Moc06g00550 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc06g00550
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionMYND-type domain-containing protein
Locationchr6: 356618 .. 360121 (+)
RNA-Seq ExpressionMoc06g00550
SyntenyMoc06g00550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCCCTCCAAGAGGCCAAGAACATGCCGGAAACCCGCCGCAGATTCCGATCTCTTCGATGTCTTGCCGGACGATCTCCTAATTCACCTCCTCCGCCGCCTCGCCTCCTCCGCCTCCTCCCCTTCCGACCTCCTCAATCTTCTGTTAACGTACGCGCTCGCCTTTTTACAAGGAACAATTAGAGATTCTTTTTAATTTCCTCTGTTTTCTCCTGTTGATTTTGCAATCGAGGTTTTCGATTTTGCTTGGTTCTTAAATTTCTCGTCGTTTTTGCAGATGCAAGAGGTTGAATCGCCTGGCTCTTCATCCTTTGGTGTTGTCTAAAGCCGGACCGAAAGCGTTTGCAGTTAAAACCGAAAACTGGTGCGAGTCCGCTCACCGATTCCTCAAACGCTGCGTTGAAGCCGGCAACTCAGAAGCAAGTTACACGCTCGGAATGGTCAGTATTTTGTTGATTTCTGGGAGAAATTGAATAATAAATATTAATTACTCTCGACGAAATGCGAAATGATGTCTGTGTTTTCTTCTCCCCTGTAGATCCGATTTTATTGCTTGAGAAATCGAGGGAGTGGAGCTTCTTTAATGGCGAAAGCAGCCATCAAATCTCACGCTCCGGCGCTCTACTCGCTCGCCGTGATTCAATTCAACGGCAGCGGCGGCTCTAAGAGCGACAAGGACCTCCAAGCCGGAGTAGCCCTATGTGCTCGAGCCGCTTTTCTCGGCCATGTGGACGCGCTTCGCGAACTCGGCCATTGCCTTCAAGACGGTTACGGCGTGCGCCGAAACACCGACGAAGGCCGCCGCCTGCTGATCCAAGCCAACGCCCGTGAGCTTTCTTCCGTCCTAATCTCCTCCTCCAGGGTATGCCAGCAGCGCCACCACGGCGGCCTTCTCGATTTGACAGCCAGTACAAGTTGTTTGTTGCTGAGTGATTTCGGCTGTAACATTCCGGCGCCGGAGCCACATCCGGTGAACTTGTTTTTGAGAGAGTGGTTTGAGACGGAACGTCGAGCGATGGCGCGTCAGGGGCTGAGACTCTGCTCGCACGCCGGATGCGGCCGGCCGGAGACTCGACCGCGCGAGTTCCGACGGTGCTCGGTCTGCGGCACGGTGAATTATTGTTCTCGAGGATGCCAGGCGCAGGATTGGAAACTCCGCCATAAGGTGGGCTGCAGACCAATTGAGCAGTGGCGAAATGAGGCTGAGAACGATCCCGGCGGCGTATTTGCTATGGTAGAAGAGTAGGAGCGCAACGTCGTGGGTATTGTATGACGACAGCGCTGTAATTAAAGTTATTTATGAAATTTTATAAAACATTATCTTTTTTTTTCCTTTTTCCTTCGATTTTATTATTGGGTTCTTCAAATTAACCATTTTTGTACCAAAAAGAAAAGTCCTATCATATTGGGAGACTACATCAGAAGCAACGATAACCGACAAAGTTTTTCAGTGAATTAGTAATATTTTAAAAAGCGATCCTGAAAATTAATAAGGATGTTTTTTTATATAGAAATTTTAATAAGGATTTAACCTGTATTTTCTTAAAGGAAAAAAAATCAAGTGATGTTAATTTCTTTTTATTCTTAGTTATAGAGGTTTTTTTTTTTTTTTTTTGACGGAGAGTTATAGAGTTAAATGAACAAAGAGAATAAACTTTGAGGCAATTACATAGATGTTATCTAAAAAAAACATAAATGACAAATTTTTTTAAACTCGTAACAAGTTTAAAAATTTTAACAAATTCCTTCCGAAAAAAATTAACAAATAAATATAATGTGATTTGATTTGAATTCAACCGAGAGAAGAAAAATAAATCAAGTTCGCAATATTTTTTTAAAGTTTAAAACGCACCGACATTTTAAAAATATAAATATTTTGGCTCCCAGTGTAATTTTTTCGAACTTTCTACCATTCCAATTCAAATTCAAATTCTGTCAATTTAAATTTAAATCTGATTCAAATGTGATTCGATTATATATGGATTCAATAACAATAGAATATAAAATTTTTAGTGTTGAAATTTAACCATTATATATATTTTTTTCATTTTGTCAATGTATTAGAACTACAATGCATTCTAAAATTATTTTAAAAAAAATTGAGAATTTTTACTACATTCAGTGTATTTTTTTAAAACCTCACAAAATTTTTAATTTTTTTCAAATATTTATTGGTGTAAGTTTTCTTATTTTATATATTGTAACCCTTACGTTCTAAAAAAAAATCTCTACTGTATTTTCTGTTATATTTAAATTTAAGTTTAATTCGAATTATGTTATATTTTAAAAGTTTAAACTTTCTATTATTTTTAAAATATAGTTTTTATTTATTTATTATTATTTTTTTAGAAAAATTGGATATTATTATTTTGATAAACTAAAAATATAGTTATTTTATGCCATGCAAACACCTCAAAAACATTTCAATCAAATTCTTTCTGAAGTTGAATAATTTCATTAAAACCTAATAATAAATGATGATGTGACATTTAATTTTATTTTTTGAAACTCAAATATTTACACGTCGTACCCAATTTGAAAAATTGGATCTGTTCTATTTGAATAGAGAATTGACTTGATACAGTATTATAGTAGAAATGCTTCATATTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTACAAATTGCTTCATCTATCGCTACCATACAAAATTCAACAATCTAAACCTTGGTCTTCGTGCAATCGTCTAATTTTCTCCATTTATGCAAACACTCTTTCGCCTTTTTTTTTCTCCCTTTTCTCCGTCCCTCTTTTCTTTGTTATCGTGATATCCTCTTTACTTTATTCACGAATATTCTAAAAATTGACAAATGTACATCTACCAATCCTTTTAACTTTTTTTTTTTTAGACTACAATATCCTAATCTTCTAATATCTAAAATTACGTCTCTCCTGCCAGCTACAAAAACCTCTATTTCTTCATACTTTTGGCGAGGTTTTATTTGGGGGAGAGATCTCCTTGTAAGCAGATTGAGCCTTCGGGTTAGAAGGGGATCATCTATCAAGGCTTATTCTGACCCATGGCTTTCAAGATCCAATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACATACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTTCCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAAGCCATAAAATTCGCTGCAGCGGTGAACTGCACCCATTTGAAAGTGGAATCTGATTCCCTTGAAGCTATTCGGTTGATCAAGAGAAGAAATATCCACCATGGGAGGTGA

mRNA sequence

ATGATTCCCTCCAAGAGGCCAAGAACATGCCGGAAACCCGCCGCAGATTCCGATCTCTTCGATGTCTTGCCGGACGATCTCCTAATTCACCTCCTCCGCCGCCTCGCCTCCTCCGCCTCCTCCCCTTCCGACCTCCTCAATCTTCTGTTAACATGCAAGAGGTTGAATCGCCTGGCTCTTCATCCTTTGGTGTTGTCTAAAGCCGGACCGAAAGCGTTTGCAGTTAAAACCGAAAACTGGTGCGAGTCCGCTCACCGATTCCTCAAACGCTGCGTTGAAGCCGGCAACTCAGAAGCAAGTTACACGCTCGGAATGATCCGATTTTATTGCTTGAGAAATCGAGGGAGTGGAGCTTCTTTAATGGCGAAAGCAGCCATCAAATCTCACGCTCCGGCGCTCTACTCGCTCGCCGTGATTCAATTCAACGGCAGCGGCGGCTCTAAGAGCGACAAGGACCTCCAAGCCGGAGTAGCCCTATGTGCTCGAGCCGCTTTTCTCGGCCATGTGGACGCGCTTCGCGAACTCGGCCATTGCCTTCAAGACGGTTACGGCGTGCGCCGAAACACCGACGAAGGCCGCCGCCTGCTGATCCAAGCCAACGCCCGTGAGCTTTCTTCCGTCCTAATCTCCTCCTCCAGGGTATGCCAGCAGCGCCACCACGGCGGCCTTCTCGATTTGACAGCCAGTACAAGTTGTTTGTTGCTGAGTGATTTCGGCTGTAACATTCCGGCGCCGGAGCCACATCCGGTGAACTTGTTTTTGAGAGAGTGGTTTGAGACGGAACGTCGAGCGATGGCGCGTCAGGGGCTGAGACTCTGCTCGCACGCCGGATGCGGCCGGCCGGAGACTCGACCGCGCGAGTTCCGACGGTGCTCGGTCTGCGGCACGGTGAATTATTGTTCTCGAGGATGCCAGGCGCAGGATTGGAAACTCCGCCATAAGGTGGGCTGCAGACCAATTGAGCAGTGGCGAAATGAGGCTGAGAACGATCCCGGCGGCGTATTTGCTATGGTAGAAGAATTGAGCCTTCGGGTTAGAAGGGGATCATCTATCAAGGCTTATTCTGACCCATGGCTTTCAAGATCCAATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACATACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTTCCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAAGCCATAAAATTCGCTGCAGCGGTGAACTGCACCCATTTGAAAGTGGAATCTGATTCCCTTGAAGCTATTCGGTTGATCAAGAGAAGAAATATCCACCATGGGAGGTGA

Coding sequence (CDS)

ATGATTCCCTCCAAGAGGCCAAGAACATGCCGGAAACCCGCCGCAGATTCCGATCTCTTCGATGTCTTGCCGGACGATCTCCTAATTCACCTCCTCCGCCGCCTCGCCTCCTCCGCCTCCTCCCCTTCCGACCTCCTCAATCTTCTGTTAACATGCAAGAGGTTGAATCGCCTGGCTCTTCATCCTTTGGTGTTGTCTAAAGCCGGACCGAAAGCGTTTGCAGTTAAAACCGAAAACTGGTGCGAGTCCGCTCACCGATTCCTCAAACGCTGCGTTGAAGCCGGCAACTCAGAAGCAAGTTACACGCTCGGAATGATCCGATTTTATTGCTTGAGAAATCGAGGGAGTGGAGCTTCTTTAATGGCGAAAGCAGCCATCAAATCTCACGCTCCGGCGCTCTACTCGCTCGCCGTGATTCAATTCAACGGCAGCGGCGGCTCTAAGAGCGACAAGGACCTCCAAGCCGGAGTAGCCCTATGTGCTCGAGCCGCTTTTCTCGGCCATGTGGACGCGCTTCGCGAACTCGGCCATTGCCTTCAAGACGGTTACGGCGTGCGCCGAAACACCGACGAAGGCCGCCGCCTGCTGATCCAAGCCAACGCCCGTGAGCTTTCTTCCGTCCTAATCTCCTCCTCCAGGGTATGCCAGCAGCGCCACCACGGCGGCCTTCTCGATTTGACAGCCAGTACAAGTTGTTTGTTGCTGAGTGATTTCGGCTGTAACATTCCGGCGCCGGAGCCACATCCGGTGAACTTGTTTTTGAGAGAGTGGTTTGAGACGGAACGTCGAGCGATGGCGCGTCAGGGGCTGAGACTCTGCTCGCACGCCGGATGCGGCCGGCCGGAGACTCGACCGCGCGAGTTCCGACGGTGCTCGGTCTGCGGCACGGTGAATTATTGTTCTCGAGGATGCCAGGCGCAGGATTGGAAACTCCGCCATAAGGTGGGCTGCAGACCAATTGAGCAGTGGCGAAATGAGGCTGAGAACGATCCCGGCGGCGTATTTGCTATGGTAGAAGAATTGAGCCTTCGGGTTAGAAGGGGATCATCTATCAAGGCTTATTCTGACCCATGGCTTTCAAGATCCAATTCTTTTCTACATGGAAAGCAAATTTCTCCTCTTGTCATGAGAGGCGAATGGATTCTAAATTACTTCAACCAATATGAACAAGCTAGGATTAAGTCACATACCGCTAACAGGAGTACCGCTACTTCTCAAGCCCATCAGCAATGGAGACCTCCAGCAGAAAATTCCTTTAAATTGAACACGGACGTGGCTTGTAGACCAAATTTATCTTCCATCGGGGCTGTGCTTCGTGATTCAAATGGTTTCCTTGTTGCGGCAACAATGATTCAACATCCTTCTCCCCTGCCTCCTCTGTTGACGGAAATTTGGGGAATTTTGGAAGCCATAAAATTCGCTGCAGCGGTGAACTGCACCCATTTGAAAGTGGAATCTGATTCCCTTGAAGCTATTCGGTTGATCAAGAGAAGAAATATCCACCATGGGAGGTGA

Protein sequence

MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLALHPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHHGGLLDLTASTSCLLLSDFGCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKLRHKVGCRPIEQWRNEAENDPGGVFAMVEELSLRVRRGSSIKAYSDPWLSRSNSFLHGKQISPLVMRGEWILNYFNQYEQARIKSHTANRSTATSQAHQQWRPPAENSFKLNTDVACRPNLSSIGAVLRDSNGFLVAATMIQHPSPLPPLLTEIWGILEAIKFAAAVNCTHLKVESDSLEAIRLIKRRNIHHGR
Homology
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BLAST of Moc06g00550 vs. NCBI nr
Match: XP_023516460.1 (F-box protein At1g67340-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 585.9 bits (1509), Expect = 3.4e-163
Identity = 290/344 (84.30%), Postives = 311/344 (90.41%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MISAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRN+DEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 181 DGYGVRRNSDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 240

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER   AR GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 241 GCDFPATEPHPVNLFLREWFESERGVAARVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 300

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQAQDWK+RHK  C  +++W++ E +N  GG+F  VEE+
Sbjct: 301 YCSRGCQAQDWKVRHKEECTAVQRWQDAEVDNAGGGIFNAVEEV 343

[Close]
BLAST of Moc06g00550 vs. NCBI nr
Match: XP_022921747.1 (F-box protein At1g67340-like [Cucurbita moschata])

HSP 1 Score: 583.9 bits (1504), Expect = 1.3e-162
Identity = 290/344 (84.30%), Postives = 310/344 (90.12%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLN LLTCKRLNRL L
Sbjct: 1   MISAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNPLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRNTDEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 181 DGYGVRRNTDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 240

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER   AR GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 241 GCDFPATEPHPVNLFLREWFESERGVAARVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 300

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQAQDWK+RHK  C  +++W++ E +N  GG+F  VEE+
Sbjct: 301 YCSRGCQAQDWKVRHKEECTAVQRWQDAEVDNAGGGMFNAVEEV 343

[Close]
BLAST of Moc06g00550 vs. NCBI nr
Match: KAG7023063.1 (F-box protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 583.9 bits (1504), Expect = 1.3e-162
Identity = 289/344 (84.01%), Postives = 311/344 (90.41%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MISAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSK+DKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKNDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRN+DEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 181 DGYGVRRNSDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 240

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER   AR GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 241 GCDFPATEPHPVNLFLREWFESERGVAARVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 300

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQAQDWK+RHK  C  +++W++ E +N  GG+F  VEE+
Sbjct: 301 YCSRGCQAQDWKVRHKEECTAVQRWQDAEVDNAGGGMFNAVEEV 343

[Close]
BLAST of Moc06g00550 vs. NCBI nr
Match: KAG6589385.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 583.9 bits (1504), Expect = 1.3e-162
Identity = 289/344 (84.01%), Postives = 311/344 (90.41%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLNLLLTCKRLNRL L
Sbjct: 73  MISAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNLLLTCKRLNRLVL 132

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 133 HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 192

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSK+DKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 193 MAKAAIKSHAPALYSLAVIQFNGSGGSKNDKDLQAGVALCARAAFLGHVDALRELGHCLQ 252

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRN+DEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 253 DGYGVRRNSDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 312

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER   AR GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 313 GCDFPATEPHPVNLFLREWFESERGVAARVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 372

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQAQDWK+RHK  C  +++W++ E +N  GG+F  VEE+
Sbjct: 373 YCSRGCQAQDWKVRHKEECTAVQRWQDAEVDNAGGGMFNAVEEV 415

[Close]
BLAST of Moc06g00550 vs. NCBI nr
Match: XP_022987090.1 (F-box protein At1g67340-like [Cucurbita maxima])

HSP 1 Score: 573.2 bits (1476), Expect = 2.3e-159
Identity = 284/344 (82.56%), Postives = 306/344 (88.95%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           M  +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MSSAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRC +AGNSEASYTLGMIRFYCL NRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCADAGNSEASYTLGMIRFYCLTNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRN+DEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 181 DGYGVRRNSDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 240

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER    R GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 241 GCDFPATEPHPVNLFLREWFESERGVAGRVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 300

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQ+QDWK+RHK  C  +++W++ E +N  G +F  VEE+
Sbjct: 301 YCSRGCQSQDWKIRHKEECTAVQRWQDAEVDNAGGVMFNAVEEV 343

[Close]
BLAST of Moc06g00550 vs. ExPASy Swiss-Prot
Match: Q9FYF9 (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 8.7e-122
Identity = 212/323 (65.63%), Postives = 250/323 (77.40%), Query Frame = 0 

Query: 17  SDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLALHPLVLSKAGPKAFAVK 76
           +DL D +PDDL+I +L +L S++  P+D +N+LLTCKRL  LA++P+VLS+  PKA AVK
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 77  TENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPALYSL 136
             NW E +HRFLKRCV+AG+ EA YTLGMIRFYCL+NRG+GASLMAKAAI SHAPALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 137 AVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRRNTDEGRRLL 196
           AVIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQDGYGV +N  EGRR L
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 197 IQANARELSSVLIS-----SSRVCQQRHHGGLLDLTASTSCLLLSDFGCNIPAPEPHPVN 256
           +QANAREL++VL S     S+ +   +    ++      +C LLSDFGCN+PAPE HP N
Sbjct: 221 VQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPAN 280

Query: 257 LFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKL 316
            FL +WF          GLRLCSHAGCGRPETR  EFRRCSVCG VNYCSR CQA DWKL
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKL 340

Query: 317 RHKVGCRPIEQWRNEAENDPGGV 335
           RHK+ C P+++W  E +   G V
Sbjct: 341 RHKMDCAPVQRWLEEGDGGEGNV 363

[Close]
BLAST of Moc06g00550 vs. ExPASy Swiss-Prot
Match: Q9FK27 (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 6.9e-111
Identity = 202/304 (66.45%), Postives = 236/304 (77.63%), Query Frame = 0 

Query: 20  FDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLALHPLVLSKAGPKAFAVKTEN 79
           F+ L DDL+I +LR+LA+SASSPSD L +L TCKRLNRL LHPLVLSKAG +  AV  E 
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 80  WCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPALYSLAVI 139
           W +S+H+FLK CV AGN +ASY+LGMIRFYCL+N  SGASLMAKAAIKSHAPALYSL+VI
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 140 QFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRRNTDEGRRLLIQA 199
           QFNGSGGSK+DK+L+AGVALCAR+A+LGHVDALRELGHCLQDGYGV R+  EGRRLLIQA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 200 NARELSSVLISSSRVCQQRHHGGLLDLTASTSCLLLSDFGCNIPAPEPHPVNLFLREWFE 259
           NAREL+  L S   +     +  L DL+              +P  E HPVN FL+EWF 
Sbjct: 202 NARELACSLRSYLSLKSGDENETLTDLSV-------------VPVQEIHPVNRFLKEWFS 261

Query: 260 TERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKLRHKVGCRP 319
           + R  +A +GLR+CSH GCGRPETR  EFRRCSVCG VNYCSRGCQA DW+ +HKV C P
Sbjct: 262 SGRVDLA-EGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHKVECTP 311

Query: 320 IEQW 324
           ++ W
Sbjct: 322 LDLW 311

[Close]
BLAST of Moc06g00550 vs. ExPASy Swiss-Prot
Match: Q09415 (SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=4 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-06
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 0 

Query: 278 CGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKLRHKVGCRPIEQWRNEAENDPGGVFAM 337
           C +  T   E ++CS C  + YCS+ CQ  DWKL HKV C+ I+   NE  ND      +
Sbjct: 26  CNQCLTSMAELKKCSACRRLAYCSQECQRADWKL-HKVECKAIKT-HNEVANDS---IRL 85

Query: 338 VEELSLRVRRG--SSIKAYSDPWLSRS 363
           V  ++ ++ R     I+AY  P ++R+
Sbjct: 86  VMRIAGKLSRNEDGEIEAYYIPGVARN 107

[Close]
BLAST of Moc06g00550 vs. ExPASy Swiss-Prot
Match: Q03162 (MYND-type zinc finger protein MUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MUB1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.0e-05
Identity = 26/75 (34.67%), Postives = 36/75 (48.00%), Query Frame = 0 

Query: 269 GLRLCSHAGCGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKLRHKVGCRPIEQWRNEAE 328
           G+R C++  CG+ E  PR+F +C  C    YCSR CQ + W   H+  C  +      + 
Sbjct: 508 GVRQCANFSCGKWEDFPRQFAKCRRCKRTKYCSRKCQLKAWGY-HRYWCHEVGSSHMRST 567

Query: 329 NDPGGVFAMVEELSL 344
           N   GV    E  SL
Sbjct: 568 NTTTGVNTPNEPSSL 581

[Close]
BLAST of Moc06g00550 vs. ExPASy TrEMBL
Match: A0A6J1E1B7 (F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111429904 PE=4 SV=1)

HSP 1 Score: 583.9 bits (1504), Expect = 6.2e-163
Identity = 290/344 (84.30%), Postives = 310/344 (90.12%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLN LLTCKRLNRL L
Sbjct: 1   MISAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNPLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRNTDEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 181 DGYGVRRNTDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 240

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER   AR GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 241 GCDFPATEPHPVNLFLREWFESERGVAARVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 300

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQAQDWK+RHK  C  +++W++ E +N  GG+F  VEE+
Sbjct: 301 YCSRGCQAQDWKVRHKEECTAVQRWQDAEVDNAGGGMFNAVEEV 343

[Close]
BLAST of Moc06g00550 vs. ExPASy TrEMBL
Match: A0A6J1JFU9 (F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111484746 PE=4 SV=1)

HSP 1 Score: 573.2 bits (1476), Expect = 1.1e-159
Identity = 284/344 (82.56%), Postives = 306/344 (88.95%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           M  +KRPRTCR  AA+SDLFDVLPDDLLIHLL RLASSASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MSSAKRPRTCRNFAAESDLFDVLPDDLLIHLLCRLASSASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ E WC+SAHRFLKRC +AGNSEASYTLGMIRFYCL NRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMEKWCDSAHRFLKRCADAGNSEASYTLGMIRFYCLTNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH--GGLLDLTASTSCLLLSDF 240
           DGYGVRRN+DEGRRLLIQANAREL++VL+SSSRV QQRHH  G L DLTA T C LLSDF
Sbjct: 181 DGYGVRRNSDEGRRLLIQANARELAAVLLSSSRVRQQRHHQFGNLPDLTA-TRCSLLSDF 240

Query: 241 GCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVN 300
           GC+ PA EPHPVNLFLREWFE+ER    R GLRLCSH GCGRPETRP EFRRCS+CGTVN
Sbjct: 241 GCDFPATEPHPVNLFLREWFESERGVAGRVGLRLCSHGGCGRPETRPHEFRRCSICGTVN 300

Query: 301 YCSRGCQAQDWKLRHKVGCRPIEQWRN-EAENDPGGVFAMVEEL 342
           YCSRGCQ+QDWK+RHK  C  +++W++ E +N  G +F  VEE+
Sbjct: 301 YCSRGCQSQDWKIRHKEECTAVQRWQDAEVDNAGGVMFNAVEEV 343

[Close]
BLAST of Moc06g00550 vs. ExPASy TrEMBL
Match: A0A5D3BGS7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00550 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.9e-159
Identity = 281/344 (81.69%), Postives = 307/344 (89.24%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI  KRPRT R   ADSDLFDVLPDDLLIHLL  LA+SASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MISVKRPRTRRNFTADSDLFDVLPDDLLIHLLCHLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ +NWC+S+HRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMQNWCDSSHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH---GGLLDLTASTSCLLLSD 240
           DGYGVR+N+DEGRRLL+QANAREL++VL+SSS + QQ+ H   G L DLTA T C LLSD
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSIWQQQRHNQSGNLPDLTA-TRCSLLSD 240

Query: 241 FGCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTV 300
           FGCN+PAPEPHPVNLFLREWFE+E    AR GLRLCSH+GCGR ETRP EFRRCSVCGTV
Sbjct: 241 FGCNVPAPEPHPVNLFLREWFESEGEVAARGGLRLCSHSGCGRAETRPHEFRRCSVCGTV 300

Query: 301 NYCSRGCQAQDWKLRHKVGCRPIEQWRNEAENDPGGVFAMVEEL 342
           NYCSRGCQAQDWK+RHK  C  +++WR+E  N+ G +F +VEE+
Sbjct: 301 NYCSRGCQAQDWKVRHKEECTTVQRWRDEDANNAGEMFDIVEEV 343

[Close]
BLAST of Moc06g00550 vs. ExPASy TrEMBL
Match: A0A1S3CLL0 (F-box protein At1g67340-like OS=Cucumis melo OX=3656 GN=LOC103502322 PE=4 SV=1)

HSP 1 Score: 572.4 bits (1474), Expect = 1.9e-159
Identity = 281/344 (81.69%), Postives = 307/344 (89.24%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI  KRPRT R   ADSDLFDVLPDDLLIHLL  LA+SASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MISVKRPRTRRNFTADSDLFDVLPDDLLIHLLCHLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ +NWC+S+HRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMQNWCDSSHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH---GGLLDLTASTSCLLLSD 240
           DGYGVR+N+DEGRRLL+QANAREL++VL+SSS + QQ+ H   G L DLTA T C LLSD
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSIWQQQRHNQSGNLPDLTA-TRCSLLSD 240

Query: 241 FGCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTV 300
           FGCN+PAPEPHPVNLFLREWFE+E    AR GLRLCSH+GCGR ETRP EFRRCSVCGTV
Sbjct: 241 FGCNVPAPEPHPVNLFLREWFESEGEVAARGGLRLCSHSGCGRAETRPHEFRRCSVCGTV 300

Query: 301 NYCSRGCQAQDWKLRHKVGCRPIEQWRNEAENDPGGVFAMVEEL 342
           NYCSRGCQAQDWK+RHK  C  +++WR+E  N+ G +F +VEE+
Sbjct: 301 NYCSRGCQAQDWKVRHKEECTTVQRWRDEDANNAGEMFDIVEEV 343

[Close]
BLAST of Moc06g00550 vs. ExPASy TrEMBL
Match: A0A5A7UPI5 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00550 PE=4 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 3.2e-159
Identity = 281/344 (81.69%), Postives = 307/344 (89.24%), Query Frame = 0 

Query: 1   MIPSKRPRTCRKPAADSDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLAL 60
           MI  KRPRT R   ADSDLFDVLPDDLLIHLL RLA+SASSPSDLLNLLLTCKRLNRL L
Sbjct: 1   MISVKRPRTRRNFTADSDLFDVLPDDLLIHLLCRLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  HPLVLSKAGPKAFAVKTENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASL 120
           HPLVLSKAGPKAFAV+ +NWC+S+HRFLKRCV+AGNSEASYTLGMIRFYCLRNRGSGASL
Sbjct: 61  HPLVLSKAGPKAFAVRMQNWCDSSHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180
           MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRRNTDEGRRLLIQANARELSSVLISSSRVCQQRHH---GGLLDLTASTSCLLLSD 240
           DGYGVR+N+DEGRRLL+QANAREL++VL+SSS + QQ+ H   G L DLTA T C LLSD
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSIWQQQRHNQSGNLPDLTA-TRCSLLSD 240

Query: 241 FGCNIPAPEPHPVNLFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTV 300
           FGCN+PAPEPHPVNLFLREWFE+E    AR GLRLCSH+GCGR ETRP EFRRCSVCGTV
Sbjct: 241 FGCNVPAPEPHPVNLFLREWFESEGEVAARGGLRLCSHSGCGRAETRPHEFRRCSVCGTV 300

Query: 301 NYCSRGCQAQDWKLRHKVGCRPIEQWRNEAENDPGGVFAMVEEL 342
           NYCSRGCQAQDWK+RHK  C  +++WR+E  N+   +F +VEE+
Sbjct: 301 NYCSRGCQAQDWKVRHKEECTTVQRWRDEDANNADEMFDIVEEV 343

[Close]
BLAST of Moc06g00550 vs. TAIR 10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 438.7 bits (1127), Expect = 6.2e-123
Identity = 212/323 (65.63%), Postives = 250/323 (77.40%), Query Frame = 0 

Query: 17  SDLFDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLALHPLVLSKAGPKAFAVK 76
           +DL D +PDDL+I +L +L S++  P+D +N+LLTCKRL  LA++P+VLS+  PKA AVK
Sbjct: 41  ADLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVK 100

Query: 77  TENWCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPALYSL 136
             NW E +HRFLKRCV+AG+ EA YTLGMIRFYCL+NRG+GASLMAKAAI SHAPALYSL
Sbjct: 101 AHNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSL 160

Query: 137 AVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRRNTDEGRRLL 196
           AVIQFNGSGGSK+DKDL+AGVALCARAAFLGHVDALRELGHCLQDGYGV +N  EGRR L
Sbjct: 161 AVIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFL 220

Query: 197 IQANARELSSVLIS-----SSRVCQQRHHGGLLDLTASTSCLLLSDFGCNIPAPEPHPVN 256
           +QANAREL++VL S     S+ +   +    ++      +C LLSDFGCN+PAPE HP N
Sbjct: 221 VQANARELAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPAN 280

Query: 257 LFLREWFETERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKL 316
            FL +WF          GLRLCSHAGCGRPETR  EFRRCSVCG VNYCSR CQA DWKL
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKL 340

Query: 317 RHKVGCRPIEQWRNEAENDPGGV 335
           RHK+ C P+++W  E +   G V
Sbjct: 341 RHKMDCAPVQRWLEEGDGGEGNV 363

[Close]
BLAST of Moc06g00550 vs. TAIR 10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger )

HSP 1 Score: 402.5 bits (1033), Expect = 4.9e-112
Identity = 202/304 (66.45%), Postives = 236/304 (77.63%), Query Frame = 0 

Query: 20  FDVLPDDLLIHLLRRLASSASSPSDLLNLLLTCKRLNRLALHPLVLSKAGPKAFAVKTEN 79
           F+ L DDL+I +LR+LA+SASSPSD L +L TCKRLNRL LHPLVLSKAG +  AV  E 
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 80  WCESAHRFLKRCVEAGNSEASYTLGMIRFYCLRNRGSGASLMAKAAIKSHAPALYSLAVI 139
           W +S+H+FLK CV AGN +ASY+LGMIRFYCL+N  SGASLMAKAAIKSHAPALYSL+VI
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 140 QFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQDGYGVRRNTDEGRRLLIQA 199
           QFNGSGGSK+DK+L+AGVALCAR+A+LGHVDALRELGHCLQDGYGV R+  EGRRLLIQA
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 200 NARELSSVLISSSRVCQQRHHGGLLDLTASTSCLLLSDFGCNIPAPEPHPVNLFLREWFE 259
           NAREL+  L S   +     +  L DL+              +P  E HPVN FL+EWF 
Sbjct: 202 NARELACSLRSYLSLKSGDENETLTDLSV-------------VPVQEIHPVNRFLKEWFS 261

Query: 260 TERRAMARQGLRLCSHAGCGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKLRHKVGCRP 319
           + R  +A +GLR+CSH GCGRPETR  EFRRCSVCG VNYCSRGCQA DW+ +HKV C P
Sbjct: 262 SGRVDLA-EGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHKVECTP 311

Query: 320 IEQW 324
           ++ W
Sbjct: 322 LDLW 311

[Close]
BLAST of Moc06g00550 vs. TAIR 10
Match: AT2G24640.1 (ubiquitin-specific protease 19 )

HSP 1 Score: 45.1 bits (105), Expect = 2.0e-04
Identity = 18/41 (43.90%), Postives = 24/41 (58.54%), Query Frame = 0 

Query: 278 CGRPETRPREFRRCSVCGTVNYCSRGCQAQDWKLRHKVGCR 319
           CG+  T     ++CS C +V YCS  CQ  DWK  HK+ C+
Sbjct: 67  CGKATT-----KKCSRCKSVRYCSAACQTSDWKSGHKLKCK 102

[Close]
BLAST of Moc06g00550 vs. TAIR 10
Match: AT1G17110.1 (ubiquitin-specific protease 15 )

HSP 1 Score: 43.1 bits (100), Expect = 7.6e-04
Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 0 

Query: 290 RCSVCGTVNYCSRGCQAQDWKLRHKVGCRPIEQWRNEAE 329
           RCS C +V YCS  CQ   W++ HK  C P+E   + +E
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVESCSSSSE 178

[Close]
BLAST of Moc06g00550 vs. TAIR 10
Match: AT1G17110.2 (ubiquitin-specific protease 15 )

HSP 1 Score: 43.1 bits (100), Expect = 7.6e-04
Identity = 17/39 (43.59%), Postives = 23/39 (58.97%), Query Frame = 0 

Query: 290 RCSVCGTVNYCSRGCQAQDWKLRHKVGCRPIEQWRNEAE 329
           RCS C +V YCS  CQ   W++ HK  C P+E   + +E
Sbjct: 140 RCSRCKSVRYCSGKCQIIHWRVAHKDECVPVESCSSSSE 178

The following BLAST results are available for this feature:
BLAST of Moc06g00550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516460.13.4e-16384.30F-box protein At1g67340-like [Cucurbita pepo subsp. pepo][more]
XP_022921747.11.3e-16284.30F-box protein At1g67340-like [Cucurbita moschata][more]
KAG7023063.11.3e-16284.01F-box protein [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6589385.11.3e-16284.01F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022987090.12.3e-15982.56F-box protein At1g67340-like [Cucurbita maxima][more]
BLAST of Moc06g00550 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FYF98.7e-12265.63F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1[more]
Q9FK276.9e-11166.45F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1[more]
Q094157.9e-0635.63SET domain-containing protein 14 OS=Caenorhabditis elegans OX=6239 GN=set-14 PE=... [more]
Q031621.0e-0534.67MYND-type zinc finger protein MUB1 OS=Saccharomyces cerevisiae (strain ATCC 2045... [more]
BLAST of Moc06g00550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E1B76.2e-16384.30F-box protein At1g67340-like OS=Cucurbita moschata OX=3662 GN=LOC111429904 PE=4 ... [more]
A0A6J1JFU91.1e-15982.56F-box protein At1g67340-like OS=Cucurbita maxima OX=3661 GN=LOC111484746 PE=4 SV... [more]
A0A5D3BGS71.9e-15981.69F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00550 ... [more]
A0A1S3CLL01.9e-15981.69F-box protein At1g67340-like OS=Cucumis melo OX=3656 GN=LOC103502322 PE=4 SV=1[more]
A0A5A7UPI53.2e-15981.69F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00550 ... [more]
BLAST of Moc06g00550 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G67340.16.2e-12365.63HCP-like superfamily protein with MYND-type zinc finger [more]
AT5G50450.14.9e-11266.45HCP-like superfamily protein with MYND-type zinc finger [more]
AT2G24640.12.0e-0443.90ubiquitin-specific protease 19 [more]
AT1G17110.17.6e-0443.59ubiquitin-specific protease 15 [more]
AT1G17110.27.6e-0443.59ubiquitin-specific protease 15 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 422..499
e-value: 6.3E-10
score: 38.9
NoneNo IPR availableGENE3D6.10.140.2220coord: 255..322
e-value: 7.2E-11
score: 43.6
NoneNo IPR availablePANTHERPTHR46758:SF9HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEINcoord: 1..330
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 78..200
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 271..323
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 417..502
e-value: 1.8E-5
score: 26.7
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 277..317
e-value: 2.2E-7
score: 30.9
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 275..317
score: 10.764384
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 24..211
e-value: 7.1E-18
score: 67.1
IPR044508F-box protein At5g50450/At1g67340-likePANTHERPTHR46758MYND DOMAIN-CONTAININGcoord: 1..330
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 421..504
e-value: 5.35482E-14
score: 66.5688
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 419..497
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 9..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc06g00550.1Moc06g00550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity