCCAACCCTTGTCCTCAGCTAGCAACTCGAGTTGTAAGAAACAAGTGCGCTATCGCATTTGTTCTTTTATATTTATTGGTGACTGACTCATCCTCCACACATATTGATATCATATCTCTCCCTCTCTCCTCCTTGGTGCAATTCGCCACTCCACTCCATTCTTGTTTTTTTTTTAACCCCACCTTGTTTGGTGCTTTCTGTGCAACATTCCATAACCCCTGATATCCTTCTCTCTTATGATTGGAGAAATGCATGACTGTTTTAGAGTGGTTGACACAACATACAAACATCATTATTATTTTATATATCCGTCTCTTGTTATTAGAATTGGTTGATTAACTTTATTTTTGGACCTCCTAGCAGGCCATTGTTGATTGTATTATGTGGCCCTTGGTGATAGTAATTGCTCATGACAGACTGAATATATATATGATTCTGTAACCCGCCCGATTCTTCAGGTAGCCTCTCTGTCTCTGATGCTCTTTGCCCATGTGAGTTTGGGGTATACTTTCAACAGAATGGGGTCTCAAATAGTACACCAACAGAAAGAAAAAAGTAAAATGACCCCTTAACTTTTGGGTGACATACCTTTGTTTTGATGGTACAATACGAACTGAGGGATGGGTTGATTGTGATATTTCAGGAAGCACAGGACGCTCACAAAAATGTTCAATAGTGCATTCTATTCACACCTGGAGGATTCTGATGCTTTGTTTCAATCTTCATGTAGCCAGAAGGCTAAGGTTTGTGGTTGTTGCTTAGGTCGGAGAACCGCAAAGTGGTTTAATACAAATTTATTGAGTCAATAATTCAAGCTGAATTAGGCGATTACATTCGTCAGTAGAGAAATGTATGCTTGACATTTTTTAAGGCCACATATCCATAAAGACAGCGGATAACTTCACTCTGACCAAGATTTGAAGATGAAATTTTTTATGAAGTCGGGAACATGGTACTATCATGAATACATGAATAAAGGCATTTATATACAAAAAGGATTAGAGGAAAAAAAAAACTGAAACATGATGATCAAAACTGTAGCAGTAAAACTTAAGAATGGTACAACTATCATTGAACTTGTCCTTGAATAGGTAGAAGAGCAAACAGTAGCGAGGACGATAATATACAAATTCACTATTATGCATGGTCAAACTCAAACATATGATCCATTACCTTATCATCGGCAAAGGAATCAACCATCCGCCGCGTGA

mRNA sequence

ATGCAGGAATTTGTTTGTGGCATTATCTTGGAAGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACTGGTGGTGTACTGGTGGAGCGTTGTTTGAGAACGGCTGGTTACTTCGAGAGGATATTTGTTTCCCTGAATTTGTTTTACTTCCACTGGGCCTCAATTGATTGTCTTCGTCCCGGAGAAAACAGCATCATCTTCCCAATCCCGTGTATGATTGACTACCAAGTTATGGATGATGGCTTAAAAATCAGCCCAAGCTCTTCAGCAGTACGAGTACTGAAGTTCAAACCATTGTCCAGGATAAAAAGCCTCATGAAAAAGGCCCATAGGAGCAGGAAGCACAGGACGCTCACAAAAATGTTCAATAGTGCATTCTATTCACACCTGGAGGATTCTGATGCTTTGTTTCAATCTTCATGTAGCCAGAAGGCTAAGGTAGAAGAGCAAACAGTAGCGAGGACGATAATATACAAATTCACTATTATGCATGGTCAAACTCAAACATATGATCCATTACCTTATCATCGGCAAAGGAATCAACCATCCGCCGCGTGA

Coding sequence (CDS)

ATGCAGGAATTTGTTTGTGGCATTATCTTGGAAGGATTTGATGAGTACATGAATTTAGTTCTGGATGATGCTGAGGAAGTCAATATTAAGAAAAAGAGTAAAAAGACACTTGGGAGGATTCTCCTCAAAGGAGACAATATTACGTTAATGATGAACACTGGTGGTGTACTGGTGGAGCGTTGTTTGAGAACGGCTGGTTACTTCGAGAGGATATTTGTTTCCCTGAATTTGTTTTACTTCCACTGGGCCTCAATTGATTGTCTTCGTCCCGGAGAAAACAGCATCATCTTCCCAATCCCGTGTATGATTGACTACCAAGTTATGGATGATGGCTTAAAAATCAGCCCAAGCTCTTCAGCAGTACGAGTACTGAAGTTCAAACCATTGTCCAGGATAAAAAGCCTCATGAAAAAGGCCCATAGGAGCAGGAAGCACAGGACGCTCACAAAAATGTTCAATAGTGCATTCTATTCACACCTGGAGGATTCTGATGCTTTGTTTCAATCTTCATGTAGCCAGAAGGCTAAGGTAGAAGAGCAAACAGTAGCGAGGACGATAATATACAAATTCACTATTATGCATGGTCAAACTCAAACATATGATCCATTACCTTATCATCGGCAAAGGAATCAACCATCCGCCGCGTGA

Protein sequence

MQEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGGVLVERCLRTAGYFERIFVSLNLFYFHWASIDCLRPGENSIIFPIPCMIDYQVMDDGLKISPSSSAVRVLKFKPLSRIKSLMKKAHRSRKHRTLTKMFNSAFYSHLEDSDALFQSSCSQKAKVEEQTVARTIIYKFTIMHGQTQTYDPLPYHRQRNQPSAA

Homology

[Close]

BLAST of Moc06g05220 vs. NCBI nr
Match: KAB5514425.1 (hypothetical protein DKX38_028331 [Salix brachista])

HSP 1 Score: 91.7 bits (226), Expect = 8.5e-15
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 2   QEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGG 56
           + F C    +GFDEYMNLVLDDAEEVNIKKKSKK+LGRILLKGDNITLMMNTGG
Sbjct: 113 ESFQCFYGWQGFDEYMNLVLDDAEEVNIKKKSKKSLGRILLKGDNITLMMNTGG 166

[Close]

BLAST of Moc06g05220 vs. NCBI nr
Match: XP_027332277.1 (small nuclear ribonucleoprotein E-like isoform X1 [Abrus precatorius])

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-14
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 7  GIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          G I++GFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNTG
Sbjct: 41 GRIIQGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTG 88

[Close]

BLAST of Moc06g05220 vs. NCBI nr
Match: MCI19947.1 (small nuclear ribonucleoprotein E-like [Trifolium medium])

HSP 1 Score: 88.2 bits (217), Expect = 9.4e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 11 EGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          +GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNTG
Sbjct: 1  QGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTG 44

[Close]

BLAST of Moc06g05220 vs. NCBI nr
Match: XP_020227736.1 (small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 87

[Close]

BLAST of Moc06g05220 vs. NCBI nr
Match: XP_022135003.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972120.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023529379.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6587777.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-13
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 87

[Close]

BLAST of Moc06g05220 vs. ExPASy Swiss-Prot
Match: Q7ZUG0 (Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.7e-10
Identity = 31/41 (75.61%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 53
          GFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQS 89

[Close]

BLAST of Moc06g05220 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 53
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Moc06g05220 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 53
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Moc06g05220 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 53
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Moc06g05220 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.3e-10
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN 53
          GFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of Moc06g05220 vs. ExPASy TrEMBL
Match: A0A5N5JA39 (Small nuclear ribonucleoprotein E OS=Salix brachista OX=2182728 GN=DKX38_028331 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.1e-15
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 2   QEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTGG 56
           + F C    +GFDEYMNLVLDDAEEVNIKKKSKK+LGRILLKGDNITLMMNTGG
Sbjct: 113 ESFQCFYGWQGFDEYMNLVLDDAEEVNIKKKSKKSLGRILLKGDNITLMMNTGG 166

[Close]

BLAST of Moc06g05220 vs. ExPASy TrEMBL
Match: A0A2N9ELL8 (Sm protein E OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3557 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.2e-15
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 1  MQEFVCGIILEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          M   VC +IL GFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNTG
Sbjct: 1  MHRGVC-LILAGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNTG 53

[Close]

BLAST of Moc06g05220 vs. ExPASy TrEMBL
Match: A0A392Q7T6 (Sm protein E (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-14
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0


Query: 11 EGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          +GFDEYMNLVLDDAEEVN+KKKSKKTLGRILLKGDNITLMMNTG
Sbjct: 1  QGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMNTG 44

[Close]

BLAST of Moc06g05220 vs. ExPASy TrEMBL
Match: A0A6J1I7N4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 87

[Close]

BLAST of Moc06g05220 vs. ExPASy TrEMBL
Match: A0A6J1C3K6 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.0e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 12 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG
Sbjct: 45 GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 87

[Close]

BLAST of Moc06g05220 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 78.2 bits (191), Expect = 9.1e-15
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 10 LEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          + GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNTG
Sbjct: 43 ITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLMMNTG 87

[Close]

BLAST of Moc06g05220 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 78.2 bits (191), Expect = 9.1e-15
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0


Query: 10 LEGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTG 55
          + GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN G
Sbjct: 43 ITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLMMNAG 87

[Close]

BLAST of Moc06g05220 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 10 LEGFDEYMNLVLDDAEEVNIKKKSKKTLG 39
          + GFDEYMNLVLD+AEEV+IKK ++K LG
Sbjct: 43 ITGFDEYMNLVLDEAEEVSIKKNTRKPLG 71

The following BLAST results are available for this feature:

BLAST of Moc06g05220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5514425.1	8.5e-15	83.33	hypothetical protein DKX38_028331 [Salix brachista]	[more]
XP_027332277.1	1.9e-14	89.58	small nuclear ribonucleoprotein E-like isoform X1 [Abrus precatorius]	[more]
MCI19947.1	9.4e-14	95.45	small nuclear ribonucleoprotein E-like [Trifolium medium]	[more]
XP_020227736.1	1.2e-13	100.00	small nuclear ribonucleoprotein E [Cajanus cajan]	[more]
XP_022135003.1	1.2e-13	100.00	small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 sma...	[more]

BLAST of Moc06g05220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZUG0	1.7e-10	75.61	Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1	[more]
A4FUI2	2.3e-10	75.61	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	2.3e-10	75.61	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	2.3e-10	75.61	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	2.3e-10	75.61	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]

BLAST of Moc06g05220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5JA39	4.1e-15	83.33	Small nuclear ribonucleoprotein E OS=Salix brachista OX=2182728 GN=DKX38_028331 ...	[more]
A0A2N9ELL8	9.2e-15	85.19	Sm protein E OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3557 PE=3 SV=1	[more]
A0A392Q7T6	4.6e-14	95.45	Sm protein E (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1	[more]
A0A6J1I7N4	6.0e-14	100.00	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE...	[more]
A0A6J1C3K6	6.0e-14	100.00	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114...	[more]

BLAST of Moc06g05220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18740.1	9.1e-15	82.22	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	9.1e-15	82.22	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	1.7e-05	72.41	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..52 e-value: 0.0057 score: 23.7
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 9..50 e-value: 6.2E-13 score: 48.2
None	No IPR available	GENE3D	2.30.30.100		coord: 4..53 e-value: 6.8E-18 score: 66.3
None	No IPR available	PANTHER	PTHR11193:SF6	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 10..54
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 10..54
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 7..52 e-value: 1.35476E-24 score: 90.3056
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 9..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g05220.1	Moc06g05220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding