Moc05g25780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g25780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr5: 18297835 .. 18298377 (-)
RNA-Seq Expression	Moc05g25780
Synteny	Moc05g25780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACCCCTACACGGGAGTATGCTCAAGTTGATCGAAACTTGGGAGATATCAAATTGAAGCTCAAAATTCTATGGTAAGACTGATCTGGAGGCGTACATTCAGTGGGAAAAACAAGTGGAATACGTATTTGATTGCCACAATTTCAGTGAAGAAAAGAAGGTAAGACTATGTATTGCTCAATTTAAAGATTATGCAAAAACATGGTGGGACAAATTAATGTCAAGTAGAAACGAAACCTTGAAGCGTCAATCAATTCATGATATGAATTCAAGGAGTTGTTGAGGAGGCGAGTTCTTCCTAGATATTTCCAAAAGGACACAGCGCAAAAGCTACAAGTTTTGAGACAAGGTAGCAAGTCTGTGGAGGACTATTACAAGGAGATGGATTTGTTGATGGATCGATTTGATCTTGAAGAGGACCTGGAGAATCTCATGAATGACGTAAACAAGGAGATTGCTGATAAGGTTGATCTACAACCTTACTTTAACATTAAAGAGATGTTGCATATTGCCATAAAGATCGAAAAGCAACTCCAATGA

mRNA sequence

ATGCTCACCCCTACACGGGAGTATGCTCAAGTTGATCGAAACTTGGGAGATATCAAATTGAAGCTCAAAATTCTATGTGAAGAAAAGAAGGAGTTGTTGAGGAGGCGAGTTCTTCCTAGATATTTCCAAAAGGACACAGCGCAAAAGCTACAAGTTTTGAGACAAGGTAGCAAGTCTGTGGAGGACTATTACAAGGAGATGGATTTGTTGATGGATCGATTTGATCTTGAAGAGGACCTGGAGAATCTCATGAATGACGTAAACAAGGAGATTGCTGATAAGGTTGATCTACAACCTTACTTTAACATTAAAGAGATGTTGCATATTGCCATAAAGATCGAAAAGCAACTCCAATGA

Coding sequence (CDS)

ATGCTCACCCCTACACGGGAGTATGCTCAAGTTGATCGAAACTTGGGAGATATCAAATTGAAGCTCAAAATTCTATGTGAAGAAAAGAAGGAGTTGTTGAGGAGGCGAGTTCTTCCTAGATATTTCCAAAAGGACACAGCGCAAAAGCTACAAGTTTTGAGACAAGGTAGCAAGTCTGTGGAGGACTATTACAAGGAGATGGATTTGTTGATGGATCGATTTGATCTTGAAGAGGACCTGGAGAATCTCATGAATGACGTAAACAAGGAGATTGCTGATAAGGTTGATCTACAACCTTACTTTAACATTAAAGAGATGTTGCATATTGCCATAAAGATCGAAAAGCAACTCCAATGA

Protein sequence

MLTPTREYAQVDRNLGDIKLKLKILCEEKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLMNDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ

Homology

[Close]

BLAST of Moc05g25780 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-31
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 28  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM--- 87
           E KELLRRR +PR+F +DTAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM   
Sbjct: 197 EFKELLRRRFVPRHFHRDTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARF 256

Query: 88  -NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ 119
            N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Sbjct: 257 LNGLNKEIADKVDLQPYFNIEEMLHLAIKIEKQLQ 291

[Close]

BLAST of Moc05g25780 vs. NCBI nr
Match: XP_022158803.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 5.1e-30
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 28  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM--- 87
           E KELLRRR +PR+F + TAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM   
Sbjct: 77  EFKELLRRRFVPRHFHRKTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARF 136

Query: 88  -NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ 119
            N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Sbjct: 137 LNGLNKEIADKVDLQPYFNIEEMLHLAIKIEKQLQ 171

[Close]

BLAST of Moc05g25780 vs. NCBI nr
Match: XP_022152309.1 (uncharacterized protein LOC111020057 [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-25
Identity = 82/180 (45.56%), Postives = 102/180 (56.67%), Query Frame = 0


Query: 6   REYAQVDRNLGDIKLKLK---------------------ILC----EEKK---------- 65
           RE AQVDRNLG IKLK++                      +C    EEKK          
Sbjct: 60  REEAQVDRNLGSIKLKIQKFFGKTDPEEYLQWENEVESVFVCHNFSEEKKIQLFVARFKQ 119

Query: 66  ----------------------------ELLRRRVLPRYFQKDTAQKLQVLRQGSKSVED 119
                                       E L+ R +P++F++D AQKLQ LRQG+KSVED
Sbjct: 120 YAQTWWDKLMSRRRRNLEAPIVSWYEFNESLKERFVPKHFERDMAQKLQALRQGNKSVED 179

[Close]

BLAST of Moc05g25780 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-25
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 6   REYAQV--DRNLGDIKLKLKILCE---EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSV 65
           ++YAQ+  D+ +   +  L+   +   E KE +R+R +P+YFQ+D AQKLQ L+QG KSV
Sbjct: 155 KQYAQIWWDKLMSSRRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSV 214

Query: 66  EDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQ 119
           EDYYKEMD LMDR DL+ED+E LM    N +N EIADK DLQPY NI+E+LHIAIKIE+Q
Sbjct: 215 EDYYKEMDTLMDRLDLDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQ 274

[Close]

BLAST of Moc05g25780 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 6.5e-25
Identity = 70/122 (57.38%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 6   REYAQV--DRNLGDIKLKLKILCE---EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSV 65
           ++YAQ+  D+ +   +  L+   +   E KE +R+R +P+YFQ+D AQKLQ L+QG KSV
Sbjct: 155 KQYAQIWWDKLMSSRRRNLEAPIDSWYEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSV 214

Query: 66  EDYYKEMDLLMDRFDLEEDLENLM----NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQ 119
           EDYYKEMD LMDR DL+ED+E LM    N +N EIADK DLQPY NI+E+LHIAIKIE+Q
Sbjct: 215 EDYYKEMDTLMDRLDLDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQ 274

[Close]

BLAST of Moc05g25780 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 28  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM--- 87
           E KELLRRR +PR+F +DTAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM   
Sbjct: 197 EFKELLRRRFVPRHFHRDTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARF 256

Query: 88  -NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ 119
            N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Sbjct: 257 LNGLNKEIADKVDLQPYFNIEEMLHLAIKIEKQLQ 291

[Close]

BLAST of Moc05g25780 vs. ExPASy TrEMBL
Match: A0A6J1DX46 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 OS=Momordica charantia OX=3673 GN=LOC111025268 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-30
Identity = 76/95 (80.00%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 28  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM--- 87
           E KELLRRR +PR+F + TAQKLQVLRQGSKSVEDYYKEMD LM+R DLEED+ENLM   
Sbjct: 77  EFKELLRRRFVPRHFHRKTAQKLQVLRQGSKSVEDYYKEMDTLMNRLDLEEDMENLMARF 136

Query: 88  -NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ 119
            N +NKEIADKVDLQPYFNI+EMLH+AIKIEKQLQ
Sbjct: 137 LNGLNKEIADKVDLQPYFNIEEMLHLAIKIEKQLQ 171

[Close]

BLAST of Moc05g25780 vs. ExPASy TrEMBL
Match: A0A6J1DFN2 (uncharacterized protein LOC111020057 OS=Momordica charantia OX=3673 GN=LOC111020057 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 82/180 (45.56%), Postives = 102/180 (56.67%), Query Frame = 0


Query: 6   REYAQVDRNLGDIKLKLK---------------------ILC----EEKK---------- 65
           RE AQVDRNLG IKLK++                      +C    EEKK          
Sbjct: 60  REEAQVDRNLGSIKLKIQKFFGKTDPEEYLQWENEVESVFVCHNFSEEKKIQLFVARFKQ 119

Query: 66  ----------------------------ELLRRRVLPRYFQKDTAQKLQVLRQGSKSVED 119
                                       E L+ R +P++F++D AQKLQ LRQG+KSVED
Sbjct: 120 YAQTWWDKLMSRRRRNLEAPIVSWYEFNESLKERFVPKHFERDMAQKLQALRQGNKSVED 179

[Close]

BLAST of Moc05g25780 vs. ExPASy TrEMBL
Match: A0A6J1EVV9 (uncharacterized protein LOC111436463 OS=Cucurbita moschata OX=3662 GN=LOC111436463 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.7e-24
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 28  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM--- 87
           E KE +R+R +P+YFQ+D AQKLQ L+QG KSVEDYYKEMD LMDR +L+ED+E LM   
Sbjct: 20  EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 79

Query: 88  -NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ 119
            N +N EIADK DLQPY NI+E+LHIAIKIE+Q+Q
Sbjct: 80  LNGLNIEIADKTDLQPYSNIEELLHIAIKIERQIQ 114

[Close]

BLAST of Moc05g25780 vs. ExPASy TrEMBL
Match: A0A6J1EQJ1 (uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC111436530 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.7e-24
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 28  EKKELLRRRVLPRYFQKDTAQKLQVLRQGSKSVEDYYKEMDLLMDRFDLEEDLENLM--- 87
           E KE +R+R +P+YFQ+D AQKLQ L+QG KSVEDYYKEMD LMDR +L+ED+E LM   
Sbjct: 20  EFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLELDEDMEALMARF 79

Query: 88  -NDVNKEIADKVDLQPYFNIKEMLHIAIKIEKQLQ 119
            N +N EIADK DLQPY NI+E+LHIAIKIE+Q+Q
Sbjct: 80  LNGLNIEIADKTDLQPYSNIEELLHIAIKIERQIQ 114

The following BLAST results are available for this feature:

BLAST of Moc05g25780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157414.1	7.9e-31	81.05	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]	[more]
XP_022158803.1	5.1e-30	80.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]	[more]
XP_022152309.1	2.2e-25	45.56	uncharacterized protein LOC111020057 [Momordica charantia]	[more]
XP_023520835.1	6.5e-25	57.38	LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp....	[more]
XP_023553652.1	6.5e-25	57.38	uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Moc05g25780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g25780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWE9	3.8e-31	81.05	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia...	[more]
A0A6J1DX46	2.5e-30	80.00	LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 OS=Momordica charantia...	[more]
A0A6J1DFN2	1.1e-25	45.56	uncharacterized protein LOC111020057 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1EVV9	2.7e-24	67.37	uncharacterized protein LOC111436463 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1EQJ1	2.7e-24	67.37	uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC1114365...	[more]

BLAST of Moc05g25780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..93
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 27..118
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 30..78 e-value: 4.5E-7 score: 30.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g25780.1	Moc05g25780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding