Moc05g25470 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g25470
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr5: 18071035 .. 18071854 (-)
RNA-Seq Expression	Moc05g25470
Synteny	Moc05g25470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCCTCCATTGTTTTGCAACGTGAGCTTTCATACACGGTCGGCGTGTCGTCCTGGAGCGACCACCCCTACGGAGGGTCTGTTGTATGGAATCAAAATCAGGACGAACTCCAGAAATGTATAAGGTTTCTTAGGTTTTGCACCAATATTTATCCTTCCCTACAACAGGTTTATTGGAGCGGACCTGTGGGATCTGAAAATGGCAGGTCACACTTACGAGAAGTTATTAAGTTTGTTAGTAACTCCTTGACCAAATGAACGATGACTAACTGTTATAGGAATAAGAGTTATTCTAGTATAATATTTAGTTGAGAATGTCTCAATTCAGTGAAGGAGTAGCTGACTGCCTCACAGTAGCTGTTGCTCTAAATCACTTAAGGATCGTCGCAAAAATAATCTTGATTGATAGGGTGCATTATTATTATTATTATTATTTTGCTAAAATTGATTTGGTTTTAACGGGTAGTGCAAGTGTCTTATATAGATTTGTTTATGTTTTAGGATGTCGAAATCTATTGCTCTACTTGTCGTCGAAAAACTTAACGATGAAAATTACACACAATGGAGTGTCCTAGTTGAGGAGTGTCCTCAGGCTCCCACGCCTAATGCAGTCCAAGCCAGTCAGGATGCCTATGATAGATGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCAAACATATCTGATGTGCTGGCCAAGAAGCATGAGAGCATAATCACCGTAAGGGAGATCATGAACTCGTTGCAGGAAGACAGCCATCCATTCAAGCCCGACACAATGCCCTCAAGTTCATTTACAATTCCTGCATGA

mRNA sequence

ATGATCTCCTCCATTGTTTTGCAACGTGAGCTTTCATACACGGTCGGCGTGTCGTCCTGGAGCGACCACCCCTACGGAGGGTCTGTTGTATGGAATCAAAATCAGGACGAACTCCAGAAATGTATAAGGTTTCTTAGGATGTCGAAATCTATTGCTCTACTTGTCGTCGAAAAACTTAACGATGAAAATTACACACAATGGAGTGTCCTAGTTGAGGAGTGTCCTCAGGCTCCCACGCCTAATGCAGTCCAAGCCAGTCAGGATGCCTATGATAGATGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCAAACATATCTGATGTGCTGGCCAAGAAGCATGAGAGCATAATCACCGTAAGGGAGATCATGAACTCGTTGCAGGAAGACAGCCATCCATTCAAGCCCGACACAATGCCCTCAAGTTCATTTACAATTCCTGCATGA

Coding sequence (CDS)

ATGATCTCCTCCATTGTTTTGCAACGTGAGCTTTCATACACGGTCGGCGTGTCGTCCTGGAGCGACCACCCCTACGGAGGGTCTGTTGTATGGAATCAAAATCAGGACGAACTCCAGAAATGTATAAGGTTTCTTAGGATGTCGAAATCTATTGCTCTACTTGTCGTCGAAAAACTTAACGATGAAAATTACACACAATGGAGTGTCCTAGTTGAGGAGTGTCCTCAGGCTCCCACGCCTAATGCAGTCCAAGCCAGTCAGGATGCCTATGATAGATGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCAAACATATCTGATGTGCTGGCCAAGAAGCATGAGAGCATAATCACCGTAAGGGAGATCATGAACTCGTTGCAGGAAGACAGCCATCCATTCAAGCCCGACACAATGCCCTCAAGTTCATTTACAATTCCTGCATGA

Protein sequence

MISSIVLQRELSYTVGVSSWSDHPYGGSVVWNQNQDELQKCIRFLRMSKSIALLVVEKLNDENYTQWSVLVEECPQAPTPNAVQASQDAYDRWIKANDKAKVYILANISDVLAKKHESIITVREIMNSLQEDSHPFKPDTMPSSSFTIPA

Homology

[Close]

BLAST of Moc05g25470 vs. NCBI nr
Match: XP_022156751.1 (uncharacterized protein LOC111023591 [Momordica charantia])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-26
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 47  MSKSIALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDR 106
           MSKSIALL  +KLND+NYTQW               VL E+CPQAPT NA +ASQDAYDR
Sbjct: 1   MSKSIALLAAKKLNDKNYTQWKTNLNTILVVDDLRFVLTEKCPQAPTSNAARASQDAYDR 60

Query: 107 WIKANDKAKVYILANISDVLAKKHESIITVREIMNSLQE 132
           WIKANDKAK+YILA IS+VLAKKH+S++T REIM+SLQ+
Sbjct: 61  WIKANDKAKIYILATISNVLAKKHKSMVTAREIMDSLQD 99

[Close]

BLAST of Moc05g25470 vs. NCBI nr
Match: XP_022157449.1 (uncharacterized protein LOC111024145 [Momordica charantia])

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-25
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 38  LQKCIRFLRMSKSIALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAV 97
           +Q  + F   +  IALL  EK N ENYTQW               +L EECPQAPTPNA 
Sbjct: 32  IQTYLYFSTSTSIIALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAA 91

Query: 98  QASQDAYDRWIKANDKAKVYILANISDVLAKKHESIITVREIMNSLQE 132
           +AS+DAYDRWIKANDKA VYIL +ISDVL+KKHES++T REIM+SLQ+
Sbjct: 92  RASRDAYDRWIKANDKANVYILTSISDVLSKKHESMVTAREIMDSLQD 139

[Close]

BLAST of Moc05g25470 vs. NCBI nr
Match: XP_022158202.1 (uncharacterized protein LOC111024739 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 51  IALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDRWIKA 110
           IALL +EKLN +NYTQW               VL EEC Q PTPNAV+AS+DAYDRWIKA
Sbjct: 6   IALLAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYDRWIKA 65

Query: 111 NDKAKVYILANISDVLAKKHESIITVREIMNSLQE 132
           NDKAKVYI A+ISDVLAKKH+ ++T REIM+SL++
Sbjct: 66  NDKAKVYIFASISDVLAKKHDRMVTTREIMDSLRD 100

[Close]

BLAST of Moc05g25470 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-20
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 51  IALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDRWIKA 110
           IALL  +KLN ENY QW               VL E+CPQAP  NA  A ++AYDRWIK+
Sbjct: 6   IALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYDRWIKS 65

Query: 111 NDKAKVYILANISDVLAKKHESIITVREIMNSLQ 131
           NDKAKVYILA+ISDVLAKKHE  +T +EIM+SLQ
Sbjct: 66  NDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQ 99

[Close]

BLAST of Moc05g25470 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 6.1e-20
Identity = 58/94 (61.70%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 51  IALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDRWIKA 110
           IALL  ++LN ENY QW               VL E+CPQA  PNA  A + AYDRWIKA
Sbjct: 6   IALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYDRWIKA 65

Query: 111 NDKAKVYILANISDVLAKKHESIITVREIMNSLQ 131
           NDKAKVYILA+ISDVLAKKHE  IT +EIM+SLQ
Sbjct: 66  NDKAKVYILASISDVLAKKHEDTITAKEIMDSLQ 99

[Close]

BLAST of Moc05g25470 vs. ExPASy TrEMBL
Match: A0A6J1DVX8 (uncharacterized protein LOC111023591 OS=Momordica charantia OX=3673 GN=LOC111023591 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.5e-27
Identity = 66/99 (66.67%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 47  MSKSIALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDR 106
           MSKSIALL  +KLND+NYTQW               VL E+CPQAPT NA +ASQDAYDR
Sbjct: 1   MSKSIALLAAKKLNDKNYTQWKTNLNTILVVDDLRFVLTEKCPQAPTSNAARASQDAYDR 60

Query: 107 WIKANDKAKVYILANISDVLAKKHESIITVREIMNSLQE 132
           WIKANDKAK+YILA IS+VLAKKH+S++T REIM+SLQ+
Sbjct: 61  WIKANDKAKIYILATISNVLAKKHKSMVTAREIMDSLQD 99

[Close]

BLAST of Moc05g25470 vs. ExPASy TrEMBL
Match: A0A6J1DWI4 (uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024145 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.1e-26
Identity = 64/108 (59.26%), Postives = 76/108 (70.37%), Query Frame = 0


Query: 38  LQKCIRFLRMSKSIALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAV 97
           +Q  + F   +  IALL  EK N ENYTQW               +L EECPQAPTPNA 
Sbjct: 32  IQTYLYFSTSTSIIALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAA 91

Query: 98  QASQDAYDRWIKANDKAKVYILANISDVLAKKHESIITVREIMNSLQE 132
           +AS+DAYDRWIKANDKA VYIL +ISDVL+KKHES++T REIM+SLQ+
Sbjct: 92  RASRDAYDRWIKANDKANVYILTSISDVLSKKHESMVTAREIMDSLQD 139

[Close]

BLAST of Moc05g25470 vs. ExPASy TrEMBL
Match: A0A6J1DWL4 (uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024739 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.6e-24
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 51  IALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDRWIKA 110
           IALL +EKLN +NYTQW               VL EEC Q PTPNAV+AS+DAYDRWIKA
Sbjct: 6   IALLAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYDRWIKA 65

Query: 111 NDKAKVYILANISDVLAKKHESIITVREIMNSLQE 132
           NDKAKVYI A+ISDVLAKKH+ ++T REIM+SL++
Sbjct: 66  NDKAKVYIFASISDVLAKKHDRMVTTREIMDSLRD 100

[Close]

BLAST of Moc05g25470 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-20
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 51  IALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDRWIKA 110
           IALL  +KLN ENY QW               VL E+CPQAP  NA  A ++AYDRWIK+
Sbjct: 6   IALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYDRWIKS 65

Query: 111 NDKAKVYILANISDVLAKKHESIITVREIMNSLQ 131
           NDKAKVYILA+ISDVLAKKHE  +T +EIM+SLQ
Sbjct: 66  NDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQ 99

[Close]

BLAST of Moc05g25470 vs. ExPASy TrEMBL
Match: A0A6J1DW68 (uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024637 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 51  IALLVVEKLNDENYTQWS--------------VLVEECPQAPTPNAVQASQDAYDRWIKA 110
           I LLV +KLNDENY QW               VL E+CPQAP PNA  A ++ YDRWIKA
Sbjct: 6   ITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYDRWIKA 65

Query: 111 NDKAKVYILANISDVLAKKHESIITVREIMNSLQ 131
           NDKAKV ILA+ISDVLAKKHE+ +  +EIM+SLQ
Sbjct: 66  NDKAKVDILASISDVLAKKHENSVITKEIMDSLQ 99

The following BLAST results are available for this feature:

BLAST of Moc05g25470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156751.1	2.0e-26	66.67	uncharacterized protein LOC111023591 [Momordica charantia]	[more]
XP_022157449.1	1.7e-25	59.26	uncharacterized protein LOC111024145 [Momordica charantia]	[more]
XP_022158202.1	1.6e-23	64.21	uncharacterized protein LOC111024739 [Momordica charantia]	[more]
XP_022158197.1	2.8e-20	60.64	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
XP_022152352.1	6.1e-20	61.70	uncharacterized protein LOC111020095 [Momordica charantia]	[more]

BLAST of Moc05g25470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g25470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVX8	9.5e-27	66.67	uncharacterized protein LOC111023591 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DWI4	8.1e-26	59.26	uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWL4	7.6e-24	64.21	uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWL0	1.3e-20	60.64	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DW68	3.0e-20	60.64	uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc05g25470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g25470.1	Moc05g25470.1	mRNA