Moc05g13800 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13800
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pol protein
Location	chr5: 10591532 .. 10594450 (-)
RNA-Seq Expression	Moc05g13800
Synteny	Moc05g13800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGTTCGTGTGGTTAATGAGTTCACTGACGTGTTCCCTGAGGACCTCCCCGGCTTGCCTCCGTTTCGCGAAGTGGACTTTTGTATAGAGTTGCTGCCAGGGACGGCCCCCATCTCGAAAGCACCATATCGAATGGCTCCGGCAGAGTTGAAAGAGCTGAAGTTACAGTTAGAGGAATTACTCAACAAAGGTTTCATCCGCCCAACCGTGTCCTCTTGGGGTGCGCCCGTGCTCTATGTTAAGAAGAAAGACGGTTATATGCGACTTTGTATAGACTACAAAGAACTAAACAAAGTTACGATTAAAATAAGTATCCCCTACCACGCATTGATGACCTTTTTGATCAGCTTCAGGGAGCGAAAGTGTTCTCGAAGATAGACTTGCGTTCGGGGTACCACCAGTTAAGGTTAAAGGAGGCCGACATTCCAAGGACAGCGTTCAGAACAAGGTATGGGCACTATGAGTTTATCGTGATGTCTTTTGGACTCACAAATGCTCCGGCAGCCTTTATGGATCTAATGAATCGAGTCTTTAGGGATATTTGGATTCATTTGTTATTGTGTTTATCGATGACATCATGATTTACTCCAAGACTGAGAAGTGTCACGAGGAGCATCTCAGACAGGTTTTGACTACACTACGAGAAAATAAGTTGTATGCAAAGTTTTCAAAGTGTGAGTTCTGGCTGGACAAAGTGGCTTTCCTAGGTCACATAGTCACCAGAGATGGTATTGCAGTAGACCCCGCCAAGGTAGAGGCTATTAGCAATTGGCCAAGACCTAGTTCCGTTACAGAGATTCGTAGTTTCCTCGGCTTGGCTGGGTACTACAGGAAGTTCATCCAGAATTTCTCTCGTATAGCGGCACCGTTGACGCAGTTGACTCGTAAGAACGCTACCTTCACTTGGAGCAGCGAGTGTGAGGAGACTTTTCAAGAATTAAAGAAGCGTTTGGTGTCTGCACCGGTGTTAACCGTCCCCGATGGAACGACAGGTTTGATGGTTTACAGTGACGCCTCGCGAAAGGGCTTGGGATGTGTTCTAATGCAACACAGGAAGGTTATAGCTTATGTTTCTCGACAGCTGAAGGTGCATGAGCTTAACTACCCCACTCATGACCTAGAGCTAGCAGCGGTGGTGTTCGCCTTAAAGTTATGGAGGCACTACCTTTACGGAGAAAGAATTCAGGTCTTCACTGATCATCAGAGTTTGAAGTACCTTTTCACTCAGAAGAAGCTTAACTTAAGACAGAGACGGTGGCTAGAGTTGGTGAAGGACTATGATTGTGAGATTAGTTACCATCCGGGTAAAGCGAACGTTGTGGCCGATGCTCTTAGTAGAAAGGCGGCAAATGTGGCATCTTTAGCAGCGGCCTGCAGTCCAATGCACAGCGAGTTGGAACGCTTGGAGGTGGAGCTGACAGTGGATGATGTCTCAGCGTTGTTGGCTCGACTCTCAGTGGAACCTAGCCTGAGACAGATGATCATTGTTGCCCAAAAGGGAGATCCCAGCTTGGCCAAAGGCTTTAGTATGGTGGGCCATGGAGATTCACTCTTTCAGGTGAGGCAGCCTTGCTTTTTCGCGGAAGGTTGTGTGTGCCAAAAAATCATTCGTTGAGGAATGACTTACTGCAAGAGGCACACAATGCTCCATTCTCGGTTCATCCAGGAAGCACCAAAATGTATCAAGACCTCAAGAAAAATTATTGGTGGCATAACATGAAGAGGGAAATAGCTCAGTTTGTTAGCAAGTGTTTGACATGCCAGCAGGTAAAGCCTTCAAGTCAGCGACCTGCTGGATTTCTGCAACCTTTGAGCATACCAGTTTGGAAGTGGGACGATGTGGCTATGGACTTTATTACAGGACTACCAAGGACGGTTAAGGGATTTACTGTGATATGGGTAGTTGTAGATCGTTTGACCAAGTCTGCTCACTTTATTCCCGGCAAGGCCACGTATATAGTAGAAAAGTGGGCGGAACTGTATTTGCAGGAAATTGTCAGGCTACATGGTATATCGGTATCCATAGTGTCCGATCGCGACCCGCGTTTCACCTCGACTTTTTGGCGGAGTATACACAAGTCCCTTAGCACTAAGTTGGACTTTAGCACAGCGTTTCACCCCTAAACCCATGGTCAGACGGAGCGCGTGAACCAGGTTTTAGAGGACATGCTTAGAGCTTGCATGTTAAACTTTGGTGGTAGTTGGGACAAGTATCTCTACCTAATAGAGTTCGCTTATAAGAACATTTTTCAGGCCACGATTGGAATGGCTCCATACGAGGCACTTTATGGGAAGAAGTGTCGGTCTCCGGTTAATTGGGACGAAGTCGGAGAAAGAGTCCTCTTGGGACCGGATTTAGTACAGGTGACTAATAGTACCATTCAAAAGATCAGGGGAAGGATGCAAATTGCTCAGAGCCGTCAGAAGAGTTATGCAGACATCAGGCGTAAGGAACTCAAGTTCGTGGTAGGTGAGCGGGTGTTTCTTTGTGTGGCACCCGTGAAAGGAATTTTATGCTTTGGGAGGAAGGGGAAGCTCAGCGCAAGATTCATTGGGTTTTTTGAGATTTTGGAACGTATCGGCCCAGTCGCATATAGGCTGGCTTTGCCACCATCGTTGGCTGCGGTTCACAATGTGTTTCACGTGTCTATGCTGAGGAGGTACATTCATGACCCTTCACACGTTTTGGATCCTGAACCATTACAACTAGATGAGTCCTTGTGCTACGAAGAGGTACCTGTCAAAATTTTGGCAAGAGAAACCAAGTTGTTAAGGAACCGGACAATTCGCTTGGTTAAGGTTTTGTGGAGAAACCACCAAGTGGAAGAGGCTACTTGGGAACGGGACGATGATATCAAGGCGAGGTACCCTGAACTGCTGGAACAATCAACTTTCGGGGACGAAAGTTTTTGA

mRNA sequence

ATGGAGGCGGTTCGTGTGGTTAATGAGTTCACTGACGTGTTCCCTGAGGACCTCCCCGGCTTGCCTCCAAAGGCGGCAAATGTGGCATCTTTAGCAGCGGCCTGCAGTCCAATGCACAGCGAGTTGGAACGCTTGGAGGTGGAGCTGACAGTGGATGATGTCTCAGCGTTGTTGGCTCGACTCTCAGTGGAACCTAGCCTGAGACAGATGATCATTGTTGCCCAAAAGGGAGATCCCAGCTTGGCCAAAGGCTTTAGTATGGTGGGCCATGGAGATTCACTCTTTCAGGTACCTGTCAAAATTTTGGCAAGAGAAACCAAGTTGTTAAGGAACCGGACAATTCGCTTGGTTAAGGTTTTGTGGAGAAACCACCAAGTGGAAGAGGCTACTTGGGAACGGGACGATGATATCAAGGCGAGGTACCCTGAACTGCTGGAACAATCAACTTTCGGGGACGAAAGTTTTTGA

Coding sequence (CDS)

ATGGAGGCGGTTCGTGTGGTTAATGAGTTCACTGACGTGTTCCCTGAGGACCTCCCCGGCTTGCCTCCAAAGGCGGCAAATGTGGCATCTTTAGCAGCGGCCTGCAGTCCAATGCACAGCGAGTTGGAACGCTTGGAGGTGGAGCTGACAGTGGATGATGTCTCAGCGTTGTTGGCTCGACTCTCAGTGGAACCTAGCCTGAGACAGATGATCATTGTTGCCCAAAAGGGAGATCCCAGCTTGGCCAAAGGCTTTAGTATGGTGGGCCATGGAGATTCACTCTTTCAGGTACCTGTCAAAATTTTGGCAAGAGAAACCAAGTTGTTAAGGAACCGGACAATTCGCTTGGTTAAGGTTTTGTGGAGAAACCACCAAGTGGAAGAGGCTACTTGGGAACGGGACGATGATATCAAGGCGAGGTACCCTGAACTGCTGGAACAATCAACTTTCGGGGACGAAAGTTTTTGA

Protein sequence

MEAVRVVNEFTDVFPEDLPGLPPKAANVASLAAACSPMHSELERLEVELTVDDVSALLARLSVEPSLRQMIIVAQKGDPSLAKGFSMVGHGDSLFQVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF

Homology

[Close]

BLAST of Moc05g13800 vs. NCBI nr
Match: XP_022157851.1 (uncharacterized protein LOC111024467 [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 8.3e-28
Identity = 81/169 (47.93%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 37  PMHSELERLEVELTVDDVSALLARLSVEPSLRQMIIVAQKGDPSLAKGFSMVG------- 96
           P+  EL+R EVEL V+DV+ +LARLSVEP+LRQ II AQKGDPSL + F M G       
Sbjct: 225 PVLDELDRAEVELAVEDVAVVLARLSVEPTLRQRIIAAQKGDPSLIREFGMEGLTNRGSQ 284

Query: 97  ----------------------------HGDS---------------LFQVPVKILARET 156
                                       H  S                  VP++ILA+ET
Sbjct: 285 HSILSASLPPSLEAVHNVFHVSMLRKYVHDPSHVLDFEPLQLDETLGYRDVPIEILAKET 344

[Close]

BLAST of Moc05g13800 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 21   LPPKAANVASLAAACSPMHSELERLEVELTVDDVSALLARLSVEPSLRQMIIVAQKGDPS 80
            L  KAA+VASL AACS MHSELE  EVELTVDDVSALLARLSVEPSLRQ IIVAQK DPS
Sbjct: 986  LSRKAASVASLVAACSQMHSELECSEVELTVDDVSALLARLSVEPSLRQRIIVAQKEDPS 1045

Query: 81   LAKGFSMVGHGD 93
            LAKGFSMVGHGD
Sbjct: 1046 LAKGFSMVGHGD 1057

[Close]

BLAST of Moc05g13800 vs. NCBI nr
Match: XP_022158869.1 (uncharacterized protein LOC111025333 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 96  QVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF 155
           +VPVKILA+ETKLLRN TIRLVKVLWRNHQVEEATWER+DDIKARYPELLEQSTFGDESF
Sbjct: 71  EVPVKILAKETKLLRNLTIRLVKVLWRNHQVEEATWEREDDIKARYPELLEQSTFGDESF 130

[Close]

BLAST of Moc05g13800 vs. NCBI nr
Match: XP_022153199.1 (uncharacterized protein LOC111020755 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-22
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 96  QVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF 155
           +VPVK+LARETKLLRNRTIRLVKVLWRNHQ+EEATWER+DDIK RYPEL EQSTFGDESF
Sbjct: 111 EVPVKVLARETKLLRNRTIRLVKVLWRNHQLEEATWEREDDIKVRYPELFEQSTFGDESF 170

[Close]

BLAST of Moc05g13800 vs. NCBI nr
Match: XP_022158757.1 (uncharacterized protein LOC111025221 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 96  QVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF 155
           +VPVKI ARETKLL+NRTI LVKVLWRNHQVEEATWER+DD+KARYPELLEQSTFGDESF
Sbjct: 111 EVPVKIYARETKLLKNRTIHLVKVLWRNHQVEEATWEREDDMKARYPELLEQSTFGDESF 170

[Close]

BLAST of Moc05g13800 vs. ExPASy TrEMBL
Match: A0A6J1DZD5 (uncharacterized protein LOC111024467 OS=Momordica charantia OX=3673 GN=LOC111024467 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 81/169 (47.93%), Postives = 96/169 (56.80%), Query Frame = 0


Query: 37  PMHSELERLEVELTVDDVSALLARLSVEPSLRQMIIVAQKGDPSLAKGFSMVG------- 96
           P+  EL+R EVEL V+DV+ +LARLSVEP+LRQ II AQKGDPSL + F M G       
Sbjct: 225 PVLDELDRAEVELAVEDVAVVLARLSVEPTLRQRIIAAQKGDPSLIREFGMEGLTNRGSQ 284

Query: 97  ----------------------------HGDS---------------LFQVPVKILARET 156
                                       H  S                  VP++ILA+ET
Sbjct: 285 HSILSASLPPSLEAVHNVFHVSMLRKYVHDPSHVLDFEPLQLDETLGYRDVPIEILAKET 344

[Close]

BLAST of Moc05g13800 vs. ExPASy TrEMBL
Match: A0A6J1E0P3 (uncharacterized protein LOC111025333 OS=Momordica charantia OX=3673 GN=LOC111025333 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 56/60 (93.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 96  QVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF 155
           +VPVKILA+ETKLLRN TIRLVKVLWRNHQVEEATWER+DDIKARYPELLEQSTFGDESF
Sbjct: 71  EVPVKILAKETKLLRNLTIRLVKVLWRNHQVEEATWEREDDIKARYPELLEQSTFGDESF 130

[Close]

BLAST of Moc05g13800 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 63/72 (87.50%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 21   LPPKAANVASLAAACSPMHSELERLEVELTVDDVSALLARLSVEPSLRQMIIVAQKGDPS 80
            L  KAA+VASL AACS MHSELE  EVELTVDDVSALLARLSVEPSLRQ IIVAQK DPS
Sbjct: 986  LSRKAASVASLVAACSQMHSELECSEVELTVDDVSALLARLSVEPSLRQRIIVAQKEDPS 1045

Query: 81   LAKGFSMVGHGD 93
            LAKGFSMVGHGD
Sbjct: 1046 LAKGFSMVGHGD 1057

[Close]

BLAST of Moc05g13800 vs. ExPASy TrEMBL
Match: A0A6J1DIC9 (uncharacterized protein LOC111020755 OS=Momordica charantia OX=3673 GN=LOC111020755 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.5e-22
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 96  QVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF 155
           +VPVK+LARETKLLRNRTIRLVKVLWRNHQ+EEATWER+DDIK RYPEL EQSTFGDESF
Sbjct: 111 EVPVKVLARETKLLRNRTIRLVKVLWRNHQLEEATWEREDDIKVRYPELFEQSTFGDESF 170

[Close]

BLAST of Moc05g13800 vs. ExPASy TrEMBL
Match: A0A6J1DY18 (uncharacterized protein LOC111025221 OS=Momordica charantia OX=3673 GN=LOC111025221 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.3e-22
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 96  QVPVKILARETKLLRNRTIRLVKVLWRNHQVEEATWERDDDIKARYPELLEQSTFGDESF 155
           +VPVKI ARETKLL+NRTI LVKVLWRNHQVEEATWER+DD+KARYPELLEQSTFGDESF
Sbjct: 111 EVPVKIYARETKLLKNRTIHLVKVLWRNHQVEEATWEREDDMKARYPELLEQSTFGDESF 170

The following BLAST results are available for this feature:

BLAST of Moc05g13800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157851.1	8.3e-28	47.93	uncharacterized protein LOC111024467 [Momordica charantia]	[more]
XP_022156328.1	3.0e-22	87.50	LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]	[more]
XP_022158869.1	3.0e-22	93.33	uncharacterized protein LOC111025333 [Momordica charantia]	[more]
XP_022153199.1	5.2e-22	90.00	uncharacterized protein LOC111020755 [Momordica charantia]	[more]
XP_022158757.1	1.5e-21	90.00	uncharacterized protein LOC111025221 [Momordica charantia]	[more]

BLAST of Moc05g13800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZD5	4.0e-28	47.93	uncharacterized protein LOC111024467 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1E0P3	1.5e-22	93.33	uncharacterized protein LOC111025333 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DQB9	1.5e-22	87.50	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1	[more]
A0A6J1DIC9	2.5e-22	90.00	uncharacterized protein LOC111020755 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DY18	7.3e-22	90.00	uncharacterized protein LOC111025221 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc05g13800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..35 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13800.1	Moc05g13800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding