Moc05g26380 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g26380
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 18862743 .. 18866910 (-)
RNA-Seq Expression	Moc05g26380
Synteny	Moc05g26380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTTGGTCGCCGGAAGAAATGGAAGATTGGTGTGTGAGAGAGGGTTCTTTTTTGTGTGAGAGGGAGTTTCAAAATCGAGGGTTTCATGTGGGGAAAATTGGGGGAAATGAGAAGAGGGGTATTTACGACTTTTCACCTTTAAAAAATCCTACAATTCTTCAAATGAAAAGATCATCCTCAATCTCTTTAACCCTATTAGAGTTGTCCTACTTTTAGCAATTCCCCTAATAAAATATCATAAAACATAAAGCTAAAACAAATGGATAAATAAAAAAATAACTTTTAGGAGCGCAAAAAAAATATGAAACTAATGAAAACTCATGTGGATGCAAAATGTTGGAGAAATATGCATAGAAAACTTAAGGAAACATAAAATTAAAAATCCAAACTCAACGTAACGTTGTTTCCTACTCACAGTATTTAAGTACTCATACAGAGGAAAAGATAGAATTTTGAGGGATGATTTTTCTGTATATCAAAACTGAGAATAACCACGTATTTATATCTTTTTATGTAAGGTTATGTCTTTTGATAAAAGGACATAACCTTTACAAAAGACACTTCAGTTCATGAAAAATTGTGATTCTTTCATTTTTAACAAAAATAATTTTATTCAACAAATATTTATTTTTGGGAGAAATGTACGTTTCGTCACCATAGATATCCTTTGTGACGCCTCAATTTTCTTCGGAATAGATGTATTCTGTGACAAAAACAATTTCGCAGTAAAGACCTACCCGATGGGAATTTGCCGACAATTGTTGTGAGTAAATTTTTTCGTCGAGTAACCATTTTGCAGATGAAATCTGTAGCTACGACGACGAATTTATGCGTCACGGAAACTTAAAATTATTCCCTATAATATTAGGGTCTCTTTTTGTTTTGCGCCGCACACACCCACCCCTCCTCCCTCACTTCAACCCTCAACGTACCCACCTCTCTTTCACGCTCGGACTCTCAACCTCGGTGATGACACCCACCCCTCTCTTTGGCTCTCAATGTCGACCCTCCTTCCTCCGTATTTTAACACAACACCTTTGTCTCCGTTTTTTACTTTCCCCTACGTATGCCCTTCTCTCACATTCTTCTTCATGCATGTCTCTCTCTCAAATATGAGATCTCTTCTTTTTCAGCCCCTTAGGTATGCTTTATCTTATTGGTCTATCTCCCTCTCAATCTGAGATTTCTCAATCATTTCTTCTTAGTTCTTGGTATTGTTTAGATAGCTCATTAATATACTCCCCATCTATATGGTTGTTTTGTTGTTTATTCTTGTTGAGTTTGTTGTAACTCATTTGAGGTAAATTATTGAGTTTTTGTTATACTAGTAGTATTCTTGTTGGGTTTGTTGTAACTATTTTTAGGTAGTTTTTGTTATACTAGTAGTAGCCGCACATATATAATGCTCCTTTGTATTCATTTAGAAAGAAAGAAAAATGAAAGGGAATACTTTTCTCTTGTAAAAACAAATTTTTCTGATTCTCCATTTATGTTTTCAGGGTATCAGAGCTTCGTCGCAAGACTTCGATCTTTACAAATTTCCCTAAATCTAAGGAGATTATCTTCTCTTCTCTTCTTTAGTCTTGATTTTTGTTTTGGTTCATAATCACGATGGATTTATCTGAGAATGTTGGAAGTCAAACGAATCAGGCTATTAATCTAGAAAACAAAATTTATACAGTGAACTTGAATGATGATAATTTCCTCCATTGGAAATTTCAAGTCCTAACGGCACTCGAAGGTTATGGTCTTGAATCACACATTGATAACTCGCCTAAACCTCCTTCTCAATTTCTCGAGGTTAGTAATGATTCTTCAATTACAGCAAAGCCTAATCCTTATTTTATCAAATAGAAGAAACAGGATAAGTTGATTTTCTCGTGGTTGCTTGGATCCATGATTGAGGACATTTTAGAACATATGTTACATTGCCAATCAACAAGAGATATATGGAGTTGTTTGCTTCAAATTTACACCTCTCACAATCTTGCTTGGGTAATGAGAATTAAGTCAAAATTGCATAATTTAAAAAAGGGTGGTTCTTCTCTAAAGGAACATTTTTTTCAAATTAAAAAGTGTGTTGATGCTCTTGCTTCAGTCGGCAAACAAGTTTCTCCTGTGAAGATCACATTGTGTATATTTTGTCTGGTCTTGGATCTGAATTTGAGGCTATGGTTTCGGTAATTTCAGCTAAGTCTGGTCCACAATCTGTTCAAGAAGTGATGGCTCTACTTCTTACACAAGAAAATAGGAATGAGAGCAAGTTACAATTGGTGAACTCTGATGGTTCTTCCCCTTCAGCACATGTTGCTATACATACTATCCACTCTGGAAAAGAAAATGAAATTCAGCACCATCCACATGCATATCAATCTAGTTCAGGCACTAATAATTGAGGGTCGCAATGGTCGTGGAGGAAAGTTCTGGAACAATAGAAAAATACAGTGCCAACTTTGTGGCAAGTTTGGTCACAACCTCTAAAATGTTACCCTCGGTTTGATCCACGCTTTCAAGGTCCCAACAATGGTGCTAACTTCTTCAGTTCAACACCTCCGGCTTCCACCTTCAGTCATGGACATCCTCAAATGTCTGCTTTACTCACTGCCCCATATATCAATCGAGACAGTAATTGGTACCCGGATTCTGGTGCAACCAACCATCTTACAAACAACTTCAATAATCTGTCTGTAGGCACAGAATATCATGGAGCTAACCAGGTTCAAGTCGGTAATGGTGCAGGTTTGCCAATCTCTCATTCTGGTCACTCTTCGTTTATCACACCCTCAAATCATGTTCTTCACTTAAACAATCTCCTTCATGTTCCTCAAATAACCAAAAACTTGATTAGTGTGAGTCAATTTGCTAGAGATAACTCTTATCTTTTTTGAATTTCACCCTCTTTGTTGTTATGTGAAGGATTCAATCACTGGCAAGGTGCTTCTTCAAGGAACTCTACATGACGGGTTGTACAGGTTCAATCTTTCCACCTCCTCCGATTTGTCTTGTGCTCGCAGTCCTTCTCAAGCTTTAACAACTACTAGTTCTCTTGTTCCTTCTAATTCTTCTGTTGCTCCTATGATTTGTGGCATAGGAGACTTGGACATCCTGCCTTCCTCGTTGTTAATAAAATTTTGAGACTTTATAAACCATCTTTGCCATCTAATTTAAGTTTAAAATTCTACAATGCTTGTGCTGTGGGAAAATCTCATGCTTTTCCTTTTAGTCCTTCACTTACAACTTATACTGCACCATTACAATTAATTGTTGATGATTTATGGAGTCTTGCTTATAAATCCTCTCGTAATGGTTTTCGTTATTACATTAGCTTTGTTGATATGTTCTCCCGTTATAATTGGATTTATTTTCTTCAATCTAAGTCTGATGCTTTTCGCACTTTTATTACCTTTAAAACCATGATTGAAAAACTTCTTGGGCTGTCCATACTTTGCTTCCAGTCCGATGGTGGTGGTGAATTTAACGTTTACACCCTATCTTCAATCTCAAGGCATTATACCTCTCAACAAAATGGTGTTGTTCAGCGAAAACATCGCCACATTGTGGATACCGGTCTTACTTTACTCTCTCAAGCCTCTATGCCTCTCCCCTTCTGGGATGATGCTTTCTCCACAGCTGTTCATCTTATCAACCGATTGCCCTCTACAGTTCTTGATGGTATGAGTCCTATGGAAAAGCTTTTTCGCCAACAACCCGATTATTCTTCCTTGAAAGTTTTTTAGTGTAGTTGTTTTCCTTGTTTGTGCTCTTATAACACTCATAAACTTGATTTTCATTCACAACAGTGCACCTTTCTTGGCTATAGTAGCATACACAAGGGATATAAATGTTTGTCCTCCACTGGAAAGTTTTTGTGTCACGCCATGTTATTTTTTATGAAACCTTGTTTCCTTTTGAAGGTCATACCTCCCCGTCCACTTCCAAGAATGCAGGTGCTATAGTTCAAACTTTACCTTTTATGTCTCCGTCGTTGTCCCATTTACCCAATCCTTGTCCTCCTATTGTACTTGCCCCTCTTGCACCTATCACTGCTATACCTCCCTCTGATATTTTTGCTTCTACTAATGGACTTTTGTCTACTGATGTGCATTTTAATACCCATTTGCATGCTCATACTTCAATGTTTGCACATGTGGTACCAGCATAG

mRNA sequence

ATGGAAGCTTGGTCGCCGGAAGAAATGGAAGATTGTCGGCAAACAAGTTTCTCCTGTGAAGATCACATTGTGTATATTTTGTCTGGTCTTGGATCTGAATTTGAGGCTATGGTTTCGGTAATTTCAGCTAAGTCTGGTCCACAATCTGTTCAAGAAGTGATGGCTCTACTTCTTACACAAGAAAATAGGAATGAGAGCAAGTTACAATTGGTGAACTCTGATGGTTCTTCCCCTTCAGCACATGATTCAATCACTGGCAAGGTGCTTCTTCAAGGAACTCTACATGACGGGTTGTACAGGTTCAATCTTTCCACCTCCTCCGATTTGTCTTGTGCTCGCAGTCCTTCTCAAGCTTTAACAACTACTAGTTCTCTTGTTCCTTCTAATTCTTCTGTTGCTCCTATGATTTGTGCTATAGTTCAAACTTTACCTTTTATGTCTCCGTCGTTGTCCCATTTACCCAATCCTTGTCCTCCTATTGTACTTGCCCCTCTTGCACCTATCACTGCTATACCTCCCTCTGATATTTTTGCTTCTACTAATGGACTTTTGTCTACTGATGTGCATTTTAATACCCATTTGCATGCTCATACTTCAATGTTTGCACATGTGGTACCAGCATAG

Coding sequence (CDS)

ATGGAAGCTTGGTCGCCGGAAGAAATGGAAGATTGTCGGCAAACAAGTTTCTCCTGTGAAGATCACATTGTGTATATTTTGTCTGGTCTTGGATCTGAATTTGAGGCTATGGTTTCGGTAATTTCAGCTAAGTCTGGTCCACAATCTGTTCAAGAAGTGATGGCTCTACTTCTTACACAAGAAAATAGGAATGAGAGCAAGTTACAATTGGTGAACTCTGATGGTTCTTCCCCTTCAGCACATGATTCAATCACTGGCAAGGTGCTTCTTCAAGGAACTCTACATGACGGGTTGTACAGGTTCAATCTTTCCACCTCCTCCGATTTGTCTTGTGCTCGCAGTCCTTCTCAAGCTTTAACAACTACTAGTTCTCTTGTTCCTTCTAATTCTTCTGTTGCTCCTATGATTTGTGCTATAGTTCAAACTTTACCTTTTATGTCTCCGTCGTTGTCCCATTTACCCAATCCTTGTCCTCCTATTGTACTTGCCCCTCTTGCACCTATCACTGCTATACCTCCCTCTGATATTTTTGCTTCTACTAATGGACTTTTGTCTACTGATGTGCATTTTAATACCCATTTGCATGCTCATACTTCAATGTTTGCACATGTGGTACCAGCATAG

Protein sequence

MEAWSPEEMEDCRQTSFSCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKLQLVNSDGSSPSAHDSITGKVLLQGTLHDGLYRFNLSTSSDLSCARSPSQALTTTSSLVPSNSSVAPMICAIVQTLPFMSPSLSHLPNPCPPIVLAPLAPITAIPPSDIFASTNGLLSTDVHFNTHLHAHTSMFAHVVPA

Homology

[Close]

BLAST of Moc05g26380 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-09
Identity = 38/64 (59.38%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKLQLVNSDGSS 77
           S EDHI++IL+GLG EF+A++SVI+A++ PQ++QEV +LLL QE RNE    L+NSDGS 
Sbjct: 177 STEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNER--NLINSDGSL 236

Query: 78  PSAH 82
           PS +
Sbjct: 237 PSVN 238

[Close]

BLAST of Moc05g26380 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-08
Identity = 34/51 (66.67%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKL 69
           S +DHI+YIL+GLGS++++M+SVISA++   SVQEVM+LLLTQE++NESKL
Sbjct: 178 SSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL 228

[Close]

BLAST of Moc05g26380 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-08
Identity = 34/51 (66.67%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKL 69
           S +DHI+YIL+GLGS++++M+SVISA++   SVQEVM+LLLTQE++NESKL
Sbjct: 178 SSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL 228

[Close]

BLAST of Moc05g26380 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-07
Identity = 31/51 (60.78%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKL 69
           S +DHI+YIL GLG ++++M+S+ISA++   S+QEVM+LLLTQE++NESKL
Sbjct: 173 SSDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKL 223

[Close]

BLAST of Moc05g26380 vs. NCBI nr
Match: KAA0045111.1 (putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK23627.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-06
Identity = 34/64 (53.12%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKLQLVNSDGSS 77
           S +DHI+YIL+GLG+E+++M+SVISA++   SVQ+VM+LLLTQE++ ESK   + S+ S 
Sbjct: 313 STDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIESK---ITSEVSL 372

Query: 78  PSAH 82
           P+ +
Sbjct: 373 PTVN 373

[Close]

BLAST of Moc05g26380 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 38/64 (59.38%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKLQLVNSDGSS 77
           S EDHI++IL+GLG EF+A++SVI+A++ PQ++QEV +LLL QE RNE    L+NSDGS 
Sbjct: 177 STEDHIMHILAGLGPEFDAIISVITARNMPQTLQEVCSLLLQQEGRNER--NLINSDGSL 236

Query: 78  PSAH 82
           PS +
Sbjct: 237 PSVN 238

[Close]

BLAST of Moc05g26380 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-09
Identity = 34/51 (66.67%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKL 69
           S +DHI+YIL+GLGS++++M+SVISA++   SVQEVM+LLLTQE++NESKL
Sbjct: 178 SSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL 228

[Close]

BLAST of Moc05g26380 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-09
Identity = 34/51 (66.67%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKL 69
           S +DHI+YIL+GLGS++++M+SVISA++   SVQEVM+LLLTQE++NESKL
Sbjct: 178 SSDDHILYILAGLGSDYQSMISVISARTDSPSVQEVMSLLLTQESQNESKL 228

[Close]

BLAST of Moc05g26380 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.8e-07
Identity = 31/51 (60.78%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKL 69
           S +DHI+YIL GLG ++++M+S+ISA++   S+QEVM+LLLTQE++NESKL
Sbjct: 173 SSDDHILYILVGLGYDYQSMISIISARTDSPSIQEVMSLLLTQESQNESKL 223

[Close]

BLAST of Moc05g26380 vs. ExPASy TrEMBL
Match: A0A5A7TUB3 (Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001440 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 34/64 (53.12%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 18  SCEDHIVYILSGLGSEFEAMVSVISAKSGPQSVQEVMALLLTQENRNESKLQLVNSDGSS 77
           S +DHI+YIL+GLG+E+++M+SVISA++   SVQ+VM+LLLTQE++ ESK   + S+ S 
Sbjct: 313 STDDHILYILAGLGNEYQSMISVISARTDSPSVQDVMSLLLTQESQIESK---ITSEVSL 372

Query: 78  PSAH 82
           P+ +
Sbjct: 373 PTVN 373

The following BLAST results are available for this feature:

BLAST of Moc05g26380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	3.9e-09	59.38	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0048297.1	2.0e-08	66.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	2.0e-08	66.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0053143.1	3.7e-07	60.78	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0045111.1	1.1e-06	53.13	putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa] >TYK236...	[more]

BLAST of Moc05g26380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g26380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	1.9e-09	59.38	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7U233	9.5e-09	66.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	9.5e-09	66.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UB21	1.8e-07	60.78	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TUB3	5.2e-07	53.13	Putative glutathione S-transferase isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Moc05g26380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g26380.1	Moc05g26380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006749	glutathione metabolic process
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding