Moc05g25680 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g25680
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Location	chr5: 18200613 .. 18212117 (-)
RNA-Seq Expression	Moc05g25680
Synteny	Moc05g25680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTATCGGATCCGGGAAGGCTCTAGCAGACTTGTCAAAATTGGAACCTCTCGATGGATCCAATTATCGCCGCTGGTACCAGAAGCTACTTATTTTCTTTGAGCAGTTGGAGATCGATTATATCCTTACTACTGCTCAGCCCCCCGTCGTCGCCACAACCACCACTGCTGACCAGTCTACCGCCATGGCTTCAGCTACGACTGCTGATCCCGGAACGTCCACTGTTGCTGTCGGTGGTACTGACAAATTTGAGAAAGACAACAAGACTGTTCGTGGGCATCTACTCAACCATATGAAGGATTCTCTCTTCGATCTATTCATAGTCCAAAAATCTGCAAAGATTATTTGGGACAGTTTAGAATCTAGATATGGTGGGGATGATGCAAGCAGGAAAAAGTACGTTGTCGGTAAATTATTTCAATTCCAGATGACGGATGAAAAACCAATAATGGATCAAGTTCATGAGTACGAAAACCTGGTGGCAAATGTGCTCTTAGAAGGCATGAAGATTTGTGAGGTTTTTCAGGCGAATGCGCTGCTTGAGAAATTCCCTCCCTCATGGAGTGATTATCGAAACTACCTGAAACACAAGAAAAAAGAGTTGACCCTGCAGGAATTGATCAGTCACATGCGTACAGAGGAAGCCAACAGACAAAAGGATAAGCTCTCTTCTCAATCTTTAAATTAAGTTAAAGCTAACTTAGTTGAATCTTCTAGTGCTTTCAAAGACAGGTTCAAAAATAAAGGGGAAACAGGGTTTTAATGATAGAGTACAAAATAAGAAGGGATTTCAAATAAAAAATGCTGGAGGAAAAATTGAGAAAGCCAAACTGGTTTGTTATTTCTGTGGAAAACTAGGACACAAATCCTATCAATGCATCCAGAGAAAATACAAACGACCTACTCCACAAGCGAATCTCGCAGAGACAGATGATATCATTGCCGCCGTGGTCGTGAAGGCAAATCTAGTAGAGAACAAGTCTGACTGGATCCTAGACACCGGAGCTTCCAGACACTTCTGCTCGAACCTTGAGCTCTTCCAAGACTTCCAGGACTCCACCGATGGCGAATATGTCTTTATGGGGAACTCTACCACAGCTGGAGTACTTGGGAAATGGAAGATACTCTTAAAACTCACTTCTGGCAAAACTTTATCTTTAAGTAATGTACTGTATGTTCCTTCCCTACGTAGGAATTTGGTGTCTGGAGGTTTGCTGAATCGAGCTGGACTTAGGATTGTGTTTGAGGCCGACAAGGTTATCATCACCAAAAATGGTGATTTTGTTGGTAAGGGATATTTAGTAGATGCTTTATTTGTCCTTAACATTGCTTCTATTAATGAAATTGATTCACATTGTGCTTATATGGTTGAGTCTATTGATGTGTGGCATGGTAGACTAGGACACGTGAATATTGCATCAATTAAAAGGCTTAAAGCTCTAAATCTAATTGATACTTATGAGTTGCATGAAACCCAGAAATGTCATGTATGCGTAGAGGCAAAGTTTCACAAAAAGCCTTTTAGATTTGTCACAACTAGAAGTACTGAGCTACTTGAGTTAATTCATTCTGATTTAGCTGATTTCAAGAACACTACTAGTAGAGGTGGAAAACATTACTATATTTCATTTGTTGACGATTTTTCTAGATATACGAAAATTTATATACTAAAATCTAAAGATGAAGCTAGTAGTATGTTTTTGAAATTCAAAACTGAAGTAGAAAACCAATTGAATAGAAAGATAAAAAGACTAAGATCTGATAGGGGAGGCGAATATAGTGATAATTTCCTTAAAGAATTTTGTGAAATGAATGGTGTCATACATGAATTCACTGCTCCTTATTCATCACAACAAAATGGAATAGTTGAACGTAAAAATTTAAAGGAAATGATGAATGCTATGTGGGGGGGGGGGGGGGGAGCTGCGCTTTCTGCATGTTTTGTTCTTAACAGGGTCCCTCACAAAAAGCTGAATAAGACGCCGTATGAACTTTGGAAAGGATATTCACCTAACCTAAGCTACTTGAGAGTGTGGGGGTGCTTAGCAAAAGTGGCATATCCAGAATTCAAAAAACCTACGGTAGGCTCTAAAACCTTTGATTGTGTCTTTATTGGTTATGCTCAAAATAGTTCAGCGTATAGATTCATGTGCTTAAGGAATGATACAATTTGTGAATATAGAGATGCTGTATTCTTTGAAAATATTTTCTCGTTCGTCAAGAATTTGAGTGAATCATGTGTAACTCCAAAACAAACTTTACCCTCAATTTCTAGTGATGAGTTGGATTTTAAACGTAGTAGTGAGGTTACAAAAGATCTAGAACTTAGGAGAAGTAAAAGGCAAAAGATTAGCAAAAGTTTTGGACTTGACTTTTTAACTACCTTTTTAGTTGAAAAATCGGATAAAATAGATAATCAATTTGCTTGCATGTATCTAATAGATGAAGATCCTAAAACCTACTAAGAAGCTATTAGTTCTATAGATTCTAGCTTATGGAAAGAAGCAATTAAAAGTGAACTAGACTCCATAGTTATAAATCAAACTTGGGACTTGGTAGATCTTCATATAGGAAATAAACTTATTAAAAGCAAATGGATCTTTAAGAAGAAAATTAGACCAGATGGATCAATTGAAAAATACAAGGCTAGATTAGTGGTTGTAGGTTAGACACAGAAATATGAAATTGACTATTTTGATACATATTCTCCTGTAACTAAAATAGCCACTATTAGATCTCTAATTGCTCTTGTTGCCATTCATGACCCATTAATACATCAAATGGATGTAAAAACATTTCTTAATGGAGATTCAGAGGAAGAGATCTATATGACACAACCTGAAGGTTTTCTAATTGCTGGTCAAGAAAATAAAGTGATATGAACCAAGGAGCTACCGTTGTTATGCCTCATGGACCGATTACAAGATCGAGAGCTAGGAAACTTCAACAAGCTTTGCTACTTCGTGTCCAAGCGTTCTTGAACTCGACAAGAGAAATAAAGGAAGATGTGCAAGAAGTTAGAACTATGCACTTCAATTTGGTGCAAGTTATGCATTTTTAAGTGTTTTTATGGCAAGTTAAAGTCCACTTGGTCAAGGTCAAAGTCAACTCCATCAAGACAAGTCAAAGTCAACTCATTCAATTCAAAAACCAAGTCAAACACTCACATCCCTCATTATGGACGGGATTGCAATTATTTTGGTTGGCTTTCCATGTTCTTAACCTTTTCATTTGCTTGTCTTTTCATTTCTCGTAAGTTATGTCTTTTCATTTACAAGTCTTTTCATTTCTTGTAAGTTACAAGTCTTTTCATTTGCTTAAGACTTTTCATATGGCTTGTTAGGATGGCTATATATAGCCTTGAGATGTCTTGTTGTAACACAATTTGAAGTTGAATGAAAAGTGAGTTTTCTCATTAGCTTGGTTGAGAGATTTATCTCCCATTTCTTGTGCAATTTCTTGTGTCTTTAGAATTTGCATCTTAGGATCATTCAAGCGGTGTTGATCATACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACAAGTTTTCTCTACTCTTGATATTGATCATCAAGGTAATCCGTTCTAAAACTTTTCCTTGGGTTGATTCCATACTTGTTTTCGGGGTTTTTGGGATTGAGTTCTATGGGTCTTGTTCGTTAGCAAGGTTCTTAGATCCAACTCTCAAGGGTTTCTTAACATTTTGGTATCAGAGCTCTGATATATGTCGAGTTCAAGAGCAAGGTTCTTAGGCTCTTTGATCGGATATATGTTTCCTTGCATTTATCTCTTTGAATTCTGTGTTCCTTGCTTATGTTTTATTATATCTAAGCATATGCATTCTGTCAAAAAAATTACAAAAAAAAAAAGTATCAATTCCATTCATCTTTCCCAATTTTCGTCTTCTGCATTATTATAGATCTGGATCTTATCTACAAATCTGTCTTCTTTGAAGTCTTATGATTCGACTTTCTTAGTGGTGAAATTCGTGCACTTTGCTGATTGATTTATAAAAAAAAAAAAAAAAAAAAAAACTGAACGTGAAAGCATTTATTGTTAGCATTATTGTGCTTTTGCTGATCCATAACTGAAAAAAAAAAAAACGAAAGAAAGAAGAAAAAAAAAACATAGAAGACCCCATTTGTCATTACTTCTTTGTGTAGCCTTGCATTGAAATCTCATGCTACTTCCTTGTTGCTTAATTCCCAACCATCTTTATCTTTAACTCTACTTTCGTTTCTTTCTAGCTTCCATTATAACTCTGTCCATTATTTTTTTTCTTAACTTGTTTCTTTGTTGTTATTCGGGTTACTCCCAAAATCACACTCTTGTTTGAGTTCTTATGTGCTGTCTAAACCACTTGAAATGCACATAGCTTTTAACTTTGCTAGACTCACTTACCGATTTGTTTGAAGTGCATAAGAGTGTACTAAGTTGTGAGGGAGAGATTGTAAGGGAGCGATACATTATTTTGAGTGTTGAGGGTTAAACACGAGTGAACTTCACTAACGAGTGAATTAGTGAGGGAGTGCTTGTGAGGTCCATTTCTTGTCACTCTATTTTGTTTTTACAGCATGGCTAATCTTGGAGATGAAGGCAATATTTCTGATGCCCGGAGGAGAGAGGCGCTAGAAGGAACTGTTGAACGAATGATTCGTAGCATGGAGGCATTGACAGAACGGATAGGAAGGTTGGAGACTCAAAACCAAGCTCAGGAGAGAGTTCCACCACCTCCACCACCACGTGTTATGGATGAGGATGAGTATGAAGGTGATGGATCCGATCATTGGGAGGACGATCAGGCTACAGTTTTAGCGGGTCCAAGAGGGGGTGATAGACACGTTGGTCGTGGCTTAGATCGAGGGAGAGGCCGGGGAAGAGGCTATCATAATTTCCAAAGAGCCCCACGAGCGAATGCTCAAGTTGATCGAAACTTGGGAAACATCAAATTAAAACTTCCGAAGTTCTATGGTAAGACTGATCCGGAAGCGTACATTCAATGGGAGAAAGAAGTGGAGTTCGTGTTTGATTGCCATAATTTCAGTGAAGAAAAGAAGGTACGACTATGTCTTGCTCAATTCAAAGATTATGCAGTAACATGGTGGGACAAATTAATGTCAATTAGGAGACGAAACCTTGAGGCGCCAATCGATTCATGGTATGAGTTCAAGGAGTTGTTGAGGAGGCGATTTGTTCCTAGACATTTCCACAGGGACACAGCGCAAAAGCTCCAAGTGTTGAGACAAGGTAGTAAGTCTGTGGAGGACTATTACAAGGAGATGGATACGTTGATGAATCGGCTGGATCTTGAAGAGGACATGGAGAATCTCATGGCACGGTTTCTTAATGGCTTAAACAAGGAGATTGCGGATAAGGTTGATCTACAACCTTACTTTAACATCGAAGAGATGTTGCACCTTGCCATCAAAATTGAGAAGCAGCTCCAAAGGCGATCTCAAAGGTATTCTACTAAGCCCTTTTCCCATTCATCTTCTACATGGAAAACGGATAGTAAGAGTGCTGATTCTAAACTTAGAAATCGAGAGGCATATGAGAAACCAAAAGAAAAGTTTGAGAAAGGAGAGAGTTCCAAGAAGGGGAAAGAGAAAGTTGATGAACCTAATGTGAGGAATCGGGATATTAAATGCTGGAAATGTCAAGGAGTAGGACATTACAGTCGAGACTGCCCTAATAGAAGAACTATGATAATTAGAGAAGGAGAGTTTGTAACAGAAGATGAGAAGGAAGATGAGGTAGAAGAGGACGACAATGGTGAATGTGAGAGTGAGGAGTATAGTGAAGAGGACCCTACACATATGTCATTAGTCACTAGGAGAGCTCTCAGTACTCAAATTAAGGAGGATGGCCTAGACCAACGAGAGAACTTATTTCACACTAGGTGTCTTGTCCAAACTGTGCCTTGTAGTGTGATTATTGATAGTGGTAGTTGTACCAACGTTGTAAGTTCTATTCTGGTCAAGAGGCTTAACTTAGAGACAAAACCACATCCTAGACCATATAAACTTCAATGGTTGAGTGATTGTGGGGAGGTAAAGGTGAGTAGACAAGCTCTTGTTTCTTTTGCTATTGGAAAATATGTTGATGATGTTTTGTGTGATGTTGTACCTATGCATGCCGGGGATATATTGTTGGGTAGACCTTGGCAATTTGACCGTCGGGTAATGTATGATGGGTATGCCAATCGCTATTCTTTTACTCATCATGGAAGAAAAACTACTCTTGTACCTTTGTCACCAAAAGATGTGCATGTTGATCAATGCAAACTTGAAAAGAAGAGGCAAGAGGCTGATGCAAAAGCAAAAAGTGAAAAAGAAACAAAAGAAAATGAGTTGAGAGAAAAAAAAAGTTTGAGTGAAAAGCAAGGGAGTAGCAATCAGCCTAGTGGGAAAAATGAGAGAAAAGCCAAAACGGTGAGCTTGTATGCTAGTTCAAGTGAGGTTAGGAATGTTTTAATGGCGAAACGGACTGTTCTTGTACTTTTGTACAAAGGGTCTTGTTTTCTTACTAACGAGCTTAACACCTCCTTGCCTAGTATTTTTGTTTCTCTTTTACAGGAATTTGAGGACTTGTTTCCCGAGGAGATGCCCAAGGAATTGCCACCACTTCGTGGCATCGAGCATAAGATTGACTTCATTCCAGGTGCTACCATACCTAACCGACCAGCTTATAGGACTAATCCTACTGAAGCCAAAGAAATTCAAAGGCAAGTGGATGAATTGTTAGCTCATGGGTATGTACGCGAAAGCCTTAGTCCTTGTAGTGTGCCTGTTATTTTAGTGCCTAAAAAAGATGGAACTTGGAGAATGTGTGTAGACTGTAGGGCTATTAATAAGATCACTGTTAAATATCGTCATCCTATTCCTAGGTTAGATGATATGTTAGATGAATTGCATGGCTGTAGTCTCTTTACTAAGATTGATTTGAAATCTGGGTATCATCAAATTCGTATGAATGTTGGAGATGAATGGAAAACTGCATTTAAGACCAAATATGGATTGTATGAGTGGCTTGTTATGCCTTTTGGTTTAACTAATGCTCCTAGTACTTTCATGAGGTTGATGAACCATGTATTGCGTGAATATTTGGGAAAATTTGTGGTTGTTTATTTTGATGATATACTTGTGTATTCGAAGTCTTTGGAAGATCATGTAATGCATGTGCGTGCTGTTCTGACTACACTTAGAAACGAGAAATTGTATGCTAACCTAAAGAAATGTAATTTTTGCATGGAAAGGGTTAATTTTCTTGGTTTCATTGTGTCTAGTCGAGGAGTTGAGGTGGATAGTGAGAAAGTTAAGGCTATTAGCGAATGGCCAACTCCCACGAATGTTGGGGAGGTTCGAAGTTTTCATGGGCTAGCTAGCTTTTATCGGCGTTTTATTAAGGACTTTAGCACCCTAGCTTCACCTCTAAATGAATTGGTAAAGAAAAATGTTCCTTTTGTTTGGGGTACATCCCAAGAGCATGCTTTTAATGTTTTAAAGGATAAGTTGTGCAATGCTCCTCTACTTGCTTTACCGAACTTTGATTTGACTTTTGAAATTGAATGTGATGCAAGTGGGATTGGAATTGGGGCTGTACTAATGCAAAACCATAAGCCACTAATGTTCTTCAGTGAAAAGTTGAGTGGTGCTTCTTTGCGGTACCCAACTTATGACAAAGAACTTTATGCTTTGGTACGAGCTTTGCACACTTGGCAGCATTATCTTTGGCCAAAGGAGTTCGTCATTCATACGGATCATGAGAGCCTAAAGCACTTGAGAGGGCAAAGCAAACTGAATCGCAGACATGCCAAGTGGTTGGAGTTTATAGAGACATTTCCATATGTGATTAAGTATAAACAAGGTAAGGAGAACATTGTTGCAGATGCTTTATCACGAAGGTATGCTCTCTTTAATACTTTGAATGCTAAGATTTTAGGATTTGAACATCTCAAGTCCTTGTATCTAGATGATGTGTTCTTTGCTCCTTTTGTTGAATCGTGTGAAAAAGGACTTGTTGTTGATGATTACATGTTGTTTGAAGGATTTTTGTTTCGAAAAGGAAAACTTTGCATTCCATCTTGTTCAATTCGTGAATTGCTTGTAAAGGAAGCTCATGGGGGTGGTTTAATGGCTCATTTTGGTGTTTCTAAAACTTATGATATGCTTGCTGAACATTTTTATTGGCCTAAGATGAAGCATGATGTGCATAAAGTGTGTAAGCATTGTATTGCATGCAAACAAGCTAAGTCTAGGTTACAACCACATGGTTTATATTCACCTTTGCCTGTTCCTACTACTCCTTGGGTTGATATTTCTATGGATTTTGTCCTTGGTTTACCAAGAACTCGGAAGGGTAGGGATAGTATATTTGTAGTGGTTGATAGGTTTAGCAAGATGGCGCATTTCATACCATGCCATAAAACCGATGATGCTAAATTGATTGCTGATTTGTTTTTTAGGGAAGTTGTTCGTTTGCATGGCATTCCTAGAACTATTGTTAGTGATCGCGATGTAAAATTTTTAAGTCATTTTTGGCGTGTGTTATGGGGAAAGTTGGGAACCAAACTTGTTTATTCTACTACTTGTCATCCCCAAACTGATGGACAAACTGAGGTAGTAAATAGGACAATGGTTACCATGCTTCGAGCAATCATAGATAAAAATCTTAAAACTTGGGAGGATTGTTTGCCATTAATTGAATTTGCATATAATAGGGCTGTCCATTGTACTACTAAATGCACACCGTTTGAAATTGTATATGGTTTCAATCCTATCTCCCCACTTGATTTGTTGCCTATGCCTCCTAATGAATTTGTGAGTTATGATGCTAGCACAAAGGTTGATCTTGTCCATAGGCTACATAAAGAAGTTAAGGAAAGGATTGAGAAGCAAAACACTAAGGTTGCTTCCCGCATCAATAAAGGACGCAAGCTCCTTGTTTTCCAGCCAGGGGATTGGGTTTGGGTACATTTTCGAAAGGAACGGTTTCCAACTCAACGAAGGTCTAAGTTGCTACCACGAGGCGATGGTCCTTTTCAAGTCCTTGAACGGATCAATGATAATGCTTATAAGATTGATTTGCCAGGTAAGTATGGAGTGAGTGCTACCTTTAATGTTTCTGATTTGTCTCCTTTTGATGTAGTTGATGACTTCGATTCGAGGACGAATCCTTCTGAAGATGGGGAGGATGATATGAACCAAGGAGCTACCGTTGTTATGCCTCATGGACCGATTACAAGATCGAGAGCTAGGAAACTTCAACAAGCTTTGCTACTTCGTGTCCAAGCGTTCTTGAACTCGACAAGAGAAATAAAGGAAGATGTGCAAGAAGTTAGAACTATGCACTTCAATTTGGTGCAAGTTATGCATTTTTAAGTGTTTTTATGGCAAGTTAAAGTCCACTTGGTCAAGGTCAAAGTCAACTCCATCAAGACAAGTCAAAGTCAACTCATTCAATTCAAAAACCAAGTCAAACACTCACATCCCTCATTATGGACGGGATTGCAATTATTTTGGTTGGCTTTCCATGTTCTTAACCTTTTCATTTGCTTGTCTTTTCATTTCTCGTAAGTTATGTCTTTTCATTTACAAGTCTTTTCATTTCTTGTAAGTTACAAGTCTTTTCATTTGCTTAAGACTTTTCATATGGCTTGTTAGGATGGCTATATATAGCCTTGAGATGTCTTGTTGTAACACAATTTGAAGTTGAATGAAAAGTGAGTTTTCTCATTAGCTTGGTTGAGAGATTTATCTCCCATTTCTTGTGCAATTTCTTGTGTCTTTAGAATTTGCATCTTAGGATCATTCAAGCGGTGTTGATCATACCTCTTGTGGAGTGATTCGAATCACGAGTTTAGAAACAAGTTTTCTCTACTCTTGATATTGATCATCAAGGTAATCCGTTCTAAAACTTTTCCTTGGGTTGATTCCATACTTGTTTTCGGGGTTTTTGGGATTGAGTTCTATGGGTCTTGTTCGTTAGCAAGGTTCTTAGATCCAACTCTCAAGGGTTTCTTAACATAAAGTATGCAAGCTTAGAAAATCTCTCTATGGTCTTAAATAATCTCCTAAACAATGGTATGAGAAATTCAATAGCACTTTAGTAAACAATGGTTATAAAGTAAATTGTTCTGATACGTGTGTTTACTCAAAGTTGTTTGGAGTTGAATGTGTGATAATATGTTTATATGTTGATGACATGCTTATTTTTGGTACAAACTTACATGTCATTAATGATACCAAGTTATTGTTATCCTCACATTTTGAGATGAAAGATCTAGGAGAATCTGATGTAATACTTGGTATTAAAATAAGGAAAAATGATAATGGATTCTCCTTATGCCAGTCACACTATATAGAAAAAATGTTAAAGAAATTCAACTGTTTTGATAATCCACCTGTAAGAACACCTTATGATGCTAGCATTAGTCTAAAGAAAAATAAAGATGATACGATTTTTCAATCTGAATATGCAAAAATCATAGGTAGTGTTATGTTTTTAATGAACTATACTAGACCTAACATTGCATATGCTGTAAGTAGATTGAGTAGATATACACATAATCCTAGTAATGAACATTGGACCGCTCTTCATCGTTTATTGAGATATCTAAAAGGCACCATGGATTACTGTTTGCATTATAACAAGTTTCCTGCTGTGTTAGAAAGGTATTGTGATGCAAACTGGGTTACAGATAACGATGAGGTGAGCTCTACTAGCGGATATGTGTTTCTTTTAGGTGGAGGAGCTATCTCTTAGAAGTCAGCAAAGCAGACTTGCATCGCACGTTCCACTATGGAATCCGAGTTCATAGCATTTGAATTAGCATGACAAGAGGTTGAATGGCTGAGAAGTCTTGTTGTAGATGTGTCGTTGTGGGGGAAATCTGTACCTGTATCCCTTTATTGTGACTCGCAGGCTGCCATAGGGATTGCCAAAAACAGTGTGTACAATGGTAAGAGACGCCACATACGTCTAAGACATAGAGCTATGAAACAATTGCTGAAAAATGGCATTATCTCCTTGAATTATGTTAGGTTCGAGAGGAACTTAGCAGATTCTCTCACCAAAGGCCAACAATGAGGGTAATTGTAGAGTCATCAAGTTGTATGGGACTCAGCATTTAATGTTTCTCATTTGTGAATCCATAGCCCTAATTTTGGGTGGTCCAGGTATGCACCTGATGGATGTAATAAAACACAATGTGAATCCATAGCCCTTCTTTTGGGTGGTCGAGGTATGGACTTGATGGATGTAATAAATCACATAGTGAATCCATAGCCCTATTTTGGGTGGTTCTTATAACGACTTGATGGATAATGTTCAAAGTCTTCATAGCCCAGTTTTGAGTGGTTTATCGATGATAGACTTGATGAAACAACAGCGTGACCGTGAAGGTTAGGCCGCCTTCTATGAAAGAGTCAGAGTCTCTTTCTAGAGTTGTCACGATGGCCAAGGGTTCTATGTACATGGCAATGAATAGCACTTGA

mRNA sequence

ATGGCTACTATCGGATCCGGGAAGGCTCTAGCAGACTTGTCAAAATTGGAACCTCTCGATGGATCCAATTATCGCCGCTGGTACCAGAAGCTACTTATTTTCTTTGAGCAGTTGGAGATCGATTATATCCTTACTACTGCTCAGCCCCCCGTCGTCGCCACAACCACCACTGCTGACCAGTCTACCGCCATGGCTTCAGCTACGACTGCTGATCCCGGAACGTCCACTGTTGCTGTCGGTGGACACAAATCCTATCAATGCATCCAGAGAAAATACAAACGACCTACTCCACAAGCGAATCTCGCAGAGACAGATGATATCATTGCCGCCGTGGTCGTGAAGGCAAATCTAGTAGAGAACAAGTCTGACTGGATCCTAGACACCGGAGCTTCCAGACACTTCTGCTCGAACCTTGAGCTCTTCCAAGACTTCCAGGACTCCACCGATGGCGAATATGTCTTTATGGGGAACTCTACCACAGCTGGAGTAATCCGTTCTAAAACTTTTCCTTGGGTTGATTCCATACTTGTTTTCGGGGTTTTTGGGATTGAGTTCTATGGGTCTTGTTCGTTAGCAAGCATGGCTAATCTTGGAGATGAAGGCAATATTTCTGATGCCCGGAGGAGAGAGGCGCTAGAAGGAACTGTTGAACGAATGATTCGTAGCATGGAGGCATTGACAGAACGGATAGGAAGGTTGGAGACTCAAAACCAAGCTCAGGAGAGAGTTCCACCACCTCCACCACCACGTGTTATGGATGAGGATGAGTATGAAGGTGATGGATCCGATCATTGGGAGGACGATCAGGCTACAGTTTTAGCGGGTCCAAGAGGGGGTGATAGACACGTTGGTCGTGGCTTAGATCGAGGGAGAGGCCGGGGAAGAGGCTATCATAATTTCCAAAGAGCCCCACGAGCGAATGCTCAAGTAATCCGTTCTAAAACTTTTCCTTGGGTTGATTCCATACTTGTTTTCGGGGTTTTTGGGATTGAGTTCTATGGGTCTTGTTCGTTAGCAAGGTATGCACCTGATGGATGTAATAAAACACAATGTGAATCCATAGCCCTTCTTTTGGGTGGTCGAGGTATGGACTTGATGGATGTTAGGCCGCCTTCTATGAAAGAGTCAGAGTCTCTTTCTAGAGTTGTCACGATGGCCAAGGGTTCTATGTACATGGCAATGAATAGCACTTGA

Coding sequence (CDS)

ATGGCTACTATCGGATCCGGGAAGGCTCTAGCAGACTTGTCAAAATTGGAACCTCTCGATGGATCCAATTATCGCCGCTGGTACCAGAAGCTACTTATTTTCTTTGAGCAGTTGGAGATCGATTATATCCTTACTACTGCTCAGCCCCCCGTCGTCGCCACAACCACCACTGCTGACCAGTCTACCGCCATGGCTTCAGCTACGACTGCTGATCCCGGAACGTCCACTGTTGCTGTCGGTGGACACAAATCCTATCAATGCATCCAGAGAAAATACAAACGACCTACTCCACAAGCGAATCTCGCAGAGACAGATGATATCATTGCCGCCGTGGTCGTGAAGGCAAATCTAGTAGAGAACAAGTCTGACTGGATCCTAGACACCGGAGCTTCCAGACACTTCTGCTCGAACCTTGAGCTCTTCCAAGACTTCCAGGACTCCACCGATGGCGAATATGTCTTTATGGGGAACTCTACCACAGCTGGAGTAATCCGTTCTAAAACTTTTCCTTGGGTTGATTCCATACTTGTTTTCGGGGTTTTTGGGATTGAGTTCTATGGGTCTTGTTCGTTAGCAAGCATGGCTAATCTTGGAGATGAAGGCAATATTTCTGATGCCCGGAGGAGAGAGGCGCTAGAAGGAACTGTTGAACGAATGATTCGTAGCATGGAGGCATTGACAGAACGGATAGGAAGGTTGGAGACTCAAAACCAAGCTCAGGAGAGAGTTCCACCACCTCCACCACCACGTGTTATGGATGAGGATGAGTATGAAGGTGATGGATCCGATCATTGGGAGGACGATCAGGCTACAGTTTTAGCGGGTCCAAGAGGGGGTGATAGACACGTTGGTCGTGGCTTAGATCGAGGGAGAGGCCGGGGAAGAGGCTATCATAATTTCCAAAGAGCCCCACGAGCGAATGCTCAAGTAATCCGTTCTAAAACTTTTCCTTGGGTTGATTCCATACTTGTTTTCGGGGTTTTTGGGATTGAGTTCTATGGGTCTTGTTCGTTAGCAAGGTATGCACCTGATGGATGTAATAAAACACAATGTGAATCCATAGCCCTTCTTTTGGGTGGTCGAGGTATGGACTTGATGGATGTTAGGCCGCCTTCTATGAAAGAGTCAGAGTCTCTTTCTAGAGTTGTCACGATGGCCAAGGGTTCTATGTACATGGCAATGAATAGCACTTGA

Protein sequence

MATIGSGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQPPVVATTTTADQSTAMASATTADPGTSTVAVGGHKSYQCIQRKYKRPTPQANLAETDDIIAAVVVKANLVENKSDWILDTGASRHFCSNLELFQDFQDSTDGEYVFMGNSTTAGVIRSKTFPWVDSILVFGVFGIEFYGSCSLASMANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMDEDEYEGDGSDHWEDDQATVLAGPRGGDRHVGRGLDRGRGRGRGYHNFQRAPRANAQVIRSKTFPWVDSILVFGVFGIEFYGSCSLARYAPDGCNKTQCESIALLLGGRGMDLMDVRPPSMKESESLSRVVTMAKGSMYMAMNST

Homology

[Close]

BLAST of Moc05g25680 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 215.3 bits (547), Expect = 9.4e-52
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 194 MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 253
           MANLG EGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQA+ RVPPPP  RVMD
Sbjct: 1   MANLGXEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMD 60

Query: 254 EDEYEGDGSDHWEDDQATVLAGPRGGDRHVGRGLDRGRGRGRGYHNFQRAPRANAQVIRS 313
           EDEYEGDGSDHWEDDQATVLA PRGGD HVG GLDRGRGRGRGYHNFQRAPRANAQV R+
Sbjct: 61  EDEYEGDGSDHWEDDQATVLAXPRGGDXHVGXGLDRGRGRGRGYHNFQRAPRANAQVDRN 120

[Close]

BLAST of Moc05g25680 vs. NCBI nr
Match: KAA0038241.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-37
Identity = 91/159 (57.23%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQPPVVATTTTADQSTAMA 65
           S K L DLSKLEPLDG+NYRRW +KLLIFFEQLE+DY+LTT  P    + TT   ST+  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEVDYVLTTDLPSSDPSATT---STSSN 65

Query: 66  SATTADPGTSTVAVGGHKSYQCIQRKYKRPTPQANLAETDDIIAAVVVKANLVENKSDWI 125
             ++  P TS   +   K      R  ++PTPQANLAE D  I A +V+ NL+ENK+DWI
Sbjct: 66  PESSTGPSTSVAVIDQRKG-----RPSQKPTPQANLAEQDSEIIAAIVEVNLIENKTDWI 125

Query: 126 LDTGASRHFCSNLELFQDFQDSTDGEYVFMGNSTTAGVI 165
           LDTGASR+FC+N EL  D++D+TDGE V M N TTAGVI
Sbjct: 126 LDTGASRYFCTNRELLHDYEDTTDGECVSMKNLTTAGVI 156

[Close]

BLAST of Moc05g25680 vs. NCBI nr
Match: KAA0048277.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-32
Identity = 105/279 (37.63%), Postives = 123/279 (44.09%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQP---PVVATTTTADQST 65
           S K L DLSKLEPLDG+NYRRW QKLLIFFEQLE+DY+LTT  P   P   T+T++D  +
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTSSDPES 65

Query: 66  AMASATTA---------------------------------------------------- 125
           +    TT                                                     
Sbjct: 66  STGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEIWST 125

Query: 126 --------DPGTSTVAVG------------------------------------------ 165
                   D G     VG                                          
Sbjct: 126 LESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILEANI 185

[Close]

BLAST of Moc05g25680 vs. NCBI nr
Match: TYK06658.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 6.0e-30
Identity = 103/290 (35.52%), Postives = 122/290 (42.07%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILT----TAQPPVVATTTTADQS 65
           S K L DLSKLEPLDG+NYRRW QKLLIFFEQLE+DY+LT    T  PP   +T++  +S
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPATTSTSSDPES 65

Query: 66  TAMASATTAD-------------------------------------------------- 125
           +   S T AD                                                  
Sbjct: 66  STGPSTTVADQIKKDQVIDPENMQRITRPHEDVRNTSSKCPAGKVSPSWNDYRNHLKYKK 125

Query: 126 ------------------------------------------------------------ 165
                                                                       
Sbjct: 126 KDLKLQELISHMHTEEANRLKDKLASQNLNSVNAYLVESSIVNRDRTKQEKGHKGKNSEK 185

[Close]

BLAST of Moc05g25680 vs. NCBI nr
Match: KAA0041580.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-29
Identity = 90/219 (41.10%), Postives = 112/219 (51.14%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQP---PVVATTTTADQST 65
           S K L DLSKLEPLDG+NYR W QKLLIFFEQLE+DY+LTT  P   P   T+T ++  +
Sbjct: 6   SNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTYSNPES 65

Query: 66  AMASATTA------------DP-------------------------------------- 125
           +  S TT             DP                                      
Sbjct: 66  STGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSEPMFDLFVVQKSAKDIWST 125

Query: 126 ---GTSTVAVGGHKSYQCIQRKYKRPTPQAN----LAETDDIIAAVVVKANLVENKSDWI 165
                 T    GHK     +R++K    Q      ++E D  I A +++ANL+ENK+DWI
Sbjct: 126 LESRDRTKQEKGHKGKNSEKRQFKTTRGQIKKKKLVSEQDSEIIAAIIEANLIENKTDWI 185

[Close]

BLAST of Moc05g25680 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.6e-52
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 194 MANLGDEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAQERVPPPPPPRVMD 253
           MANLG EGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQA+ RVPPPP  RVMD
Sbjct: 1   MANLGXEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMD 60

Query: 254 EDEYEGDGSDHWEDDQATVLAGPRGGDRHVGRGLDRGRGRGRGYHNFQRAPRANAQVIRS 313
           EDEYEGDGSDHWEDDQATVLA PRGGD HVG GLDRGRGRGRGYHNFQRAPRANAQV R+
Sbjct: 61  EDEYEGDGSDHWEDDQATVLAXPRGGDXHVGXGLDRGRGRGRGYHNFQRAPRANAQVDRN 120

[Close]

BLAST of Moc05g25680 vs. ExPASy TrEMBL
Match: A0A5A7T9C8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00870 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.9e-38
Identity = 91/159 (57.23%), Postives = 111/159 (69.81%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQPPVVATTTTADQSTAMA 65
           S K L DLSKLEPLDG+NYRRW +KLLIFFEQLE+DY+LTT  P    + TT   ST+  
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSKKLLIFFEQLEVDYVLTTDLPSSDPSATT---STSSN 65

Query: 66  SATTADPGTSTVAVGGHKSYQCIQRKYKRPTPQANLAETDDIIAAVVVKANLVENKSDWI 125
             ++  P TS   +   K      R  ++PTPQANLAE D  I A +V+ NL+ENK+DWI
Sbjct: 66  PESSTGPSTSVAVIDQRKG-----RPSQKPTPQANLAEQDSEIIAAIVEVNLIENKTDWI 125

Query: 126 LDTGASRHFCSNLELFQDFQDSTDGEYVFMGNSTTAGVI 165
           LDTGASR+FC+N EL  D++D+TDGE V M N TTAGVI
Sbjct: 126 LDTGASRYFCTNRELLHDYEDTTDGECVSMKNLTTAGVI 156

[Close]

BLAST of Moc05g25680 vs. ExPASy TrEMBL
Match: A0A5A7U214 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002010 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-33
Identity = 105/279 (37.63%), Postives = 123/279 (44.09%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQP---PVVATTTTADQST 65
           S K L DLSKLEPLDG+NYRRW QKLLIFFEQLE+DY+LTT  P   P   T+T++D  +
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTSSDPES 65

Query: 66  AMASATTA---------------------------------------------------- 125
           +    TT                                                     
Sbjct: 66  STGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAKEIWST 125

Query: 126 --------DPGTSTVAVG------------------------------------------ 165
                   D G     VG                                          
Sbjct: 126 LESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCEILEANI 185

[Close]

BLAST of Moc05g25680 vs. ExPASy TrEMBL
Match: A0A5D3C674 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001400 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-30
Identity = 103/290 (35.52%), Postives = 122/290 (42.07%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILT----TAQPPVVATTTTADQS 65
           S K L DLSKLEPLDG+NYRRW QKLLIFFEQLE+DY+LT    T  PP   +T++  +S
Sbjct: 6   SNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPATTSTSSDPES 65

Query: 66  TAMASATTAD-------------------------------------------------- 125
           +   S T AD                                                  
Sbjct: 66  STGPSTTVADQIKKDQVIDPENMQRITRPHEDVRNTSSKCPAGKVSPSWNDYRNHLKYKK 125

Query: 126 ------------------------------------------------------------ 165
                                                                       
Sbjct: 126 KDLKLQELISHMHTEEANRLKDKLASQNLNSVNAYLVESSIVNRDRTKQEKGHKGKNSEK 185

[Close]

BLAST of Moc05g25680 vs. ExPASy TrEMBL
Match: A0A5D3D7X7 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00700 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-29
Identity = 90/219 (41.10%), Postives = 112/219 (51.14%), Query Frame = 0


Query: 6   SGKALADLSKLEPLDGSNYRRWYQKLLIFFEQLEIDYILTTAQP---PVVATTTTADQST 65
           S K L DLSKLEPLDG+NYR W QKLLIFFEQLE+DY+LTT  P   P   T+T ++  +
Sbjct: 6   SNKILPDLSKLEPLDGTNYRHWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTYSNPES 65

Query: 66  AMASATTA------------DP-------------------------------------- 125
           +  S TT             DP                                      
Sbjct: 66  STGSPTTVAVADQVKKDQVIDPEKYAKDNKTVRGHLLNHMSEPMFDLFVVQKSAKDIWST 125

Query: 126 ---GTSTVAVGGHKSYQCIQRKYKRPTPQAN----LAETDDIIAAVVVKANLVENKSDWI 165
                 T    GHK     +R++K    Q      ++E D  I A +++ANL+ENK+DWI
Sbjct: 126 LESRDRTKQEKGHKGKNSEKRQFKTTRGQIKKKKLVSEQDSEIIAAIIEANLIENKTDWI 185

The following BLAST results are available for this feature:

BLAST of Moc05g25680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157414.1	9.4e-52	91.67	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]	[more]
KAA0038241.1	1.0e-37	57.23	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048277.1	1.3e-32	37.63	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06658.1	6.0e-30	35.52	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0041580.1	2.3e-29	41.10	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19676.1 ty1-cop...	[more]

BLAST of Moc05g25680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g25680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWE9	4.6e-52	91.67	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia...	[more]
A0A5A7T9C8	4.9e-38	57.23	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U214	6.2e-33	37.63	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C674	2.9e-30	35.52	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D7X7	1.1e-29	41.10	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Moc05g25680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 209..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..299
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..295
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 97..165
None	No IPR available	PANTHER	PTHR47592:SF5	OS08G0421300 PROTEIN	coord: 97..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g25680.1	Moc05g25680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding