Moc05g13770 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13770
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Secretion protein HlyD family protein
Location	chr5: 10586549 .. 10587274 (-)
RNA-Seq Expression	Moc05g13770
Synteny	Moc05g13770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACGGAATATCCAGAGATCGGGAGCTGTTCTAGTCGTGTTTTGGATGTAGAGATAATGGACCTGACGGAGGACGAGCCCTTATCGCAACAGGCTCGATCTCCTGTTCCCCCAGCCACACCTCGACATTCTGCTCGGCTCCAAGGAACATCCATTCCTTCTTCTTCTCGTGTTCACCCCGAAGCTTCCATCCATGCGTCTGCTTTTCCTTTCTCTGGTCCATATTCTGCAAATACCGATGTGGCTGCTTACCTGGAGAGGGCCTTTAATCTTTGGCAAGGACTCTGCGAATCGTCAAGTGGATCAGACTTTGGTTATTCGAATCATCAATCTAGCATCAACACTTGTCTCAACGGAATTCATTAGGTGAGCCTTTGTAACGTATTTTTCCAATTTTGTGTAATGTTTTCACTTAATGCATGATTTTGTTCCTGGTAGGTTTTTAATCGTTTAATCGTATTTTCGGGTGGGGTCGTCGATGAGCTCAATCACCTCTGTCACCAGTATGTTTCTCGGGAGGAACTGGATTGGGCTATTGCCTCTCTAAATCAGGCCAACCGCCTTCTGGATAATGCTCGTCATGAGTTGGAAGTTGAGAAGAGGAAGTCTCGAAGTGAGCTAGTCGATCTGCAGGGGAGGCTTGATGAAGCCAACGCCCGACTTTCCAACTTTGAATTCTTGGCTGGAGAATTTAAAAAGACCCAAGAATATGTTGATCTTTAG

mRNA sequence

ATGTCGACGGAATATCCAGAGATCGGGAGCTGTTCTAGTCGTGTTTTGGATGTAGAGATAATGGACCTGACGGAGGACGAGCCCTTATCGCAACAGGCTCGATCTCCTGTTCCCCCAGCCACACCTCGACATTCTGCTCGGCTCCAAGGAACATCCATTCCTTCTTCTTCTCGTGTTCACCCCGAAGCTTCCATCCATGCGTCTGCTTTTCCTTTCTCTGGTCCATATTCTGCAAATACCGATGTTTTTAATCGTTTAATCGTATTTTCGGGTGGGGTCGTCGATGAGCTCAATCACCTCTGTCACCAGTATGTTTCTCGGGAGGAACTGGATTGGGCTATTGCCTCTCTAAATCAGGCCAACCGCCTTCTGGATAATGCTCGTCATGAGTTGGAAGTTGAGAAGAGGAAGTCTCGAAGTGAGCTAGTCGATCTGCAGGGGAGGCTTGATGAAGCCAACGCCCGACTTTCCAACTTTGAATTCTTGGCTGGAGAATTTAAAAAGACCCAAGAATATGTTGATCTTTAG

Coding sequence (CDS)

ATGTCGACGGAATATCCAGAGATCGGGAGCTGTTCTAGTCGTGTTTTGGATGTAGAGATAATGGACCTGACGGAGGACGAGCCCTTATCGCAACAGGCTCGATCTCCTGTTCCCCCAGCCACACCTCGACATTCTGCTCGGCTCCAAGGAACATCCATTCCTTCTTCTTCTCGTGTTCACCCCGAAGCTTCCATCCATGCGTCTGCTTTTCCTTTCTCTGGTCCATATTCTGCAAATACCGATGTTTTTAATCGTTTAATCGTATTTTCGGGTGGGGTCGTCGATGAGCTCAATCACCTCTGTCACCAGTATGTTTCTCGGGAGGAACTGGATTGGGCTATTGCCTCTCTAAATCAGGCCAACCGCCTTCTGGATAATGCTCGTCATGAGTTGGAAGTTGAGAAGAGGAAGTCTCGAAGTGAGCTAGTCGATCTGCAGGGGAGGCTTGATGAAGCCAACGCCCGACTTTCCAACTTTGAATTCTTGGCTGGAGAATTTAAAAAGACCCAAGAATATGTTGATCTTTAG

Protein sequence

MSTEYPEIGSCSSRVLDVEIMDLTEDEPLSQQARSPVPPATPRHSARLQGTSIPSSSRVHPEASIHASAFPFSGPYSANTDVFNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSELVDLQGRLDEANARLSNFEFLAGEFKKTQEYVDL

Homology

[Close]

BLAST of Moc05g13770 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 5.7e-25
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 82   VFNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSE 141
            +FNRL+VFSG V DE+NHL   Y  RE+L+ AI+SLNQAN LL+  + +LE+EKRKSR E
Sbjct: 1115 IFNRLVVFSGWVADEINHLRCHYTPREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDE 1174

Query: 142  LVDLQGRLDEANARLSNFEFLAGEFKKTQEYVDL 176
            L +LQ RLDE NARL N EFLA EFKKTQEYVDL
Sbjct: 1175 LANLQRRLDEVNARLFNSEFLAREFKKTQEYVDL 1208

[Close]

BLAST of Moc05g13770 vs. NCBI nr
Match: XP_022147193.1 (uncharacterized protein LOC111016203 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 8.5e-21
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 82  VFNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSE 141
           VFN  +VFSG V DE+NHL   +  R+ELD  +ASL+QAN LL N RH+LEV K KS  +
Sbjct: 101 VFNPSVVFSGRVTDEINHLRSHHARRDELDQTLASLDQANMLLANVRHDLEVGKGKSGDD 160

Query: 142 LVDLQGRLDEANARLSNFEFLAGEFKKTQEYVDL 176
           L  LQ +L+EAN RLSN +FLA EFKKTQ+YVDL
Sbjct: 161 LAALQRKLNEANDRLSNSKFLAAEFKKTQDYVDL 194

[Close]

BLAST of Moc05g13770 vs. NCBI nr
Match: XP_022150031.1 (uncharacterized protein LOC111018304 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-17
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 86  LIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSELVDL 145
           ++V S  V D++NHL   Y    ELD A+ASLNQAN +L N +H+LEVE+R+SR +LV L
Sbjct: 93  ILVISIRVADKINHLRRHYTPPNELDQALASLNQANSMLANTQHDLEVERRRSRDDLVVL 152

Query: 146 QGRLDEANARLSNFEFLAGEFKKTQ 171
           Q +LDEANA+LSN EFLA +FKKTQ
Sbjct: 153 QKKLDEANAQLSNSEFLAEKFKKTQ 177

[Close]

BLAST of Moc05g13770 vs. NCBI nr
Match: TYK01274.1 (Secretion protein HlyD family protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-04
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 83  FNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSEL 142
           F R  +  G + DELNHL   YV REE       L +ANR L+ A+ EL + +  S+ ++
Sbjct: 159 FTRFSISFGRMGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKI 218

Query: 143 VDLQGRLDEANARLSNFEFLAGEFKKTQEYV 174
             L+ +L EA ++LS+ + LA +F KT+E+V
Sbjct: 219 DKLKAQLAEAKSQLSDAKCLAEKFSKTEEFV 242

[Close]

BLAST of Moc05g13770 vs. NCBI nr
Match: XP_031737089.1 (uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-04
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 83  FNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSEL 142
           F R  +  G + DELNHL   YV REE       L +ANR L+ A+ EL + +  S+ ++
Sbjct: 198 FTRFSISFGRMGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKI 257

Query: 143 VDLQGRLDEANARLSNFEFLAGEFKKTQEYV 174
             L+ +L EA + LS+ + LA +F KT+E+V
Sbjct: 258 DKLKAQLTEAKSELSDAKCLAEKFSKTEEFV 281

[Close]

BLAST of Moc05g13770 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.7e-25
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 82   VFNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSE 141
            +FNRL+VFSG V DE+NHL   Y  RE+L+ AI+SLNQAN LL+  + +LE+EKRKSR E
Sbjct: 1115 IFNRLVVFSGWVADEINHLRCHYTPREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDE 1174

Query: 142  LVDLQGRLDEANARLSNFEFLAGEFKKTQEYVDL 176
            L +LQ RLDE NARL N EFLA EFKKTQEYVDL
Sbjct: 1175 LANLQRRLDEVNARLFNSEFLAREFKKTQEYVDL 1208

[Close]

BLAST of Moc05g13770 vs. ExPASy TrEMBL
Match: A0A6J1D0L6 (uncharacterized protein LOC111016203 OS=Momordica charantia OX=3673 GN=LOC111016203 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-21
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 82  VFNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSE 141
           VFN  +VFSG V DE+NHL   +  R+ELD  +ASL+QAN LL N RH+LEV K KS  +
Sbjct: 101 VFNPSVVFSGRVTDEINHLRSHHARRDELDQTLASLDQANMLLANVRHDLEVGKGKSGDD 160

Query: 142 LVDLQGRLDEANARLSNFEFLAGEFKKTQEYVDL 176
           L  LQ +L+EAN RLSN +FLA EFKKTQ+YVDL
Sbjct: 161 LAALQRKLNEANDRLSNSKFLAAEFKKTQDYVDL 194

[Close]

BLAST of Moc05g13770 vs. ExPASy TrEMBL
Match: A0A6J1DA80 (uncharacterized protein LOC111018304 OS=Momordica charantia OX=3673 GN=LOC111018304 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-17
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 86  LIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSELVDL 145
           ++V S  V D++NHL   Y    ELD A+ASLNQAN +L N +H+LEVE+R+SR +LV L
Sbjct: 93  ILVISIRVADKINHLRRHYTPPNELDQALASLNQANSMLANTQHDLEVERRRSRDDLVVL 152

Query: 146 QGRLDEANARLSNFEFLAGEFKKTQ 171
           Q +LDEANA+LSN EFLA +FKKTQ
Sbjct: 153 QKKLDEANAQLSNSEFLAEKFKKTQ 177

[Close]

BLAST of Moc05g13770 vs. ExPASy TrEMBL
Match: A0A5A7SSF9 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43059G00750 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 83  FNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSEL 142
           F R  +  G + DELNHL   YV REE       L +ANR L+ A+ EL + +  S+ ++
Sbjct: 210 FTRFSISFGRMGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKI 269

Query: 143 VDLQGRLDEANARLSNFEFLAGEFKKTQEYV 174
             L+ +L EA ++LS+ + LA +F KT+E+V
Sbjct: 270 DKLKAQLAEAKSQLSDAKCLAEKFSKTEEFV 293

[Close]

BLAST of Moc05g13770 vs. ExPASy TrEMBL
Match: A0A5D3BQ22 (Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00610 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 83  FNRLIVFSGGVVDELNHLCHQYVSREELDWAIASLNQANRLLDNARHELEVEKRKSRSEL 142
           F R  +  G + DELNHL   YV REE       L +ANR L+ A+ EL + +  S+ ++
Sbjct: 159 FTRFSISFGRMGDELNHLYLNYVPREE-------LMRANRRLEEAKVELGLCQASSQVKI 218

Query: 143 VDLQGRLDEANARLSNFEFLAGEFKKTQEYV 174
             L+ +L EA ++LS+ + LA +F KT+E+V
Sbjct: 219 DKLKAQLAEAKSQLSDAKCLAEKFSKTEEFV 242

The following BLAST results are available for this feature:

BLAST of Moc05g13770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156747.1	5.7e-25	68.09	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
XP_022147193.1	8.5e-21	61.70	uncharacterized protein LOC111016203 [Momordica charantia]	[more]
XP_022150031.1	4.3e-17	60.00	uncharacterized protein LOC111018304 [Momordica charantia]	[more]
TYK01274.1	4.2e-04	39.56	Secretion protein HlyD family protein [Cucumis melo var. makuwa]	[more]
XP_031737089.1	4.2e-04	39.56	uncharacterized protein LOC105435920 isoform X5 [Cucumis sativus]	[more]

BLAST of Moc05g13770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSS1	2.7e-25	68.09	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D0L6	4.1e-21	61.70	uncharacterized protein LOC111016203 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DA80	2.1e-17	60.00	uncharacterized protein LOC111018304 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5A7SSF9	2.0e-04	39.56	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BQ22	2.0e-04	39.56	Secretion protein HlyD family protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of Moc05g13770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13770.1	Moc05g13770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding