Moc05g13890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	SWIM-type domain-containing protein
Location	chr5: 10651870 .. 10653129 (+)
RNA-Seq Expression	Moc05g13890
Synteny	Moc05g13890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGCCACCTGGCACCTTGGTCGTCTCTTCATGAGACGACCTAAGTTAGGGTTTTATTTTAAAACCCCTAACATATCTGCCCCACCACCGCTCCAACCTTCTCTCCCCCAAATCGCCGCCAACATTTCTCGGTCCAGTCGCTGCCGCCGATCACCGCTCCATCCAGTCGCCGCCGCCGATCATTGCTCCGTCCAGCCGCCGCCGCCTTTGGTAAGTAAATGATGAGATGTTTTTTTATTTTCTTCTTTTTTGTTTCTGTTTCTGTTTTTTCTTTTTCTTTTTTTTTCTTTTTTTTAATAATTTTAGTTTTACAACATGATTACAGGACCACTCGCATCAATTCCAATTTTTTTGGGACCACTTGTCATAGGAAAATGTTAGTTTTTTCTCTGTTGTATTTATTTATTATTCATCTTTTTTTTAGATTCATATCATGATTAGTATTGTTTTGTAGTATAGCAATATTACAATGATTTTGTCGTTTTATGTTTATGTTATGATTTTCAGTTTTTTGACTAGTTTTCTGTTTTTTTATTATTATATTAAATTGATAAATGAATTTAATAACATTAATAAATTTAGAATTAACTAGTTTAAGTAATGTTAACAAAGTTAGATTTAGATATTTGTAAGTAATGTAATTAATTGGTTGATTATTATTAATTAGTTAGTTAACTAAAACTTTTTAATTTATCTTTTATTAATTTGTATAATTAAATTTAGTTACCAAATTTAACTTTTGTTTGTTATGTTCTAGGATAGAATATGGTAGCTAAATGTTTGACAATTGTTTTGTATATGAATGGTTGTATGGTGGAAGGTGTGAATGGAGTTGAATATAATCGACCGCCATGTGGAGGTTTCACTGTTAATAGTGGTATTGATTTTGGACATTTTATTGAAATGGTTGGATTATCATTGAACATAGATGTGAGCGGTAGTGAATTAGAAATAGTTTATAGACATCCTACTCTCACACCTTCAGGATCAACTAAGTACATTTCTATTCCTATTTCGAATCACTATGCATTAGAGTTGATGTTCTCTATTGCAGTGCCCTCTCCAGACATGGTGGAATTATTTGTGTGTGCTAGAAACATAGTTAATGACACACCTAGCCAATGTCTCAACGAGAGCCAATGCCTTGACCCTGAGCCTGAACCAAATGTTCCCCAAACTGATGATCAACCAAATGTTCTCCAAACTGATGAACAACCAAATGTTCCCCAAACTGATGATCAACCAATTGTTCCCTAA

mRNA sequence

ATGGGCGCCACCTGGCACCTTGGTCGTCTCTTCATGAGACGACCTAAGTTAGGGTTTTATTTTAAAACCCCTAACATATCTGCCCCACCACCGCTCCAACCTTCTCTCCCCCAAATCGCCGCCAACATTTCTCGGTCCAGTCGCTGCCGCCGATCACCGCTCCATCCAGTCGCCGCCGCCGATCATTGCTCCGTCCAGCCGCCGCCGCCTTTGAATATGGTAGCTAAATGTTTGACAATTGTTTTGTATATGAATGGTTGTATGGTGGAAGGTGTGAATGGAGTTGAATATAATCGACCGCCATGTGGAGGTTTCACTGTTAATAGTGGTATTGATTTTGGACATTTTATTGAAATGGTTGGATTATCATTGAACATAGATGTGAGCGGTAGTGAATTAGAAATAGTTTATAGACATCCTACTCTCACACCTTCAGGATCAACTAAGTACATTTCTATTCCTATTTCGAATCACTATGCATTAGAGTTGATGTTCTCTATTGCAGTGCCCTCTCCAGACATGGTGGAATTATTTGTGTGTGCTAGAAACATAGTTAATGACACACCTAGCCAATGTCTCAACGAGAGCCAATGCCTTGACCCTGAGCCTGAACCAAATGTTCCCCAAACTGATGATCAACCAAATGTTCTCCAAACTGATGAACAACCAAATGTTCCCCAAACTGATGATCAACCAATTGTTCCCTAA

Coding sequence (CDS)

ATGGGCGCCACCTGGCACCTTGGTCGTCTCTTCATGAGACGACCTAAGTTAGGGTTTTATTTTAAAACCCCTAACATATCTGCCCCACCACCGCTCCAACCTTCTCTCCCCCAAATCGCCGCCAACATTTCTCGGTCCAGTCGCTGCCGCCGATCACCGCTCCATCCAGTCGCCGCCGCCGATCATTGCTCCGTCCAGCCGCCGCCGCCTTTGAATATGGTAGCTAAATGTTTGACAATTGTTTTGTATATGAATGGTTGTATGGTGGAAGGTGTGAATGGAGTTGAATATAATCGACCGCCATGTGGAGGTTTCACTGTTAATAGTGGTATTGATTTTGGACATTTTATTGAAATGGTTGGATTATCATTGAACATAGATGTGAGCGGTAGTGAATTAGAAATAGTTTATAGACATCCTACTCTCACACCTTCAGGATCAACTAAGTACATTTCTATTCCTATTTCGAATCACTATGCATTAGAGTTGATGTTCTCTATTGCAGTGCCCTCTCCAGACATGGTGGAATTATTTGTGTGTGCTAGAAACATAGTTAATGACACACCTAGCCAATGTCTCAACGAGAGCCAATGCCTTGACCCTGAGCCTGAACCAAATGTTCCCCAAACTGATGATCAACCAAATGTTCTCCAAACTGATGAACAACCAAATGTTCCCCAAACTGATGATCAACCAATTGTTCCCTAA

Protein sequence

MGATWHLGRLFMRRPKLGFYFKTPNISAPPPLQPSLPQIAANISRSSRCRRSPLHPVAAADHCSVQPPPPLNMVAKCLTIVLYMNGCMVEGVNGVEYNRPPCGGFTVNSGIDFGHFIEMVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELFVCARNIVNDTPSQCLNESQCLDPEPEPNVPQTDDQPNVLQTDEQPNVPQTDDQPIVP

Homology

[Close]

BLAST of Moc05g13890 vs. NCBI nr
Match: KAA0041167.1 (uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-21
Identity = 63/152 (41.45%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 73  MVAKCLTIVLYMNGCMVEGVNGVEYNRPPCGGFT--VNSGIDFGHFIEMVGLSLNIDVSG 132
           M  K L  +L++NG M++G +G++Y++P CGGFT  VNSGI F  FIE+VG S+ ID+  
Sbjct: 1   MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 133 SELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELFVCARNIVNDTPS 192
           S++EI+YRHP LTPSG  +++  PI N  A++ MFSIA+P  +MV L+V    +  D   
Sbjct: 61  SDIEIIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRVSLDINL 120

Query: 193 QCLNESQCLDPEPEPNVPQTDDQPNVLQTDEQ 223
              +  Q L+   +  VP ++   +++  DE+
Sbjct: 121 NSKSFCQ-LEDRTQVIVPDSELVASLVYDDEE 151

[Close]

BLAST of Moc05g13890 vs. NCBI nr
Match: XP_022143566.1 (uncharacterized protein LOC111013435 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-16
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 117 IEMVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVE 176
           ++ VG+SLN+D+S ++ E+V RH + T SG +KY SIP+ NH AL+LMF+IA+  P +VE
Sbjct: 17  VQTVGVSLNVDMSKNKFELVCRHASQTLSGLSKYTSIPLENHNALDLMFAIALSCPQLVE 76

Query: 177 LFVCARNIVN-----DTPSQCLNESQCLDPEPE---PNVPQTDDQPNVLQTD 221
           L V  RN++N     + PSQCL  SQCLD EPE   P V   D+  +++  D
Sbjct: 77  LHVNVRNMINVSLDHEEPSQCLEHSQCLDLEPELVVPPVTHLDEDMDLIADD 128

[Close]

BLAST of Moc05g13890 vs. NCBI nr
Match: XP_022156564.1 (uncharacterized protein LOC111023439 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-12
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 128 VSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELFVCARNIVN- 187
           +S ++LE+ Y+HP+ T SGS KYI I + N  +L+LMFSIA+P P + ELFV  RN++N 
Sbjct: 1   MSMNKLELGYKHPSQTLSGSIKYIHIQLENQSSLDLMFSIALPCPQLAELFVNVRNMMNV 60

Query: 188 ----DTPSQCLNESQCLDPEPEPNVP 209
               + PS+CL+ SQCL PE E  VP
Sbjct: 61  SLNLEVPSKCLDHSQCLVPELELVVP 86

[Close]

BLAST of Moc05g13890 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-10
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 119 MVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELF 178
           MVGLSL +D+S S++EI+YRHP LT SG+ ++I  PISN   +  MFSIA+P P+MV L+
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFIPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 179 VCARNIVNDTPSQCLNE----SQCLDPEPEPNVPQTDDQPNVLQTDEQPNV-PQTDDQ 232
           V    +  DT      E     + +D EPE + P    +  ++ T+E      +TDD+
Sbjct: 61  VTVSMV--DTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFRTETDDE 116

[Close]

BLAST of Moc05g13890 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 5.3e-10
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 119 MVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELF 178
           MVGLSL +D+S S++EI+YRHP LT SG+ +++  PISN   +  MFSIA+P P+MV L+
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFMPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 179 VCARNIVNDTPSQCLNE----SQCLDPEPEPNVPQTDDQPNVLQTDEQPNV-PQTDDQ 232
           V    +  DT      E     + +D EPE + P    +  ++ T+E      +TDD+
Sbjct: 61  VTVSMV--DTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFRTETDDE 116

[Close]

BLAST of Moc05g13890 vs. ExPASy TrEMBL
Match: A0A5A7THR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00980 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 63/152 (41.45%), Postives = 97/152 (63.82%), Query Frame = 0


Query: 73  MVAKCLTIVLYMNGCMVEGVNGVEYNRPPCGGFT--VNSGIDFGHFIEMVGLSLNIDVSG 132
           M  K L  +L++NG M++G +G++Y++P CGGFT  VNSGI F  FIE+VG S+ ID+  
Sbjct: 1   MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 133 SELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELFVCARNIVNDTPS 192
           S++EI+YRHP LTPSG  +++  PI N  A++ MFSIA+P  +MV L+V    +  D   
Sbjct: 61  SDIEIIYRHPDLTPSGLIRFMPFPIPNEQAMKTMFSIAMPISNMVHLYVNVSRVSLDINL 120

Query: 193 QCLNESQCLDPEPEPNVPQTDDQPNVLQTDEQ 223
              +  Q L+   +  VP ++   +++  DE+
Sbjct: 121 NSKSFCQ-LEDRTQVIVPDSELVASLVYDDEE 151

[Close]

BLAST of Moc05g13890 vs. ExPASy TrEMBL
Match: A0A6J1CQN0 (uncharacterized protein LOC111013435 OS=Momordica charantia OX=3673 GN=LOC111013435 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 117 IEMVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVE 176
           ++ VG+SLN+D+S ++ E+V RH + T SG +KY SIP+ NH AL+LMF+IA+  P +VE
Sbjct: 17  VQTVGVSLNVDMSKNKFELVCRHASQTLSGLSKYTSIPLENHNALDLMFAIALSCPQLVE 76

Query: 177 LFVCARNIVN-----DTPSQCLNESQCLDPEPE---PNVPQTDDQPNVLQTD 221
           L V  RN++N     + PSQCL  SQCLD EPE   P V   D+  +++  D
Sbjct: 77  LHVNVRNMINVSLDHEEPSQCLEHSQCLDLEPELVVPPVTHLDEDMDLIADD 128

[Close]

BLAST of Moc05g13890 vs. ExPASy TrEMBL
Match: A0A6J1DTV0 (uncharacterized protein LOC111023439 OS=Momordica charantia OX=3673 GN=LOC111023439 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.6e-12
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 128 VSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELFVCARNIVN- 187
           +S ++LE+ Y+HP+ T SGS KYI I + N  +L+LMFSIA+P P + ELFV  RN++N 
Sbjct: 1   MSMNKLELGYKHPSQTLSGSIKYIHIQLENQSSLDLMFSIALPCPQLAELFVNVRNMMNV 60

Query: 188 ----DTPSQCLNESQCLDPEPEPNVP 209
               + PS+CL+ SQCL PE E  VP
Sbjct: 61  SLNLEVPSKCLDHSQCLVPELELVVP 86

[Close]

BLAST of Moc05g13890 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 119 MVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELF 178
           MVGLSL +D+S S++EI+YRHP LT SG+ ++I  PISN   +  MFSIA+P P+MV L+
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFIPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 179 VCARNIVNDTPSQCLNE----SQCLDPEPEPNVPQTDDQPNVLQTDEQPNV-PQTDDQ 232
           V    +  DT      E     + +D EPE + P    +  ++ T+E      +TDD+
Sbjct: 61  VTVSMV--DTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFRTETDDE 116

[Close]

BLAST of Moc05g13890 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 0


Query: 119 MVGLSLNIDVSGSELEIVYRHPTLTPSGSTKYISIPISNHYALELMFSIAVPSPDMVELF 178
           MVGLSL +D+S S++EI+YRHP LT SG+ +++  PISN   +  MFSIA+P P+MV L+
Sbjct: 1   MVGLSLGVDMSSSQIEIIYRHPNLTASGTVRFMPFPISNEQEMNTMFSIALPFPNMVHLY 60

Query: 179 VCARNIVNDTPSQCLNE----SQCLDPEPEPNVPQTDDQPNVLQTDEQPNV-PQTDDQ 232
           V    +  DT      E     + +D EPE + P    +  ++ T+E      +TDD+
Sbjct: 61  VTVSMV--DTAINLNVEPRYVEEYVDVEPESDAPPVCHEEEMVATNEYTEFRTETDDE 116

The following BLAST results are available for this feature:

BLAST of Moc05g13890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041167.1	2.3e-21	41.45	uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]	[more]
XP_022143566.1	2.9e-16	47.32	uncharacterized protein LOC111013435 [Momordica charantia]	[more]
XP_022156564.1	7.4e-12	51.16	uncharacterized protein LOC111023439 [Momordica charantia]	[more]
KAA0034014.1	2.4e-10	40.68	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	5.3e-10	39.83	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of Moc05g13890 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THR5	1.1e-21	41.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1CQN0	1.4e-16	47.32	uncharacterized protein LOC111013435 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DTV0	3.6e-12	51.16	uncharacterized protein LOC111023439 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7SS31	1.1e-10	40.68	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	2.6e-10	39.83	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of Moc05g13890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13890.1	Moc05g13890.1	mRNA