Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACCGACTCCCCAAAGCTACAAGCCCCCCTAATCAATTTTATTTGGAAAGACTCTATTCCGAAGAAGGTGAAGGTTTTTCTTTGGTCTTTAGCTTACCGAGCTCTAAACACTTCCGAGAGACTTCAGAAGAAATGCCCAAATTGGTCTATTTCCCAGTCCGTGTGTTGCCTTTGTCTAAGGGAAGCAGAATCTTTAGATCACTTGTTTCTACATTGTACGTTTGCTTCTAAAGATTGGCAGATTCTGTTTGAGATTTTCGGGTTTGTTGGTTGTATGCCGAGAAAGGTCGAGGATTGGATGATGGAAAGCTTTGCTGGTGGGCATCTCAAAGGAAAGGCATATTTTTTGTGGAAGTGTGCTTTTCGAGCGCTTCTTTGGAACCTATGGATGGGAAGGAATATTCGCTCTTTTGATGATAAGTCCAAGTCTTTTGATTCTTTTTGTAATAGTCTACATATTACAGCCTCTTGGTGGTGCCATATGAATACGAAATTCTTTTGTAACTACAACCTCTCCATGATCCTTCAAGATTGGAGAGCGTTGATTCGTTAG
mRNA sequence
ATGGACACCGACTCCCCAAAGCTACAAGCCCCCCTAATCAATTTTATTTGGAAAGACTCTATTCCGAAGAAGGTGAAGGTTTTTCTTTGGTCTTTAGCTTACCGAGCTCTAAACACTTCCGAGAGACTTCAGAAGAAATGCCCAAATTGGTCTATTTCCCAGTCCGTGTGTTGCCTTTGTCTAAGGGAAGCAGAATCTTTAGATCACTTGTTTCTACATTGTACGTTTGCTTCTAAAGATTGGCAGATTCTGTTTGAGATTTTCGGGTTTGTTGGTTGTATGCCGAGAAAGGTCGAGGATTGGATGATGGAAAGCTTTGCTGGTGGGCATCTCAAAGGAAAGGCATATTTTTTGTGGAAGTGTGCTTTTCGAGCGCTTCTTTGGAACCTATGGATGGGAAGGAATATTCGCTCTTTTGATGATAAGTCCAAGTCTTTTGATTCTTTTTGTAATAGTCTACATATTACAGCCTCTTGGTGGTGCCATATGAATACGAAATTCTTTTGTAACTACAACCTCTCCATGATCCTTCAAGATTGGAGAGCGTTGATTCGTTAG
Coding sequence (CDS)
ATGGACACCGACTCCCCAAAGCTACAAGCCCCCCTAATCAATTTTATTTGGAAAGACTCTATTCCGAAGAAGGTGAAGGTTTTTCTTTGGTCTTTAGCTTACCGAGCTCTAAACACTTCCGAGAGACTTCAGAAGAAATGCCCAAATTGGTCTATTTCCCAGTCCGTGTGTTGCCTTTGTCTAAGGGAAGCAGAATCTTTAGATCACTTGTTTCTACATTGTACGTTTGCTTCTAAAGATTGGCAGATTCTGTTTGAGATTTTCGGGTTTGTTGGTTGTATGCCGAGAAAGGTCGAGGATTGGATGATGGAAAGCTTTGCTGGTGGGCATCTCAAAGGAAAGGCATATTTTTTGTGGAAGTGTGCTTTTCGAGCGCTTCTTTGGAACCTATGGATGGGAAGGAATATTCGCTCTTTTGATGATAAGTCCAAGTCTTTTGATTCTTTTTGTAATAGTCTACATATTACAGCCTCTTGGTGGTGCCATATGAATACGAAATTCTTTTGTAACTACAACCTCTCCATGATCCTTCAAGATTGGAGAGCGTTGATTCGTTAG
Protein sequence
MDTDSPKLQAPLINFIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHCTFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWMGRNIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDWRALIR
Homology
BLAST of Moc05g26050 vs. NCBI nr
Match:
TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])
HSP 1 Score: 132.1 bits (331), Expect = 4.9e-27
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 0
Query: 1 MDTDSPKLQAPLINFIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLC 60
M + K +N IWK I KKVK FLWSLAYR+LN +LQ+K PN S+S S+C LC
Sbjct: 216 MTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLC 275
Query: 61 LREAESLDHLFLHCTFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKA 116
L+EAE+ DHLFLHC FA K W +F++F C+P+K++D M + GG GKA
Sbjct: 276 LKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKIDDGMKDGLTGGSFGGKA 330
BLAST of Moc05g26050 vs. NCBI nr
Match:
XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])
HSP 1 Score: 129.0 bits (323), Expect = 4.1e-26
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 16 IWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHCT 75
+WK P++V VF W L LNT++ +QKK P+ ++ S CCLC + E DHLF HC
Sbjct: 32 LWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCY 91
Query: 76 FASKDWQILFEIFGFVGCMPRKVEDWMMESFAG-GHLKGKAYFLWKCAFRALLWNLWMGR 135
FASK W +LF F C K D + + G HL FLW +ALL LW R
Sbjct: 92 FASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFER 151
Query: 136 NIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDWRALI 185
N R F++K + FD S AS WC + F +++ SMI +W A I
Sbjct: 152 NSRLFEEKRRLFDESFYSAKFKASLWCSL-VDSFLHHSPSMIYANWGAFI 200
BLAST of Moc05g26050 vs. NCBI nr
Match:
RVW34900.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0
Query: 15 FIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHC 74
F+WK +P KVK F+W +A++ +NT++ LQ + P+ +IS +C LC+ + ES DHLFLHC
Sbjct: 380 FVWKSQVPFKVKAFIWLVAHKKVNTNDLLQLRRPHKAISPDICKLCMEQGESADHLFLHC 439
Query: 75 TFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWMGR 134
+ W LF++ P+ + D M ++ G + LW+ A AL+W +W R
Sbjct: 440 SVTLGLWHRLFQLAKMDWVPPKSISDMMFINYKGFGKSKRGVILWQNASIALIWVVWRER 499
Query: 135 NIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDW 181
N+R F+DK+++ + +S+H AS+W + F L+++ DW
Sbjct: 500 NVRIFEDKARNSGNLWDSIHFLASFWAFCSAG-FKGTPLNVLQLDW 544
BLAST of Moc05g26050 vs. NCBI nr
Match:
RVW89898.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0
Query: 15 FIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHC 74
F+WK +P KVK F+W +A++ +NT++ LQ + P+ +IS +C LC+ + ES DHLFLHC
Sbjct: 203 FVWKSQVPFKVKAFIWLVAHKKVNTNDLLQLRRPHKAISPDICKLCMEQGESADHLFLHC 262
Query: 75 TFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWMGR 134
+ W LF++ P+ + D M ++ G + LW+ A AL+W +W R
Sbjct: 263 SVTLGLWHRLFQLAKMDWVPPKSISDMMFINYKGFGKSKRGVILWQNASIALIWVVWRER 322
Query: 135 NIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDW 181
N+R F+DK+++ + +S+H AS+W + F L+++ DW
Sbjct: 323 NVRIFEDKARNSGNLWDSIHFLASFWAFCSAG-FKGTPLNVLQLDW 367
BLAST of Moc05g26050 vs. NCBI nr
Match:
RVW26228.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 127.1 bits (318), Expect = 1.6e-25
Identity = 59/171 (34.50%), Postives = 100/171 (58.48%), Query Frame = 0
Query: 13 INFIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFL 72
I F+WK +P KVK F+W +A++ +NT++ LQ + P+ ++S +C LC+ + ES DHLFL
Sbjct: 752 ILFVWKSQVPFKVKAFVWLVAHKKVNTNDLLQLRRPHKALSPDICKLCMEQGESADHLFL 811
Query: 73 HCTFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWM 132
HC+ W LF++ P+ + D M ++ G + LW+ A AL+W +W
Sbjct: 812 HCSVTLGLWHRLFQLAKMDWVPPKSISDMMFINYKGFGKSKRGLVLWQNACIALIWVVWR 871
Query: 133 GRNIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDWRAL 184
RN R F+DK+++ ++ +S+H AS+W + F L+++ DW A+
Sbjct: 872 ERNARIFEDKARNSENLWDSIHFLASFWAFCSAG-FKGIPLNILQLDWLAV 921
BLAST of Moc05g26050 vs. ExPASy TrEMBL
Match:
A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 2.4e-27
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 0
Query: 1 MDTDSPKLQAPLINFIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLC 60
M + K +N IWK I KKVK FLWSLAYR+LN +LQ+K PN S+S S+C LC
Sbjct: 216 MTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLC 275
Query: 61 LREAESLDHLFLHCTFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKA 116
L+EAE+ DHLFLHC FA K W +F++F C+P+K++D M + GG GKA
Sbjct: 276 LKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKIDDGMKDGLTGGSFGGKA 330
BLAST of Moc05g26050 vs. ExPASy TrEMBL
Match:
A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)
HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 68/170 (40.00%), Postives = 90/170 (52.94%), Query Frame = 0
Query: 16 IWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHCT 75
+WK P++V VF W L LNT++ +QKK P+ ++ S CCLC + E DHLF HC
Sbjct: 32 LWKTKSPRRVNVFCWILFQGKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCY 91
Query: 76 FASKDWQILFEIFGFVGCMPRKVEDWMMESFAG-GHLKGKAYFLWKCAFRALLWNLWMGR 135
FASK W +LF F C K D + + G HL FLW +ALL LW R
Sbjct: 92 FASKCWNLLFHQFNVDWCFDLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFER 151
Query: 136 NIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDWRALI 185
N R F++K + FD S AS WC + F +++ SMI +W A I
Sbjct: 152 NSRLFEEKRRLFDESFYSAKFKASLWCSL-VDSFLHHSPSMIYANWGAFI 200
BLAST of Moc05g26050 vs. ExPASy TrEMBL
Match:
A0A438CSQ5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_842 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 7.6e-26
Identity = 59/171 (34.50%), Postives = 100/171 (58.48%), Query Frame = 0
Query: 13 INFIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFL 72
I F+WK +P KVK F+W +A++ +NT++ LQ + P+ ++S +C LC+ + ES DHLFL
Sbjct: 752 ILFVWKSQVPFKVKAFVWLVAHKKVNTNDLLQLRRPHKALSPDICKLCMEQGESADHLFL 811
Query: 73 HCTFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWM 132
HC+ W LF++ P+ + D M ++ G + LW+ A AL+W +W
Sbjct: 812 HCSVTLGLWHRLFQLAKMDWVPPKSISDMMFINYKGFGKSKRGLVLWQNACIALIWVVWR 871
Query: 133 GRNIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDWRAL 184
RN R F+DK+++ ++ +S+H AS+W + F L+++ DW A+
Sbjct: 872 ERNARIFEDKARNSENLWDSIHFLASFWAFCSAG-FKGIPLNILQLDWLAV 921
BLAST of Moc05g26050 vs. ExPASy TrEMBL
Match:
A0A438DHG1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_166 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 7.6e-26
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0
Query: 15 FIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHC 74
F+WK +P KVK F+W +A++ +NT++ LQ + P+ +IS +C LC+ + ES DHLFLHC
Sbjct: 380 FVWKSQVPFKVKAFIWLVAHKKVNTNDLLQLRRPHKAISPDICKLCMEQGESADHLFLHC 439
Query: 75 TFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWMGR 134
+ W LF++ P+ + D M ++ G + LW+ A AL+W +W R
Sbjct: 440 SVTLGLWHRLFQLAKMDWVPPKSISDMMFINYKGFGKSKRGVILWQNASIALIWVVWRER 499
Query: 135 NIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDW 181
N+R F+DK+++ + +S+H AS+W + F L+++ DW
Sbjct: 500 NVRIFEDKARNSGNLWDSIHFLASFWAFCSAG-FKGTPLNVLQLDW 544
BLAST of Moc05g26050 vs. ExPASy TrEMBL
Match:
A0A438HZK6 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_869 PE=4 SV=1)
HSP 1 Score: 127.1 bits (318), Expect = 7.6e-26
Identity = 58/166 (34.94%), Postives = 97/166 (58.43%), Query Frame = 0
Query: 15 FIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCLREAESLDHLFLHC 74
F+WK +P KVK F+W +A++ +NT++ LQ + P+ +IS +C LC+ + ES DHLFLHC
Sbjct: 203 FVWKSQVPFKVKAFIWLVAHKKVNTNDLLQLRRPHKAISPDICKLCMEQGESADHLFLHC 262
Query: 75 TFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHLKGKAYFLWKCAFRALLWNLWMGR 134
+ W LF++ P+ + D M ++ G + LW+ A AL+W +W R
Sbjct: 263 SVTLGLWHRLFQLAKMDWVPPKSISDMMFINYKGFGKSKRGVILWQNASIALIWVVWRER 322
Query: 135 NIRSFDDKSKSFDSFCNSLHITASWWCHMNTKFFCNYNLSMILQDW 181
N+R F+DK+++ + +S+H AS+W + F L+++ DW
Sbjct: 323 NVRIFEDKARNSGNLWDSIHFLASFWAFCSAG-FKGTPLNVLQLDW 367
BLAST of Moc05g26050 vs. TAIR 10
Match:
AT3G09510.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 46.2 bits (108), Expect = 3.3e-05
Identity = 32/91 (35.16%), Postives = 41/91 (45.05%), Query Frame = 0
Query: 3 TDSPKLQAPLIN----------FIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSI 62
T P P IN IW I K+K FLW +AL T+ERL + I
Sbjct: 139 THDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTR--GMRI 198
Query: 63 SQSVCCLCLREAESLDHLFLHCTFASKDWQI 84
S C C RE ES++H C FA+ W++
Sbjct: 199 DPS-CPRCHRENESINHALFTCPFATMAWRL 226
BLAST of Moc05g26050 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 42.0 bits (97), Expect = 6.2e-04
Identity = 36/140 (25.71%), Postives = 53/140 (37.86%), Query Frame = 0
Query: 2 DTDSPKLQAPLINFIWKDSIPKKVKVFLWSLAYRALNTSERLQKKCPNWSISQSVCCLCL 61
+ P L P+ IWK K++ FLW +L + L + + +S C C
Sbjct: 244 EVSEPSLN-PIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLS---KESACIRCP 303
Query: 62 REAESLDHLFLHCTFASKDWQILFEIFGFVGCMPRKVEDWMMESFAGGHL---KGKAYFL 121
E+++HL CTFA W I G +W + + G
Sbjct: 304 SCKETVNHLLFKCTFARLTWAISSIPIPLGG-------EWADSIYVNLYWVFNLGNGNPQ 363
Query: 122 WKCAFRA---LLWNLWMGRN 136
W+ A + LLW LW RN
Sbjct: 364 WEKASQLVPWLLWRLWKNRN 372
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK31299.1 | 4.9e-27 | 51.30 | protein FAM91A1 [Cucumis melo var. makuwa] | [more] |
XP_022153214.1 | 4.1e-26 | 40.00 | uncharacterized protein LOC111020765 [Momordica charantia] | [more] |
RVW34900.1 | 1.6e-25 | 34.94 | putative ribonuclease H protein [Vitis vinifera] | [more] |
RVW89898.1 | 1.6e-25 | 34.94 | putative ribonuclease H protein [Vitis vinifera] | [more] |
RVW26228.1 | 1.6e-25 | 34.50 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E632 | 2.4e-27 | 51.30 | Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059... | [more] |
A0A6J1DIE2 | 2.0e-26 | 40.00 | uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A438CSQ5 | 7.6e-26 | 34.50 | Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... | [more] |
A0A438DHG1 | 7.6e-26 | 34.94 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_166 P... | [more] |
A0A438HZK6 | 7.6e-26 | 34.94 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_869 P... | [more] |
Match Name | E-value | Identity | Description | |
AT3G09510.1 | 3.3e-05 | 35.16 | Ribonuclease H-like superfamily protein | [more] |
AT4G29090.1 | 6.2e-04 | 25.71 | Ribonuclease H-like superfamily protein | [more] |