Moc05g32370 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g32370
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Locationchr5: 24229072 .. 24229661 (-)
RNA-Seq ExpressionMoc05g32370
SyntenyMoc05g32370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCCTCTGCGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACTGGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTCAGTCCGTGCCAACAACAGCAGGGCTCGTGTCCCTTTTAGGGTTCAGGCCGCAAAGCTTCCGGCTGGAGTACACTGTCTATCCTCTTCAAATTTGTGAACTTTTCCCATTTCTGTTTCGCCTGTTGATAACTTTGTTTCCATCTGAAAAGCTTAGATAAATTCAGAATAATAAATTCATGTGGGCTAGCGAGTTACCTTTTTCTTTTCTTTTTCCAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATGGGCCTCGTTGGGATTTTCATAGTAGAGCTGGTGAGTTTTCCGTTAGGTTTCTATCTTTTACTTCTATATTCAAATTAGTGGGTTCTATTCATTTTTGTCTGATTTTTCAGATTTTGGACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGTAAAGGCCTAGATCTTCCTCTATGA

mRNA sequence

ATGGCGTCTTCCTCTGCGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACTGGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTCAGTCCGTGCCAACAACAGCAGGGCTCGTGTCCCTTTTAGGGTTCAGGCCGCAAAGCTTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATGGGCCTCGTTGGGATTTTCATAGTAGAGCTGATTTTGGACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGTAAAGGCCTAGATCTTCCTCTATGA

Coding sequence (CDS)

ATGGCGTCTTCCTCTGCGATGTTATCATCTTCTCTTCTTCCGGCCAGAGCTCCGACTGGTAACCGTCAAGACGGCCGACTCTGTCTCTTTCAAATTGGTTCAGTCCGTGCCAACAACAGCAGGGCTCGTGTCCCTTTTAGGGTTCAGGCCGCAAAGCTTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCTGCATGATGGGCCTCGTTGGGATTTTCATAGTAGAGCTGATTTTGGACAAAGGAATACTTCAGGTGATTGGAGTTGATGTTGGTAAAGGCCTAGATCTTCCTCTATGA

Protein sequence

MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL
Homology
BLAST of Moc05g32370 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 230.3 bits (586), Expect = 8.5e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

BLAST of Moc05g32370 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 5.3e-51
Identity = 107/119 (89.92%), Postives = 116/119 (97.48%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASSSA+LSSSLLPARAP  ++QDGRLCLFQIGSVRANNSR+RVPFRVQAAK PAGVELP
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIGSVRANNSRSRVPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAE+WNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 119

BLAST of Moc05g32370 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 2.5e-48
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

BLAST of Moc05g32370 vs. NCBI nr
Match: XP_023526506.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPA AP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPASAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

BLAST of Moc05g32370 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.0e-41
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60
           MASSS +L SSL PARA T N QD R CLFQIG SVRAN+SRAR  FR+Q AAK PAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

BLAST of Moc05g32370 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.1e-26
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 0

Query: 4   SSAMLSSSLLPARAPTGNRQDGR---LCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 63
           SS+ LSSSL    +       GR   LC           +R + PF V+AAKLP GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACM+GL+G FIVELIL+KGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

BLAST of Moc05g32370 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.1e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

BLAST of Moc05g32370 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

BLAST of Moc05g32370 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

BLAST of Moc05g32370 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.9e-42
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60
           MASSS +L SSL PARA T N QD R CLFQIG SVRAN+SRAR  FR+Q AAK PAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

BLAST of Moc05g32370 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.4e-41
Identity = 101/121 (83.47%), Postives = 107/121 (88.43%), Query Frame = 0

Query: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQ-AAKLPAGVE 60
           MASSS +L SSL PARA T N+QDGR  LFQIG SVRANNSRAR  FRVQ AAK PAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 120
           LPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+G F+VELIL+K ILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120

BLAST of Moc05g32370 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.7e-27
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 0

Query: 4   SSAMLSSSLLPARAPTGNRQDGR---LCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 63
           SS+ LSSSL    +       GR   LC           +R + PF V+AAKLP GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 120
           K +PK +  FLGFT+TAEIWNSRACM+GL+G FIVELIL+KGIL++IGV++GKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022145630.18.5e-57100.00light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia][more]
XP_038905156.15.3e-5189.92light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida][more]
XP_022934608.12.5e-4885.71light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >... [more]
XP_023526506.11.2e-4784.87light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp.... [more]
XP_004137791.11.0e-4182.64light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN... [more]
Match NameE-valueIdentityDescription
O812088.1e-2656.30Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian... [more]
Match NameE-valueIdentityDescription
A0A6J1CV104.1e-57100.00light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia... [more]
A0A6J1J0W81.2e-4885.71light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX... [more]
A0A6J1F8511.2e-4885.71light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ... [more]
A0A0A0LAI04.9e-4282.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1[more]
A0A5A7TRS85.4e-4183.47High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
Match NameE-valueIdentityDescription
AT5G02120.15.7e-2756.30one helix protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14154:SF51LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTICcoord: 1..116
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 1..116
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 59..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g32370.1Moc05g32370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane