Moc05g13560 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13560
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5: 10441125 .. 10445703 (-)
RNA-Seq Expression	Moc05g13560
Synteny	Moc05g13560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATTTCATGGCTTATGAATATAATCGATCCTAAGGTACGTTCTATGCTATCCAATTATAATGATGTCAAGCTATAGTGGGATGATTTGAATGAACAATTCTTGGTTGTTAATGGTCCTCGTATTTACCAACTTAAAGGAGAAATTAGTCATTGTGCATAAAACAAAAATATGCCTATTTCTGTCTACTTTAGTAAACTGAATGTCTTGTGGGATGAGTTAGATAAACATGAGCCTCTAATTTCTTGCGAGTGTGGAAAGTGTACTTGTCAGATTGTAAAGCTACATGAAAAACGACGTTCTTATGATAGACTTAATCAATTTTTACTCATTTGTGTTCTGATTATTATGTCAGTTGAGAACTACTATTTTGTCACAAGAGCCTCTTCCATCCTTGAATCAAGCATTTCAACAAGTGGTTCAAGATGAGCGGGTTAGAGGGATTACTCGAACCAGATTGAACAACGATGAGAAACCTGAGGTAGTTGGTTTTGATGTGTGTACAGATAATAGACAAAAGTCATGCTTGGATCGAGCTAAAAAGGCGATTTTGACCTATACTCATTGTCACAAATCAGGACATTCTAGTAGTACATGTTTTATTTTACATGGCACGCCAGATTGGTACTTGAAGAAGTATGGGTCCTCCTCCGATGGCAAGGGAAATTTGAAGGTAAACCAACACTCCATAAAACTTCGAACAACCATGGGCGTTCCATAGCGCATGCAAATGTTGTTGCCACTAACATCCCTCATGGTACATCACCTATTGCATCGAGCCCTCTTCCAAACGGTTGCACATTAAGTATAACATGACTGATTGGATTATTGATACTGGATGTTCTCATCATGTTACCGAATCATGTCAATTGGATATTCACGTGGTTTCATCTTGCCATGTGGGTCTCCCAGATGGACAAACTGTAGTTGCTACTAAAGCTTGGATTGTGAAACTGACAGACTCTATCATACTTGATAATGTTCTCTTTGTCTCTCAATTACAGTGCAATTTAATCTCTGTTTCACAATTGAGTGACAAGCTTAGCTGCTTTGTTCAATTTTATTCTAACTTGTGTGCTATACATGACCAACGTTCAAGGCATGCGATTGGTACAAGTGAGAGAAGAGATGGACTTTATTATTGATGCCAAAGTTTACCAGTGCAAGCCGTTTCAGTTTCCAGTTTGAACTCTTTGGAGTTGTGGCATCATCGATTAGGTGATCCTTCCGAGATCAGCGTAGTGAAGTTGCTTCCTTTTCTTTCCAATTCTAGGGGTCAGTTGGATAAAGGGTGTGAAGTCTATCATCGGCTAAACATTGTCGTAGTATTTTTCCTTTGAGTCAAAATAAATCCACTCGAATATTTGAGTTACTTCATTGTGATTTATGGGGACCGTACAATAAACTTTCTTCTTGTGGTGCATGTTATTTTTTAACTCTTGTTGATGATTATTCTAGAGCTGTATGGGTTTATCTAATGATTGATAAAGGAGAAGTTTTTTCGATGTTTATGTCATTTATTGCAATGATTGACCGTCAATTTTCTTAAAAGGTGAAAATTGTTCGTAGTGATAATGGAACGAAATTTAACTGCCTGAAAAATTATTTTGCACATAGTGGAATTGTTTTTCAGACCTTGTATGTAGGTACACCTCAATAGAATGGTCGCGTTAAATGAAAACACCGACATATTTTGAATGTTTCTTGTGCCTTACATTTTCAGAAAGGATTATCGATATATTTATGGGGTGAATGTGTTTTGGCCTCTGCTCATCTCATCAATAGGACTCCATCTAGTGTACTTTCAAACAAAACTCCGTATGAGATTTTATTTGATTGTTCTCCTTCTTTCAACAACTTACGTATCATTGGATGTTTAGCTTTTGCTCATAACCAAAACACTAAAGGTGACAAGTTTGCTAGTCGTAGTTGCAAATGTGTTTTTGTTAGTTATCCGTTTAGCAAAAAGGGTTGGAGTTTATTTGATATTGAAAAAGAAACAATTCTTTGTATCACAGGATGTCAGGTTTTATGAAAATGTTTTTTCTTTCTTGACTACTCTAAAGTCTTGTATTGATACTCCTGCAAACAGTAATGATTTTTCTCAAGTGGTTTTTGAGGATATGGGGACTGAATAGATATTGTGTGAGGCCAGCACTGATTCTCCATCAGCCTCTGCCACTTCCTCCATGACCGGCGAGAAGGTTGGTGCAGAATATGTCGGCGTGGGTGTTGGTGGTGAGGAACATGTTGACGAAAGGGTTGGTGAGGAGCAACTGGGTCGTGGATGTAGAAAGAAAGTACCATCAATTAAATTGTGAGATTACATGATACATACAGTTACTCAGAAAAGTCTATCTCTTCCTCCATATGTTTAACGTCATCATCCTTCCTCAGGTAACCTCTTTCCTTATGGTACATTATGTTAGTTGTGACAGTTTACTACACCACATCGAGATTTTCTTGCAGCTATAACTACAAGTGTTGAACCACGATCCTTTAGAGAAGTTGTAACGAATGCTAAATGGTGTTGTGCTATGCAGCAAGAAATTAATGCTTTGTAAGACAATGACACTTGGACTATGGAGAAATTACATTAAAGAAAGAAAGCACTCGGTAGTAAATAGGTGTACAAATCTATGTAAAATTCTGATGGTAGTAAATAGAAACACCTTTCAGTTATTTATAATGAACGCATTACAAGAGATTAAGGGAGGATTATGGACCTTTCAGAGCTCTCCTAAATAGTTGTAGATAAAATAGTCAAAAGATATCCCTCTACCTCACTACCCAAAGTGTATATATTTGAGCAAATAACTCACACTACCACTTTCAATTGTATAGTATTCCCTTATTTCTAACGATTTTCTTCCCTTTTTTCTGGTCATACTAGCATGTCCCCTCTTCCAAGAGTAAATGTTATTCACCTTAGGCCTATCAATTTTCTTTGCATATACTACTAAAATAAATCAAATCATGTGAATGTGAGCATAATTCATGGATAAGAATTTGCTTGAGTTTAGATGTTCAAATCTTCGTACGTAATAAGAGAATCTAAATTGTCACAATGTCATCCCAACGCGGAGTGGCCGAAGTCATCCTCTGAAGTGTCTCTTTCGAGATAAGCGTTTGAAGTCAATTGAATGTAGGGAATGTGTGATTGGTGTGATTGAGTGTGATTGGTCACCTAAAAAAAATGGTCTGCGAAAAATAGATTTTTGGGTCGGGAGTCAATTGAGTGTAGGGAATGTGTTAACACCCTACGACACCCGTTTTAAAAACGATTACCAAATTTTGTCTTAAATTATCCTATTATATTTTATTGGTCCAAAAAAGAAAAAAATGTTTTTCTTTTATTTTAAATGTCTCATGTTATTAGTTCACGTTTTAATACTAAAACATGAATTAAAGGTATGAGTGGCACGAGGGCCATGAAGAAAACTTAATCACCTCGAGAATATTGGAAGGCTCCAATCTCCGTCATTGGAGTTTTCGAAACAATTATTAATTTTTTAAAATGATAAGTAAAAGAAATTATTTTAGGGCATATTGGGACTCAAAATTGAGGCACAGGTGTTAACACTCACGCTTTTTACCACTGTAACAGAACCTTAAGATGTAAAACTTTTAATTTATTTTTTAAAACTTAAAAAAACTTACAAAATTTTTTAAATTGAAACAAAAAAATAACTTTTTATTTATTTTGAAATTAAAGAGATTCTTTAAAAGAAAAACTTTTATTTCTTAATTTAAAAAAATTTACTTAAAACAAATGTTATTCTTTTTTCCAAAAATATAATTATCAAACTTGTTTAAAACATATTCCATTCCCCTTTTACAACAACTTATGTTTTTATGCCTTTGTAAATTCGAAATTTTAACAAGATAATATTTTATTCTAAAACAACTTTCTAAAAGAGATTTTCTTTAAATCCTCTCTTTTTGTCTCCTCTTTTTTTAAAAACCTACAGTAGAAGACTCTTTTTAAAAAAATAAAAATAAAAATAAAACTGATTAGAAAGACGCAAAACAAAAAAGAGTAAATCTTATTAGAAAGTAAAAAAAAAAAAAAACTCAACTATTAAACTTTAAATTGAAATTTAAAAGAATCAAATTTATTTTTAAGTCTTATTCTTTTTTTCAACTTATTTTAACCAAAATTTTTAAAGCAAAATCTTTTATTTAAACGAAATTAACTTTTTTTTTTACTTCATTTAAAAAACTCGTTTTATTTTATTTAAAAAAATTATTGTGAAATCATTTACATTATTTTCCAAAACTTAGTTTGAAAATGTTTATTTTCTTTTCACAAAAGAAACTTTTTGTTATTATTAAAAGAATGGTATACTGTTTTTGCACAGAGATTTCTACCGTCGACCTTTTGCTTGAAATTGATGTCATTCGTGTCACCGAATCTACTACACCGGAGCTCGTGGGTGTCAAAGTGGGTCACCGATCTCACTCGTGCAGCTGTTGTACTGTCGCTTGTCGTCTGTCTGCTGATGTCAGATGGTCGTTGGAATATTGTCAGATCTGCTCGTTGATGGACCTGACATTTAAAAAAAATCTTCTTTGA

mRNA sequence

ATGTTCATTTCATGGCTTATGAATATAATCGATCCTAAGTTGAGAACTACTATTTTGTCACAAGAGCCTCTTCCATCCTTGAATCAAGCATTTCAACAAGTGGTTCAAGATGAGCGGGTTAGAGGGATTACTCGAACCAGATTGAACAACGATGAGAAACCTGAGGTAGTTGGTTTTGATGTGTGTACAGATAATAGACAAAAGTCATGCTTGGATCGAGCTAAAAAGGCGATTTTGACCTATACTCATTGTCACAAATCAGGACATTCTAGTAGTACATGTTTTATTTTACATGGCACGCCAGATTGGTACTTGAAGAAGTATGGGTCCTCCTCCGATGGCAAGGGAAATTTGAAGATATTGTGTGAGGCCAGCACTGATTCTCCATCAGCCTCTGCCACTTCCTCCATGACCGGCGAGAAGGTTGGTGCAGAATATGTCGGCGTGGGTGTTGGTGGTGAGGAACATGTTGACGAAAGGGTTGAGATTTCTACCGTCGACCTTTTGCTTGAAATTGATGTCATTCGTGTCACCGAATCTACTACACCGGAGCTCGTGGGTGTCAAAGTGGGTCACCGATCTCACTCGTGCAGCTGTTGTACTGTCGCTTGTCGTCTGTCTGCTGATGTCAGATGGTCGTTGGAATATTGTCAGATCTGCTCGTTGATGGACCTGACATTTAAAAAAAATCTTCTTTGA

Coding sequence (CDS)

ATGTTCATTTCATGGCTTATGAATATAATCGATCCTAAGTTGAGAACTACTATTTTGTCACAAGAGCCTCTTCCATCCTTGAATCAAGCATTTCAACAAGTGGTTCAAGATGAGCGGGTTAGAGGGATTACTCGAACCAGATTGAACAACGATGAGAAACCTGAGGTAGTTGGTTTTGATGTGTGTACAGATAATAGACAAAAGTCATGCTTGGATCGAGCTAAAAAGGCGATTTTGACCTATACTCATTGTCACAAATCAGGACATTCTAGTAGTACATGTTTTATTTTACATGGCACGCCAGATTGGTACTTGAAGAAGTATGGGTCCTCCTCCGATGGCAAGGGAAATTTGAAGATATTGTGTGAGGCCAGCACTGATTCTCCATCAGCCTCTGCCACTTCCTCCATGACCGGCGAGAAGGTTGGTGCAGAATATGTCGGCGTGGGTGTTGGTGGTGAGGAACATGTTGACGAAAGGGTTGAGATTTCTACCGTCGACCTTTTGCTTGAAATTGATGTCATTCGTGTCACCGAATCTACTACACCGGAGCTCGTGGGTGTCAAAGTGGGTCACCGATCTCACTCGTGCAGCTGTTGTACTGTCGCTTGTCGTCTGTCTGCTGATGTCAGATGGTCGTTGGAATATTGTCAGATCTGCTCGTTGATGGACCTGACATTTAAAAAAAATCTTCTTTGA

Protein sequence

MFISWLMNIIDPKLRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLDRAKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSDGKGNLKILCEASTDSPSASATSSMTGEKVGAEYVGVGVGGEEHVDERVEISTVDLLLEIDVIRVTESTTPELVGVKVGHRSHSCSCCTVACRLSADVRWSLEYCQICSLMDLTFKKNLL

Homology

[Close]

BLAST of Moc05g13560 vs. NCBI nr
Match: XP_021717245.1 (uncharacterized protein LOC110685089 [Chenopodium quinoa])

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-23
Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 2   FISWLMNIIDPKLRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDV 61
           F+  L +     LR+T+LSQ+PLPSLN+A+Q + Q+ERVRGI     + +E PE V F V
Sbjct: 190 FLLGLNSYFYAALRSTLLSQDPLPSLNRAYQTIAQEERVRGIAS---HKEEPPEAVSFAV 249

Query: 62  CTDNRQKSCLDRAKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSD----GKGN 121
             +N  K  L RA++A L  THCHK GH ++TCF  HG P WY++KYGS  +    G+G 
Sbjct: 250 RMENNSKPRLSRAERAALECTHCHKKGHDATTCFDKHGVPSWYIEKYGSKENNRGAGRGR 309

Query: 122 LKILCEASTDSPSASATSSMT 139
              L   +T +P+A++T+  T
Sbjct: 310 GAPLKANATPAPAAASTAPAT 327

[Close]

BLAST of Moc05g13560 vs. NCBI nr
Match: XP_021757931.1 (uncharacterized protein LOC110722967 [Chenopodium quinoa])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-22
Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 0


Query: 14  LRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLDR 73
           LR+T+LSQ+PLPSLN+AFQ + Q+ERVRGI   +   +E PEV GF V  +N  K  L R
Sbjct: 115 LRSTLLSQDPLPSLNRAFQTIAQEERVRGIAHIK---EETPEVAGFAVRMENNSKPRLSR 174

Query: 74  AKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSDGKG-----------NLKILC 133
           A++A L   HCHK GH ++TCF  HG P WY++KYGS  D +G           N     
Sbjct: 175 AERAALVCQHCHKKGHDATTCFDKHGVPSWYVEKYGSKDDSRGAGRGRGAPVKANATPTA 234

Query: 134 EASTDSPSASATS--SMTGEKVGAEYVGVGVGGEEHVDERV 162
                + SASAT+   +T EK  A  V   +G   H   RV
Sbjct: 235 APPPQNNSASATTMPHLTPEKWQA--VMAVMGNSPHPSHRV 270

[Close]

BLAST of Moc05g13560 vs. NCBI nr
Match: XP_021756883.1 (uncharacterized protein LOC110721955 [Chenopodium quinoa])

HSP 1 Score: 112.5 bits (280), Expect = 5.0e-21
Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 14  LRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLDR 73
           LR+T+LSQ+PLPSLN+AFQ + Q+ERVRGI     + +E PEVVGF    +N+ K  L R
Sbjct: 202 LRSTLLSQDPLPSLNRAFQTIAQEERVRGIAN---HKEEPPEVVGFAARMENKPKPRLSR 261

Query: 74  AKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSDGK 116
           A+KA L  T+C + GH +STCF  HG P+WY ++YG     K
Sbjct: 262 AEKAALVCTYCQQKGHDASTCFARHGVPEWYTERYGLKEPNK 300

[Close]

BLAST of Moc05g13560 vs. NCBI nr
Match: XP_021746757.1 (uncharacterized protein LOC110712595 [Chenopodium quinoa])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-20
Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 14  LRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLDR 73
           LR+T+LSQ+PLP+LN+AFQ + Q++RVRGI   +   +E PEV GF V  +   K  L R
Sbjct: 203 LRSTLLSQDPLPTLNRAFQTIAQEKRVRGIANIK---EEPPEVAGFAVRMEPNTKPRLSR 262

Query: 74  AKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSDGKG-------NLKILCEAST 133
           A++A L  T+C+K  H S+TCF  HG P WY++KYGS  + KG        +K     ++
Sbjct: 263 AERAALVCTYCNKKSHDSTTCFDKHGVPAWYIEKYGSKDENKGAGHGRSAPVKANATPAS 322

Query: 134 DSPSASATSSMTGEK 142
             P+A++ + +T E+
Sbjct: 323 HPPAAASAAHLTPEQ 334

[Close]

BLAST of Moc05g13560 vs. NCBI nr
Match: RWR90768.1 (copia protein gag-int-pol protein [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 99.4 bits (246), Expect = 4.4e-17
Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 13  KLRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLD 72
           +LRTT+LSQEPLPSL++A+QQ+ Q+ERVRGIT  R   +  PEVVGF V  + R ++  D
Sbjct: 62  QLRTTLLSQEPLPSLDRAYQQITQEERVRGITHAR---ESLPEVVGFAVRPEGRGRAKPD 121

Query: 73  RAKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSDGKGNLKILCEASTDSPSAS 132
           +  K+ L  +HCH+SGH   TCF L G P+W+  +  +        K      TDSP+  
Sbjct: 122 KIDKSGLMCSHCHRSGHDIVTCFQLLGYPEWWGDRPRTQGATHARGKGGGGRGTDSPATG 181

Query: 133 ATSSMTGEKVGAE----YVGVGVGGEEH 157
                T   V  +     VG  V G+ +
Sbjct: 182 RGKGATVRAVAVDGCNTMVGASVNGQRN 206

[Close]

BLAST of Moc05g13560 vs. ExPASy TrEMBL
Match: A0A443PJ17 (Copia protein gag-int-pol protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01988000 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 60/148 (40.54%), Postives = 83/148 (56.08%), Query Frame = 0


Query: 13  KLRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLD 72
           +LRTT+LSQEPLPSL++A+QQ+ Q+ERVRGIT  R   +  PEVVGF V  + R ++  D
Sbjct: 62  QLRTTLLSQEPLPSLDRAYQQITQEERVRGITHAR---ESLPEVVGFAVRPEGRGRAKPD 121

Query: 73  RAKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSSSDGKGNLKILCEASTDSPSAS 132
           +  K+ L  +HCH+SGH   TCF L G P+W+  +  +        K      TDSP+  
Sbjct: 122 KIDKSGLMCSHCHRSGHDIVTCFQLLGYPEWWGDRPRTQGATHARGKGGGGRGTDSPATG 181

Query: 133 ATSSMTGEKVGAE----YVGVGVGGEEH 157
                T   V  +     VG  V G+ +
Sbjct: 182 RGKGATVRAVAVDGCNTMVGASVNGQRN 206

[Close]

BLAST of Moc05g13560 vs. ExPASy TrEMBL
Match: A0A803M8C9 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-12
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 52  EKPEVVGFDVCTDNRQKSCLDRAKKAILTYTHCHKSGHSSSTCFILHGTPDWYLKKYGSS 111
           E+PEV  F V  ++R K  L RA++A LT THC K+GH SSTCF LHGTP WY++KYG+S
Sbjct: 149 ERPEVASFAVRMESRPKPRLSRAERAALTCTHCQKTGHDSSTCFDLHGTPTWYVEKYGTS 208

Query: 112 S 113
           S
Sbjct: 209 S 209

[Close]

BLAST of Moc05g13560 vs. ExPASy TrEMBL
Match: A0A6D2L4Z0 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS46791 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-11
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 13  KLRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKSCLD 72
           +LR+TI  ++PLPSLNQ +   +++E+   I R   N   KP+ +GFD   D+  +    
Sbjct: 170 QLRSTITGEDPLPSLNQVYSCTIREEQNLNIARA--NETPKPDAIGFDAKGDSSARVAAV 229

Query: 73  RAK----KAILTYTHCHKSGHSSSTCFILHGTPDWYLK-KYGSSSDGKGNLK 120
                  ++ LT THC++ GH  S CF LHG PDWY +   GS+   + + K
Sbjct: 230 SGSRFRDRSTLTCTHCNRQGHEVSKCFNLHGYPDWYYELNKGSTQPSRSDPK 279

[Close]

BLAST of Moc05g13560 vs. ExPASy TrEMBL
Match: A0A396JN27 (Putative gag-polypeptide of LTR copia-type OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr1g0179951 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 14  LRTTILSQEPLPSLNQAFQQVVQDERVR-GITRTRLNNDEKPEVVGFDVCTDNRQKSCL- 73
           +R+ +LSQ+PLP+++QA+Q+V+QDER+R G    + N D    V+ F V  D R KS L 
Sbjct: 210 IRSNLLSQDPLPNIDQAYQRVIQDERLRQGEYSIQQNRD---NVMAFKVAPDTRGKSKLV 269

Query: 74  DRAKKAILTYTHCHKSGHSSSTCFILHGTPDWY-LKKYGSSSDGKG 117
           D + K     THC++ GH   TCF +HG P+W+  +  G    G+G
Sbjct: 270 DNSDKFC---THCNREGHDERTCFQIHGFPEWWGDRPRGGRGSGRG 309

[Close]

BLAST of Moc05g13560 vs. ExPASy TrEMBL
Match: A0A3S3MSJ0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01799700 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 41/105 (39.05%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 14  LRTTILSQEPLPSLNQAFQQVVQDERVRGITRTRLNNDEKPEVVGFDVCTDNRQKS-CLD 73
           +RT +L QEPLP+L++A+QQV+Q ER+RG      + +E+  ++ F +  D R KS  +D
Sbjct: 197 IRTNLLGQEPLPTLDRAYQQVIQAERLRG-GELSSSKEERDSIMAFTIQPDTRGKSRFVD 256

Query: 74  RAKKAILTYTHCHKSGHSSSTCFILHGTPDWY-LKKYGSSSDGKG 117
              K      HC++ GH  S+CF LHG P+W+  +  G    G+G
Sbjct: 257 NTDKFC---NHCNREGHDESSCFQLHGFPEWWGDRPRGGRGPGRG 297

The following BLAST results are available for this feature:

BLAST of Moc05g13560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_021717245.1	2.4e-23	44.68	uncharacterized protein LOC110685089 [Chenopodium quinoa]	[more]
XP_021757931.1	1.2e-22	44.10	uncharacterized protein LOC110722967 [Chenopodium quinoa]	[more]
XP_021756883.1	5.0e-21	51.96	uncharacterized protein LOC110721955 [Chenopodium quinoa]	[more]
XP_021746757.1	1.9e-20	42.22	uncharacterized protein LOC110712595 [Chenopodium quinoa]	[more]
RWR90768.1	4.4e-17	40.54	copia protein gag-int-pol protein [Cinnamomum micranthum f. kanehirae]	[more]

BLAST of Moc05g13560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g13560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A443PJ17	2.1e-17	40.54	Copia protein gag-int-pol protein OS=Cinnamomum micranthum f. kanehirae OX=33745...	[more]
A0A803M8C9	1.6e-12	60.66	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A6D2L4Z0	6.7e-11	36.61	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS46791 ...	[more]
A0A396JN27	1.1e-10	41.51	Putative gag-polypeptide of LTR copia-type OS=Medicago truncatula OX=3880 GN=Mtr...	[more]
A0A3S3MSJ0	1.5e-10	39.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X1 OS=Cinnam...	[more]

BLAST of Moc05g13560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 13..146
None	No IPR available	PANTHER	PTHR34222:SF28	SUBFAMILY NOT NAMED	coord: 13..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13560.1	Moc05g13560.1	mRNA