Moc06g04780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g04780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Location	chr6: 3496452 .. 3500070 (+)
RNA-Seq Expression	Moc06g04780
Synteny	Moc06g04780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTCGGTAATTTTGCAGAAAGGCAGGGGCTTTTCCCGCGTATCCCGAAACCTCAAACCCGATTGCTGAAGAACTTGCACTCTGAGCTTCCTCACACCACCGGAGATTTTCTTCCGTTCAGTCCACCATGGTCGACCGCGAACGAGATCGAGACAGAGGCCGCGATAGAGACAAAGACCGCGACCGCGATAGGTACAAGGACCGGGAGCGGGACCGTGACCACCGTGAGCGGGACCGGGAACGGCGTAGGGATCGAGATGACCGTGACCGCGAACGGGAGCGCGGCCGCAGTAAAAGGTCACACACCCCCGACCGCACCAGATCCCGCCACACTCGCTCTCGCACCCGCTCGCCGGACCGGCACCGATCGCGTTCTCTTTCCCGTACTCCTGAGGACCGTTCCGGTCGTCGCCGCCATCGTACGCCCTCTCCGGAACATGCTCGAAAGCGTCACCGCCGGGATTTGACTGCTGACGATGAAAAGGAGAGGCAGAAAGCAGTGTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAACAGAAGAAAAATAAAGATGGTAGCGGTGGTGGTGGCGGTGGAGGGGAAGTAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACAAAGGGTAAGCCAGTCGCTGGTGCTGATGTGAGTGGCGTTAGGGTAGTGACCAAGCGGCAGCCTAGGCAGTACATGAATCGGCGAGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGAGCCGGTAGCTAATTGATTTGGCTAGGTCTCTGAGGTTAGTCTATTATAGATGTATTATTTCTCAGTTTTGGATTTGTTTTATTACGCCGTCTTGTGATGATTTGGGAATTTTGAGCTCCGCTTGTAATTCGTACAACTAGAATTTCTAGTACTTAAAAAGAATGTTGCGACAATTGAATAGCTTAGCTCCCATGCTTTCCACCTTGAAGTTTGAGCAACAATTTAGCATGTCTCCAGGTTCTTGTTCTAATTACTGGAACGAGAGTGCTTTTGCCTTCTCCCTGAGGATCTGCTATAAATATTCAGGTTGATGTGTTTGGCTAATGGTACTGTGTTTCTATGCTCCTCTTCTTGGTCACTTGTCATATTACGGATGTTCACTGGGTTATCTCCTCATCCTCAAGTCTCTGACCAAAGTACTTTACATTTATACTGCTGATAGTGCTCCTTGTTCTTCTCTTTGAGAGATTTTATTCATGACTGGTTACTTTGTCAAATTTGATCTGTTTCAATGCCAGAGGATTTTTAGACACATATTATCAGTAATCATTGGATTGTGGAAATATGAATTCTTTACACATTTGAAAATATATCCAAATATTTTGAACTTTGTTTGTACCATTTTGATTGTACAAGAGGTGAAGGTAGAATTGTACATTTTCTAGGATTATCAAAGAGAACTTGGAGAACCCCCAAATTTTATTTAGATTAAATGTTGTGATGTACTTGTTTCAAATGCAACTCCACTCCATAACCTTTAGATCTATAGTAGGGAAGAAGCACCCTGTATCATGATATTGATTCTACATAGAACTTATGTGTATAGTTGGTGGAAACATTAATTTCTAATGTGAGTTAGTTTGTTTATAGCTAATATGAAGCAACAGTTGGTGGAAGTTTAAAAATGATGAATTTAGGTACACATTGTCAGACCAGCTGATATATGAAATAGGTTTTAGAATTGTGGGTTGAAATTTATATGGATGGTAAAATATGAAACTGAATATAGCTCTCACTTGCTTTCAGAGAAACGACCAAGACTGACATTCTTCCAGAAATCATTGAGCATGGGAGATGCATGCAGATAAAACTATTCTGATGTACTCTGGCATATTCTGGTAATAAAATATTGTTAGTTGTTACTAGATATGTTTCTGCTTAATTTGAAGTTTCTGATATGGTCAAAGTATCATGGTTGGGGGAGGTTTAGAAGCTTTTTAAGCATACCTCAACTGAGATTATTTTCCATTAGTAAATAGTTTACTATTAACATGGTTGGCTTCTTGATGATGTTGGAAGCCCATGACTTAGAAATAAAGAAACAAAATTTTTCATTGGATGTGTATGAAGGAGAACAGAGAAATACTCTCTGCAATCCGAGAACACACAAAAGACATGGCCAAAAACAGTTTATTAGAACAAATAAAACTCTTTGCGAAGGGTATGCCAGCAAGAAGCAAAAAAATCAGCTAGGCACCACATCCTCCTTCCCGATGGTTATTCTTTCCCATAAAGTTCTACTTCTTTGCTTGAACCAAAGCTCCTAAATTATCATCTTAAACTTTTGATTTCCCCTGCATTCAACTGGATTACCCAAGGTACTCTCTCAAATCTTGGAGAAAGGCCCTCCAAATATATAGACTATACTGGAAATGGACAAACAGTGAATTTGATTTTTTCTTCCTGCAAAATAGAGGACACCAATTCAGTTTTGGAACCCTCCGCTTAATAATATCCCCCGTGTTACTTCACCCAAGAATTTGGGAATAAGAAAAAATTAACCTTGATTGTATTTGTATAGTAGGTTGATATAGATGTTCCTCAAGGCAGCAGTTTTGAAAATAGTGATTTAGAGGAAAATTTGCCTTTGCCTATCATCATTGTTGGTTAGCTGTATCTTTTCCAGTGACCCAGTTACTTCTTTGACCTCTTATTCCACCAGTGTTTTCTAAGTTTGAGGCCCCAACTCTCAGATGTCATCATATCCCAAAACTCCCTCACACTCGACTTTTTGGGCAGCTGGATTTTTTAATATGAGAAAATATCCTTCAAGGTGTAATTAACATCCCAAACATCTCACAAGTAGATTGATCTTCTATTTTTTTCACTCTAAACCTCGAACATCTCACACTACTTCAATTTTATTATACTTCCTCACACGCTTCCACTAGGCACATTATTCTTTGAATCTTAGCTCCATCGTCCGTCCTAGAGGATCCTTGCCATGCTTGGTATGTTTTTGTGCCACAAATCTTATTGCTCATTCAAGAATCTCCATTTTGGCGAACAGGGCCTCATACCCAGTGGCCACACACGGGCCAGAGGGAGGACGTAAGCTGCCCAGTCTCACTTTCCCTCCTTTTTAATCATTATAAACATAGTTTTTTGTTTAAATAATTTTTAATATTAACAGTGCCTGCCTTGTGAACCCTTTCTTTTCCCTCTCTTGATGCGTATATATTAGAAAAGAACTGTAGGACTTGGAACCTTATCCACTGTTAAGGACTTAAGGCAAGCAAGACGGAAATGGAAGCAACTGAAAAGATATGTCTAAATCCTTCGATTCTGATTTTTTTTTTAATGGATTCAAGGAAAATAGTAGTAATTGTGCATCCATTGCAGCTTTGCTCTGTATTTACATTCCATTGCCGTTCCAGCGTGTCTTATAGCTTTCCTTTTATCGTGCAATGGTAAATTTAGGTGTATCTTTTAGATTTATGTGAGGCTAGTTCAGTGATACTAGTTTGAGCTACTTTTTGCTTTCTGCAGGGTTTGGTTTACTAGGCTTCACTGGAGGCCAGATGAAGTCTTTAGACGCTCTATAG

mRNA sequence

ATGGCTGTTTCGGACCGTTCCGGTCGTCGCCGCCATCGTACGCCCTCTCCGGAACATGCTCGAAAGCGTCACCGCCGGGATTTGACTGCTGACGATGAAAAGGAGAGGCAGAAAGCAGTGTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAACAGAAGAAAAATAAAGATGGTAGCGGTGGTGGTGGCGGTGGAGGGGAAGTAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACAAAGGGTAAGCCAGTCGCTGGTGCTGATGTGAGTGGCGTTAGGGTAGTGACCAAGCGGCAGCCTAGGCAGTACATGAATCGGCGAGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGAGCCGGTTGATGTGTTTGGCTAATGGTACTGTGTTTCTATGCTCCTCTTCTTGGTCACTTGTCATATTACGGATGTTCACTGGGTTATCTCCTCATCCTCAAGTCTCTGACCAAACGTGTCTTATAGCTTTCCTTTTATCGTGCAATGGGTTTGGTTTACTAGGCTTCACTGGAGGCCAGATGAAGTCTTTAGACGCTCTATAG

Coding sequence (CDS)

ATGGCTGTTTCGGACCGTTCCGGTCGTCGCCGCCATCGTACGCCCTCTCCGGAACATGCTCGAAAGCGTCACCGCCGGGATTTGACTGCTGACGATGAAAAGGAGAGGCAGAAAGCAGTGTCTGACTTCGTTGATGGCATTGCGAAGGAGCAGCACAAACAGAAGAAAAATAAAGATGGTAGCGGTGGTGGTGGCGGTGGAGGGGAAGTAGTGGAGGAGGCCATGGCTGATGAGGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACAAAGGGTAAGCCAGTCGCTGGTGCTGATGTGAGTGGCGTTAGGGTAGTGACCAAGCGGCAGCCTAGGCAGTACATGAATCGGCGAGGTGGGTTCAACCGGCCGTTGCCGGCCGAGCGGAGCCGGTTGATGTGTTTGGCTAATGGTACTGTGTTTCTATGCTCCTCTTCTTGGTCACTTGTCATATTACGGATGTTCACTGGGTTATCTCCTCATCCTCAAGTCTCTGACCAAACGTGTCTTATAGCTTTCCTTTTATCGTGCAATGGGTTTGGTTTACTAGGCTTCACTGGAGGCCAGATGAAGTCTTTAGACGCTCTATAG

Protein sequence

MAVSDRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSRLMCLANGTVFLCSSSWSLVILRMFTGLSPHPQVSDQTCLIAFLLSCNGFGLLGFTGGQMKSLDAL

Homology

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BLAST of Moc06g04780 vs. NCBI nr
Match: XP_022135124.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia])

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG
Sbjct: 90  DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 149

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
           GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR
Sbjct: 150 GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 209

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAERSR
Sbjct: 210 GGFNRPLPAERSR 222

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BLAST of Moc06g04780 vs. NCBI nr
Match: XP_008453595.1 (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo] >KAA0058267.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa] >TYK11820.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 7.2e-56
Identity = 120/133 (90.23%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRS RRRHR+PSP+HARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK NKD +   
Sbjct: 104 DRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNA--- 163

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            G GEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRR
Sbjct: 164 -GSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRR 223

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAER+R
Sbjct: 224 GGFNRPLPAERTR 232

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BLAST of Moc06g04780 vs. NCBI nr
Match: XP_004146322.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65465.1 hypothetical protein Csa_019811 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-55
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DR  RRRHR+PSP+HARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK NKD     
Sbjct: 104 DRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNV--- 163

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            GGGEVVEEAMADEDE+EMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRR
Sbjct: 164 -GGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRR 223

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAERSR
Sbjct: 224 GGFNRPLPAERSR 232

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BLAST of Moc06g04780 vs. NCBI nr
Match: XP_038880340.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 3.6e-55
Identity = 119/133 (89.47%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           +RS RRRHR+PSP+HARKRHRRDLTADDE+ERQKAVSDFVDGIAKEQHKQK NKD     
Sbjct: 100 ERSHRRRHRSPSPDHARKRHRRDLTADDERERQKAVSDFVDGIAKEQHKQKNNKDSV--- 159

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            GGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRR
Sbjct: 160 -GGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRR 219

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAER+R
Sbjct: 220 GGFNRPLPAERTR 228

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BLAST of Moc06g04780 vs. NCBI nr
Match: KAG6589703.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023383.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 2.3e-54
Identity = 118/133 (88.72%), Postives = 122/133 (91.73%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRS RRRHR+PSP+H RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQK NKD     
Sbjct: 101 DRSLRRRHRSPSPDHVRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSV--- 160

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            GGGE VEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVR VTKRQPRQYMNRR
Sbjct: 161 -GGGESVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRR 220

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAER+R
Sbjct: 221 GGFNRPLPAERTR 229

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BLAST of Moc06g04780 vs. ExPASy Swiss-Prot
Match: Q8K194 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-08
Identity = 53/127 (41.73%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 9   RRRHRTPSPEHARKRH-RRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGG 68
           RRR R+ SP   R R  RR  +      R K   D      K++ K+ KNK+        
Sbjct: 38  RRRSRSRSPHRRRSRSPRRHRSTSPSPSRLKERRD----EEKKETKEIKNKE-------- 97

Query: 69  GEVVEEAM--ADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRVVTKRQPRQYMNRR 128
            ++ EE +    E+EIEMMK +G    FDSTKGK V G+ +   + V  KR+ RQYMNR+
Sbjct: 98  RQITEEDLEGKTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRK 151

Query: 129 GGFNRPL 132
           GGFNRPL
Sbjct: 158 GGFNRPL 151

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BLAST of Moc06g04780 vs. ExPASy Swiss-Prot
Match: Q6GLZ8 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08
Identity = 51/135 (37.78%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 2   AVSDRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQH--KQKKNKD 61
           A  +R  RRR R+ S E  R R R          R+   S       K++    +K+ K+
Sbjct: 21  ASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPSRLKDRRDDDKKEPKE 80

Query: 62  GSGGGGGGGEVVEEAM--ADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRVVTKRQ 121
             GGG    ++  E +    E+EIEMMK +G    FDS+KGK   G+ +   + V  KR+
Sbjct: 81  SKGGGSKERQLAAEDLEGKTEEEIEMMKLMGF-ASFDSSKGKKTDGSVNAYAINVSQKRK 140

Query: 122 PRQYMNRRGGFNRPL 132
            RQYMNR+GGFNRPL
Sbjct: 141 YRQYMNRKGGFNRPL 154

[Close]

BLAST of Moc06g04780 vs. ExPASy Swiss-Prot
Match: Q8WVK2 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08
Identity = 52/127 (40.94%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 9   RRRHRTPSPEHARKRH-RRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGG 68
           RRR R+ SP   R R  RR  +      R K   D      K++ K+ K+K+        
Sbjct: 38  RRRSRSRSPHRRRSRSPRRHRSTSPSPSRLKERRD----EEKKETKETKSKE-------- 97

Query: 69  GEVVEEAM--ADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRVVTKRQPRQYMNRR 128
            ++ EE +    E+EIEMMK +G    FDSTKGK V G+ +   + V  KR+ RQYMNR+
Sbjct: 98  RQITEEDLEGKTEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRK 151

Query: 129 GGFNRPL 132
           GGFNRPL
Sbjct: 158 GGFNRPL 151

[Close]

BLAST of Moc06g04780 vs. ExPASy Swiss-Prot
Match: Q6DDA4 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-08
Identity = 49/133 (36.84%), Postives = 66/133 (49.62%), Query Frame = 0


Query: 2   AVSDRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGS 61
           A  +R  RRR R+ S E  R R R          R+   S    G  K++    K     
Sbjct: 21  ASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPGRLKDRRDDDKKDSKE 80

Query: 62  GGGGGGGEVVEEAM--ADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DVSGVRVVTKRQPR 121
             G    ++  E +    E+EIEMMK +G    FD++KGK V G+ +   + V  KR+ R
Sbjct: 81  SKGAKERQIAAEDLEGKTEEEIEMMKMMGFAT-FDTSKGKKVDGSVNAYAINVSQKRKYR 140

Query: 122 QYMNRRGGFNRPL 132
           QYMNR+GGFNRPL
Sbjct: 141 QYMNRKGGFNRPL 152

[Close]

BLAST of Moc06g04780 vs. ExPASy Swiss-Prot
Match: Q6DH74 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.6e-04
Identity = 45/145 (31.03%), Postives = 71/145 (48.97%), Query Frame = 0


Query: 6   RSGRRRHRTPSPEHARKRHRRDLTADDEKERQKA----------------VSDFVDGIAK 65
           R  RRR R+ S +  R+R  R+ +   +++R+++                 S  +  + +
Sbjct: 11  RRERRRSRSSSRDRERRRRERERSRSRDRDRRRSRSRSPHRRRSRSPRRHRSSSLSPLRQ 70

Query: 66  EQHKQKKNKDGSGGGGGGGEVVEEAM--ADEDEIEMMKKLGIPVGFDSTKGKPVAGA-DV 125
           +  +    KD         ++  E M    E+EIEMMK +G    F+++KGK   G+   
Sbjct: 71  KDRRDDDRKDVKEKPAKVHQISAEDMQGKTEEEIEMMKLMGFG-SFETSKGKKKDGSIKA 130

Query: 126 SGVRVVTKRQPRQYMNRRGGFNRPL 132
             V V  KR+ RQYMNR+GGFNRPL
Sbjct: 131 FAVNVSQKRKYRQYMNRKGGFNRPL 154

[Close]

BLAST of Moc06g04780 vs. ExPASy TrEMBL
Match: A0A6J1C0K3 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia OX=3673 GN=LOC111007178 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 5.3e-65
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG
Sbjct: 90  DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 149

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
           GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR
Sbjct: 150 GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 209

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAERSR
Sbjct: 210 GGFNRPLPAERSR 222

[Close]

BLAST of Moc06g04780 vs. ExPASy TrEMBL
Match: A0A5D3CK71 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00330 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.5e-56
Identity = 120/133 (90.23%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRS RRRHR+PSP+HARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK NKD +   
Sbjct: 104 DRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNA--- 163

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            G GEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRR
Sbjct: 164 -GSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRR 223

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAER+R
Sbjct: 224 GGFNRPLPAERTR 232

[Close]

BLAST of Moc06g04780 vs. ExPASy TrEMBL
Match: A0A1S3BW27 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.5e-56
Identity = 120/133 (90.23%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRS RRRHR+PSP+HARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK NKD +   
Sbjct: 104 DRSSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNA--- 163

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            G GEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRR
Sbjct: 164 -GSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRR 223

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAER+R
Sbjct: 224 GGFNRPLPAERTR 232

[Close]

BLAST of Moc06g04780 vs. ExPASy TrEMBL
Match: A0A0A0LU61 (SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 5.9e-56
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DR  RRRHR+PSP+HARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK NKD     
Sbjct: 104 DRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNV--- 163

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            GGGEVVEEAMADEDE+EMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRR
Sbjct: 164 -GGGEVVEEAMADEDEMEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRR 223

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAERSR
Sbjct: 224 GGFNRPLPAERSR 232

[Close]

BLAST of Moc06g04780 vs. ExPASy TrEMBL
Match: A0A6J1EW85 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111436672 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 7.2e-54
Identity = 117/133 (87.97%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGG 64
           DRS RRRHR+PSPEHARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQKKNKD     
Sbjct: 94  DRSLRRRHRSPSPEHARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDSV--- 153

Query: 65  GGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRR 124
            GG EVVEEA+ADEDEIEMMKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRR
Sbjct: 154 -GGEEVVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRR 213

Query: 125 GGFNRPLPAERSR 138
           GGFNRPLPAER+R
Sbjct: 214 GGFNRPLPAERTR 222

[Close]

BLAST of Moc06g04780 vs. TAIR 10
Match: AT5G57370.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 135.6 bits (340), Expect = 4.5e-32
Identity = 80/135 (59.26%), Postives = 94/135 (69.63%), Query Frame = 0


Query: 5   DRSGRRRHRTPSPEHARKRHRRDLTADDEKE--RQKAVSDFVDGIAKEQHKQKKNKDGSG 64
           DR    R R+PSP+   ++  R  + DDEKE  R++ V+D VD  A    K+K  +    
Sbjct: 87  DRQRHHRRRSPSPDAPSRKRPRQGSVDDEKERNRKRVVTDSVDENASTITKKKDKQPSDA 146

Query: 65  GGGGGGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMN 124
              GGGE  +E   D +EIEMMK LGIP GFDSTKGKPVAGADVSG+R VTKRQPRQYMN
Sbjct: 147 ADNGGGE--DEEGMDVNEIEMMKMLGIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMN 206

Query: 125 RRGGFNRPLPAERSR 138
           RRGGFNRPLPAER+R
Sbjct: 207 RRGGFNRPLPAERNR 219

The following BLAST results are available for this feature:

BLAST of Moc06g04780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135124.1	1.1e-64	100.00	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia]	[more]
XP_008453595.1	7.2e-56	90.23	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo...	[more]
XP_004146322.1	1.2e-55	90.23	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65...	[more]
XP_038880340.1	3.6e-55	89.47	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Benincasa hispida]	[more]
KAG6589703.1	2.3e-54	88.72	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]

BLAST of Moc06g04780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K194	1.5e-08	41.73	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090...	[more]
Q6GLZ8	2.0e-08	37.78	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=835...	[more]
Q8WVK2	3.4e-08	40.94	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ...	[more]
Q6DDA4	3.4e-08	36.84	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX...	[more]
Q6DH74	6.6e-04	31.03	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 G...	[more]

BLAST of Moc06g04780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C0K3	5.3e-65	100.00	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia O...	[more]
A0A5D3CK71	3.5e-56	90.23	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. mak...	[more]
A0A1S3BW27	3.5e-56	90.23	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LU61	5.9e-56	90.23	SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=...	[more]
A0A6J1EW85	7.2e-54	87.97	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moscha...	[more]

BLAST of Moc06g04780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57370.1	4.5e-32	59.26	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	PFAM	PF08648	SNRNP27	coord: 78..133 e-value: 5.8E-25 score: 87.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..59
None	No IPR available	PANTHER	PTHR31077:SF4	BNAA10G11430D PROTEIN	coord: 9..137
None	No IPR available	PANTHER	PTHR31077	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 9..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc06g04780.1	Moc06g04780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus