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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGCTGTGGGGGCTGA mRNA sequence ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGCTGTGGGGGCTGA Coding sequence (CDS) ATGGTGGGCTGTATTTGTTTTGGAGGTCGCAGCAAGAAGCAGAAGAGAAATCAAATTGCCGGTGGCGGTGACAAAGGCGGCCGTAAATTCAGACCGCCGCGAGGATACGGAGGTGGAACAACCGGCGGCGGAATGGGTGCTGGAAATGGTAATTTGACTGTTCTAACTGATGATGGTGGCGTCGCTTTGGCCGCCACGGTTGCTTTTACGATTGCTGCAGCTGCTGTCGCCGATAGTGGCGAATGCGGCGGCAGCTGTGGTGGCGGAGAATGCGGCGGCGGCGGCGGCTGTGGTGGTGGCTGTGGGGGCTGA Protein sequence MVGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTDDGGVALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGGCGG
Homology
BLAST of Moc05g32510 vs. NCBI nr
Match: XP_023528737.1 (loricrin-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20 Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0
Query: 2 VGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD-DGG 61
+ CICF G +K+K NQ GDKG RKFRPPRGY GGT GG GNGNLTVLTD DGG
Sbjct: 1 MSCICFRGPKEKKKSNQ--AHGDKGARKFRPPRGYTGGTAAGGSTTGNGNLTVLTDHDGG 60
Query: 62 VALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGC-GGGCGG 104
V LA+T F +AAAAV D+GE GGSCGGGECGG GGC GGGCGG
Sbjct: 61 VVLASTFGFAVAAAAVVDAGEHGGSCGGGECGGAGGCGGGGCGG 102
BLAST of Moc05g32510 vs. NCBI nr
Match: KAG6580518.1 (hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14 Identity = 61/100 (61.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query: 2 VGCICFGGRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD-DGG 61
+ CICF R K+++N GD G RKFRPPRGY GGT GNGNLTVLTD DGG
Sbjct: 55 MSCICF--RGPKEEKNSNQAHGDNGARKFRPPRGYSGGTAAAASTPGNGNLTVLTDHDGG 114
Query: 62 VALAATVAFTIAAAAVADSGECGGSCGGGECGGGGGCGGG 101
V LA+T F +AAAAV D+GE GG CGG GGGGCGGG
Sbjct: 115 VVLASTFGFAVAAAAVVDAGEHGGECGGAGGCGGGGCGGG 152
BLAST of Moc05g32510 vs. ExPASy TrEMBL
Match: A0A0A0LDL8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18 Identity = 64/94 (68.09%), Postives = 70/94 (74.47%), Query Frame = 0
Query: 4 CICFG-GRSKKQKRNQIAGGGDKGGRKFRPPRGYGGGTTGGGMGAGNGNLTVLTD--DGG 63
CICFG G+ KK+ N G KGGRKFRPPRG+GG T GG GAGNGNL VLTD DGG
Sbjct: 5 CICFGAGQKKKKSNNNNQTDGHKGGRKFRPPRGHGGRTGVGGSGAGNGNLAVLTDHHDGG 64
Query: 64 VALAATVAFTIAAAAVADSGECGGSCGGGECGGG 95
VA+ AT+ F +AAAAV D E GGSCGGGECGGG
Sbjct: 65 VAMVATLGFAVAAAAVVDVAEHGGSCGGGECGGG 98
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_023528737.1 | 2.5e-20 | 70.19 | loricrin-like [Cucurbita pepo subsp. pepo] | [more] |
| KAG6580518.1 | 1.6e-14 | 61.00 | hypothetical protein SDJN03_20520, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LDL8 | 1.1e-18 | 68.09 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733910 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 13..43 |
Relationships
The following mRNA feature(s) are a part of this gene:
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