Moc05g22820 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc05g22820
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr5: 16311288 .. 16312849 (-)
RNA-Seq ExpressionMoc05g22820
SyntenyMoc05g22820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGACGGATATCAAGCACACCATTATTATGATGGGGTCCTGAAGTTCAATGGAGAGAATTTCAGTTTTTGGAAAATGCAGGTAAAGGATCTTCTTACATGCAAGAAGATACACAAGACTTTAGGGGAGAGACCAGCAGGGATGCTGGACAAGGATTGGAATGAGATGGATGAGCAGGCCGGTGCCAACATCATAATGACATTATCAATGAATGTTTGTAGTCTGGTGGCGAAAGAGACTACATCGAAAGATTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGTCAATACAAAGATACTTCTATGGACGAAGTATTTTAATATCCACATGGAGGAGAGAATCTCGGTGAATTCCCACATCAATGAACTCACTGATATCTTGAATAAGTTAGAAGGGATGAGCGTCAAGATTGACGAGGAGGTGAAAGTTATGAGGTTGTTAACGTCTTTGCCTGACAGTTGGGAGAAGATGAAGACCGCGGTGTCGAATTCGCTAGGGGAAAATAGCTTGAAATTTACAGCTATTTGTTATGCCGCCATATCTGAGGAAGCCCGGAGAAAATTAGGGAAAATTTCTGCATCTACTTCAGGGGCAGAAACCGGGGTTGAATCAGCTTTGGTAGCTCAGAACAAAGGGAAGGCAAATATGAGTTATAATGGGAAACAGCAGCAGAGATATAGCAGGGGTAGTGGGAGTTCCAATGGAGAAGTAGAGTATTATTACTGCCACAAAAAGGGATACATTAAACACTTTTGTAGGAAGTTTAAAGAAGATCTTGAGAAGGGGAATACTACTGCAAACGTTGTAACAGAAGAAGAACGGATTGAAGAGTTTCTGGCTTGTGTTCAGAGGAACATATCTGTAGACCAATGGGTGGTTGACACTGGACGTTGGTTCTCATCTCTTAGTGTAGGTGATTATGGCTCAGTGAAGATGGGGAATGAGAGTATCTCCAAGGTGAGAGGAATTGAAGATGTTTGTTTGAAGACAGGCAAAGGGGACGAGTTGGTGCTACGAGGTGTTAGGTATATTCCTAGCTTCAGATTTAATTTGTTATCCGCAGGAAAGCTAGGTGACGATGGCTACAGCAGTGAGTTTAATGGGGGTTGCTGGAAGCTCGGAGGGAATCCAGGGTGGTGGCAATAGGCCACAAAAGATCTTCTGTTTATGTATCAGAATTTGGGGTTGCCAAGGGTTCACTGAGACAGACGATGCACATAGTAGCAGCAGATGGTTCAGGGCGAGACCTTAGAGGATCAGCAGCAATGATGGCCAGAACAGATCAGAAGAATCTGCCATCAGCTCAAGTAAAACAGTTGAGAAGTACAGAAAAGCGAAACAAGAATTTGATAGGCTATCGAGTTCATACCTCAGTTGTCAGACGTTCAGGCGAGCTGATGAAGTTGCATAGGCGAATTAGTGCATTGAAGGGTACGAGTTATGTTTCTAGTGTGGCGACTGACTTGGGTGGAAGCGTCAAGTCATCAGAGGAATCTTCCTTCAGAGGTCGTTGGGTTCGATCGAGAAAGGAAGTGACGGGGACCACTTAA

mRNA sequence

ATGTGTGACGGATATCAAGCACACCATTATTATGATGGGGTCCTGAAGTTCAATGGAGAGAATTTCAGTTTTTGGAAAATGCAGGTAAAGGATCTTCTTACATGCAAGAAGATACACAAGACTTTAGGGGAGAGACCAGCAGGGATGCTGGACAAGGATTGGAATGAGATGGATGAGCAGGCCGGTGCCAACATCATAATGACATTATCAATGAATGTTTGTAGTCTGGTGGCGAAAGAGACTACATCGAAAGATTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGTCAATACAAAGATACTTCTATGGACGAAGTATTTTAATATCCACATGGAGGAGAGAATCTCGGTGAATTCCCACATCAATGAACTCACTGATATCTTGAATAAGTTAGAAGGGATGAGCGTCAAGATTGACGAGGAGGTGAAAGTTATGAGGTTGTTAACGTCTTTGCCTGACAGTTGGGAGAAGATGAAGACCGCGGTGTCGAATTCGCTAGGGGAAAATAGCTTGAAATTTACAGCTATTTGTTATGCCGCCATATCTGAGGAAGCCCGGAGAAAATTAGGGAAAATTTCTGCATCTACTTCAGGGGCAGAAACCGGGGTTGAATCAGCTTTGGTAGCTCAGAACAAAGGGAAGGCAAATATGAGTTATAATGGGAAACAGCAGCAGAGATATAGCAGGGGTAGTGGGAGTTCCAATGGAGAAGTAGAGTATTATTACTGCCACAAAAAGGGATACATTAAACACTTTTGTAGGAAGTTTAAAGAAGATCTTGAGAAGGGGAATACTACTGCAAACGTTGTAACAGAAGAAGAACGGATTGAAGAGTTTCTGGCTTGTGTTCAGAGGAACATATCTGTAGACCAATGGGTGGTTGACACTGGACGTTGGGTGGTGGCAATAGGCCACAAAAGATCTTCTGTTTATGTATCAGAATTTGGGGTTGCCAAGGGTTCACTGAGACAGACGATGCACATAGTAGCAGCAGATGGTTCAGGGCGAGACCTTAGAGGATCAGCAGCAATGATGGCCAGAACAGATCAGAAGAATCTGCCATCAGCTCAAGTAAAACAGTTGAGAAGTACAGAAAAGCGAAACAAGAATTTGATAGGCTATCGAGTTCATACCTCAGTTGTCAGACGTTCAGGCGAGCTGATGAAGTTGCATAGGCGAATTAGTGCATTGAAGGGTACGAGTTATGTTTCTAGTGTGGCGACTGACTTGGGTGGAAGCGTCAAGTCATCAGAGGAATCTTCCTTCAGAGGTCGTTGGGTTCGATCGAGAAAGGAAGTGACGGGGACCACTTAA

Coding sequence (CDS)

ATGTGTGACGGATATCAAGCACACCATTATTATGATGGGGTCCTGAAGTTCAATGGAGAGAATTTCAGTTTTTGGAAAATGCAGGTAAAGGATCTTCTTACATGCAAGAAGATACACAAGACTTTAGGGGAGAGACCAGCAGGGATGCTGGACAAGGATTGGAATGAGATGGATGAGCAGGCCGGTGCCAACATCATAATGACATTATCAATGAATGTTTGTAGTCTGGTGGCGAAAGAGACTACATCGAAAGATTTGTTGAAGGCCTTGCAAGACAGGTATGAAAAACCTTCTGTCAATACAAAGATACTTCTATGGACGAAGTATTTTAATATCCACATGGAGGAGAGAATCTCGGTGAATTCCCACATCAATGAACTCACTGATATCTTGAATAAGTTAGAAGGGATGAGCGTCAAGATTGACGAGGAGGTGAAAGTTATGAGGTTGTTAACGTCTTTGCCTGACAGTTGGGAGAAGATGAAGACCGCGGTGTCGAATTCGCTAGGGGAAAATAGCTTGAAATTTACAGCTATTTGTTATGCCGCCATATCTGAGGAAGCCCGGAGAAAATTAGGGAAAATTTCTGCATCTACTTCAGGGGCAGAAACCGGGGTTGAATCAGCTTTGGTAGCTCAGAACAAAGGGAAGGCAAATATGAGTTATAATGGGAAACAGCAGCAGAGATATAGCAGGGGTAGTGGGAGTTCCAATGGAGAAGTAGAGTATTATTACTGCCACAAAAAGGGATACATTAAACACTTTTGTAGGAAGTTTAAAGAAGATCTTGAGAAGGGGAATACTACTGCAAACGTTGTAACAGAAGAAGAACGGATTGAAGAGTTTCTGGCTTGTGTTCAGAGGAACATATCTGTAGACCAATGGGTGGTTGACACTGGACGTTGGGTGGTGGCAATAGGCCACAAAAGATCTTCTGTTTATGTATCAGAATTTGGGGTTGCCAAGGGTTCACTGAGACAGACGATGCACATAGTAGCAGCAGATGGTTCAGGGCGAGACCTTAGAGGATCAGCAGCAATGATGGCCAGAACAGATCAGAAGAATCTGCCATCAGCTCAAGTAAAACAGTTGAGAAGTACAGAAAAGCGAAACAAGAATTTGATAGGCTATCGAGTTCATACCTCAGTTGTCAGACGTTCAGGCGAGCTGATGAAGTTGCATAGGCGAATTAGTGCATTGAAGGGTACGAGTTATGTTTCTAGTGTGGCGACTGACTTGGGTGGAAGCGTCAAGTCATCAGAGGAATCTTCCTTCAGAGGTCGTTGGGTTCGATCGAGAAAGGAAGTGACGGGGACCACTTAA

Protein sequence

MCDGYQAHHYYDGVLKFNGENFSFWKMQVKDLLTCKKIHKTLGERPAGMLDKDWNEMDEQAGANIIMTLSMNVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDILNKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRKLGKISASTSGAETGVESALVAQNKGKANMSYNGKQQQRYSRGSGSSNGEVEYYYCHKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAIGHKRSSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRGSAAMMARTDQKNLPSAQVKQLRSTEKRNKNLIGYRVHTSVVRRSGELMKLHRRISALKGTSYVSSVATDLGGSVKSSEESSFRGRWVRSRKEVTGTT
Homology
BLAST of Moc05g22820 vs. NCBI nr
Match: RVW65849.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 181.0 bits (458), Expect = 2.2e-41
Identity = 121/339 (35.69%), Postives = 183/339 (53.98%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ+KD L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIKDYLYGRKLHLPLLGTKPKSMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    +++E RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAKEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQSWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +ANVVTEE  +++ L  V  +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSLKKKNE--DDSANVVTEE--VQDALLLVV-DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. NCBI nr
Match: CAN81130.1 (hypothetical protein VITISV_003944 [Vitis vinifera])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-41
Identity = 121/339 (35.69%), Postives = 181/339 (53.39%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ++D L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L TK FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTXDLMKALSGMYEKPSANNKVHLMTKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +AN VTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. NCBI nr
Match: KAG7584790.1 (Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 180.6 bits (457), Expect = 2.9e-41
Identity = 114/312 (36.54%), Postives = 169/312 (54.17%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIHKTLGERPAGMLDKDWNEMDEQAGANIIMTLSMN 72
           G+ KF+G +F+FW+MQ++D L  KK+H+ L  +P  M  ++W+ +D Q    I +TLS N
Sbjct: 10  GIGKFDGTDFAFWRMQIEDYLYGKKLHQPLSMKPEKMAQEEWDLLDRQVLGVIRLTLSKN 69

Query: 73  VCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDILN 132
           V   VAKE T++ L+K L D YEKPS N K+ L  K F++ MEE   V +H+NE   I+N
Sbjct: 70  VAHNVAKEKTTEGLMKVLSDMYEKPSANNKVFLMKKLFHLKMEEGGPVATHVNEFNTIVN 129

Query: 133 KLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRKL 192
           +L  + ++ D+EV+ + LL SLP+SWE M+ AVSNS+G   LKF  +    + EE RR  
Sbjct: 130 QLSSVEIEFDDEVRALILLASLPNSWEPMRAAVSNSVGNQKLKFVDVRDRILGEEVRR-- 189

Query: 193 GKISASTSGAETGVESALVAQNKGKANMSYN---GKQQQRYSRGSGSSNGEVEYYYCHKK 252
                     ET + SA   +N+G+     N   G+ + R  +G   S   VE + C K 
Sbjct: 190 ------IDTGETSMSSAFNVENRGRDQNRRNQNRGRSKSRNGKGQSKSRKPVECWNCGKT 249

Query: 253 GYIKHFC-RKFKEDLEKGNTTANVVTEE---------------ERIEEFLACVQRNIS-- 301
           G+ K  C    K++  KG   AN VT+E               E  +  +   + +IS  
Sbjct: 250 GHFKSNCWAPPKKENNKGG-GANAVTDEIADALLVFVDSPRKGETHDTAVNTTKASISYV 309

BLAST of Moc05g22820 vs. NCBI nr
Match: CAN60106.1 (hypothetical protein VITISV_028182 [Vitis vinifera])

HSP 1 Score: 179.9 bits (455), Expect = 4.9e-41
Identity = 121/339 (35.69%), Postives = 181/339 (53.39%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ++D L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTTDLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +ANVVTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANVVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. NCBI nr
Match: RVW80345.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 179.9 bits (455), Expect = 4.9e-41
Identity = 120/339 (35.40%), Postives = 180/339 (53.10%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ++D L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMTENASVTQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +AN VTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 SHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.9e-22
Identity = 81/303 (26.73%), Postives = 151/303 (49.83%), Query Frame = 0

Query: 14  VLKFNGEN-FSFWKMQVKDLLTCKKIHKTL---GERPAGMLDKDWNEMDEQAGANIIMTL 73
           V KFNG+N FS W+ +++DLL  + +HK L    ++P  M  +DW ++DE+A + I + L
Sbjct: 8   VAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHL 67

Query: 74  SMNVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTD 133
           S +V + +  E T++ +   L+  Y   ++  K+ L  + + +HM E  +  SH+N    
Sbjct: 68  SDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNG 127

Query: 134 ILNKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEAR 193
           ++ +L  + VKI+EE K + LL SLP S++ + T + +  G+ +++   +  A +  E  
Sbjct: 128 LITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKM 187

Query: 194 RKLGKISASTSGAETGVESALVAQNKGKANMSYNGKQQQRYSRGSGSSNGEVEY---YYC 253
           RK         G       AL+ + +G++    +    +  +RG   +  +      Y C
Sbjct: 188 RK----KPENQG------QALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNC 247

Query: 254 HKKGYIKHFC---RKFKEDL---EKGNTTANVVTEEERIEEFL----ACVQRNISVDQWV 300
           ++ G+ K  C   RK K +    +  + TA +V   + +  F+     C+  +    +WV
Sbjct: 248 NQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWV 298

BLAST of Moc05g22820 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-13
Identity = 58/252 (23.02%), Postives = 122/252 (48.41%), Query Frame = 0

Query: 17  FNGENFSFWKMQVKDLLTCKKIHKTLGERPAGMLDKDWNEMDEQAGANIIMTLSMNVCSL 76
           F+GE ++ WK +++ LL  + + K +       +D  W + +  A + II  LS +  + 
Sbjct: 11  FDGEKYAIWKFRIRALLAEQDVLKVVDGLMPNEVDDSWKKAERCAKSTIIEYLSDSFLNF 70

Query: 77  VAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDILNKLEG 136
              + T++ +L+ L   YE+ S+ +++ L  +  ++ +   +S+ SH +   +++++L  
Sbjct: 71  ATSDITARQILENLDAVYERKSLASQLALRKRLLSLKLSSEMSLLSHFHIFDELISELLA 130

Query: 137 MSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRKLGKIS 196
              KI+E  K+  LL +LP  ++ + TA+  +L E +L    +    + +E      KI 
Sbjct: 131 AGAKIEEMDKISHLLITLPSCYDGIITAI-ETLSEENLTLAFVKNRLLDQEI-----KIK 190

Query: 197 ASTSGAETGVESALVAQNKGK-ANMSYNGKQQQRYSRGSGSSNGEVEYYYCHKKGYIKHF 256
              +     V +A+V  N     N  +  +  +      G+S  +V+ ++C ++G+IK  
Sbjct: 191 NDHNDTSKKVMNAIVHNNNNTYKNNLFKNRVTKPKKIFKGNSKYKVKCHHCGREGHIKKD 250

Query: 257 CRKFKEDLEKGN 268
           C  +K  L   N
Sbjct: 251 CFHYKRILNNKN 256

BLAST of Moc05g22820 vs. ExPASy TrEMBL
Match: A0A7N2R8N6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.8e-42
Identity = 120/339 (35.40%), Postives = 184/339 (54.28%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F FW+MQ++D L  +K+H   LGE+P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFGFWRMQIEDYLYGRKLHLPLLGEKPEAMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQR---YSRGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+ + R   ++R    S  +++ + C
Sbjct: 190 -------DAGETSGSGSALTLETRGRGNNRNSNWGRSKSRNSNWNRSKSRSGQQIQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ ++ C+  K+  E  + +ANVVTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFRNQCKSPKKKNE--DDSANVVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. ExPASy TrEMBL
Match: A0A438G0V1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4008 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-41
Identity = 121/339 (35.69%), Postives = 183/339 (53.98%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ+KD L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIKDYLYGRKLHLPLLGTKPKSMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    +++E RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAKEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQSWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +ANVVTEE  +++ L  V  +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSLKKKNE--DDSANVVTEE--VQDALLLVV-DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. ExPASy TrEMBL
Match: A5BGX3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003944 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-41
Identity = 121/339 (35.69%), Postives = 181/339 (53.39%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ++D L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L TK FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTXDLMKALSGMYEKPSANNKVHLMTKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +AN VTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. ExPASy TrEMBL
Match: A5ADV4 (CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_028182 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-41
Identity = 121/339 (35.69%), Postives = 181/339 (53.39%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ++D L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTTDLMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +ANVVTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANVVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 PHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

BLAST of Moc05g22820 vs. ExPASy TrEMBL
Match: A0A438H787 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2629 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.4e-41
Identity = 120/339 (35.40%), Postives = 180/339 (53.10%), Query Frame = 0

Query: 13  GVLKFNGENFSFWKMQVKDLLTCKKIH-KTLGERPAGMLDKDWNEMDEQAGANIIMTLSM 72
           G+ KF+G +F++W+MQ++D L  +K+H   LG +P  M  ++W  +D Q    I +TLS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 73  NVCSLVAKETTSKDLLKALQDRYEKPSVNTKILLWTKYFNIHMEERISVNSHINELTDIL 132
           +V   V KE T+ DL+KAL   YEKPS N K+ L  K FN+ M E  SV  H+NE   I 
Sbjct: 70  SVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKKLFNLKMTENASVTQHLNEFNTIT 129

Query: 133 NKLEGMSVKIDEEVKVMRLLTSLPDSWEKMKTAVSNSLGENSLKFTAICYAAISEEARRK 192
           N+L  + +  D+E++ + +L SLP+SWE M+ AVSNS G+  LK+  I    ++EE RR+
Sbjct: 130 NQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRR 189

Query: 193 LGKISASTSGAETGVESALVAQNKGKAN--MSYNGKQQQRYS---RGSGSSNGEVEYYYC 252
                   +G  +G  SAL  + +G+ N   S  G+   R S   R    S  +V+ + C
Sbjct: 190 -------DAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNC 249

Query: 253 HKKGYIKHFCRKFKEDLEKGNTTANVVTEEERIEEFLACVQRNISVDQWVVDTGRWVVAI 312
            K G+ K  C+  K+  E  + +AN VTEE +    LA    +  +D WV+D+G      
Sbjct: 250 GKTGHFKRQCKSPKKKNE--DDSANAVTEEVQDALLLAV---DSPLDDWVLDSGASFHTT 309

Query: 313 GHKR--SSVYVSEFGVAKGSLRQTMHIVAADGSGRDLRG 344
            H+    +    +FG           +  ADGS  D+ G
Sbjct: 310 SHREIIQNYVAGDFG----------KVYLADGSALDVVG 326

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW65849.12.2e-4135.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
CAN81130.12.9e-4135.69hypothetical protein VITISV_003944 [Vitis vinifera][more]
KAG7584790.12.9e-4136.54Zinc finger CCHC-type superfamily [Arabidopsis thaliana x Arabidopsis arenosa][more]
CAN60106.14.9e-4135.69hypothetical protein VITISV_028182 [Vitis vinifera][more]
RVW80345.14.9e-4135.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109786.9e-2226.73Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.6e-1323.02Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A7N2R8N64.8e-4235.40Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A438G0V11.1e-4135.69Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A5BGX31.4e-4135.69Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003944 PE=4 SV=1[more]
A5ADV42.4e-4135.69CCHC-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_028182 ... [more]
A0A438H7872.4e-4135.40Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 54..191
e-value: 2.9E-27
score: 95.1
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 15..272
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 15..272

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc05g22820.1Moc05g22820.1mRNA