Moc05g13150 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g13150
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Pentatricopeptide repeat-containing protein
Location	chr5: 10101119 .. 10101959 (-)
RNA-Seq Expression	Moc05g13150
Synteny	Moc05g13150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAAAAAGTAGTCGAGGTGCTTGATGAAATGACAAGGTATGGGTGCGAACTTGATGAATACGTATTTAGGTGTCTTCTTGATGCTCTGTGCAAGAATGGTAGTGTTAAAGAAGCAGCTTCGCTATTTGAGGATATGAGAATTCGGTTTAATCCAAATCTAAAACATTTCACTTCATTGTTGTATGGTTGGTGCAGAGAAGGCAAGATTTTGGAGGCGAAGCACGTGTTGGTGCAGATAAAGGAAGTAGGTTTTGAGCCTGATATTGTGGTTTACAATAATTTACTTGGTGAGTATGCTCAAGCAGGGAAAATGCGGGATGCTTTTCATCTTTTGGAGGAGATGAGGAGAGTGAATTGTGGGTCAAATGTCGCTTCTTATACAATTTTGATTCAGGCTTTTTGTAAATCGGAAAAGATGGATGAATTTGTTGGATCAGTATGGCAACCCTAGAGGGGGAATAAGGTTTAATTAACAAAATATAAACTTTTTAATAAATGGGCTTAGTTTAAACAAAAATAATATACTTTTTGAAATATGCAATTTTAGCAAAGTAAGATAAAATAAATTCTGAGGCAAACAAGAGAAATTTAAAACAAACAATAAAATTCTAACATTAATTGCAAAAATAAATAAGGGAGAGGGTTAGAGAAATTTGACACCGGGAATTTTTATAATGGTTCGGCACAACTATCCTACTCCACCGCCCAAGCACCTCTTGGGTTGTAAATTGAAATTCTGACTCTTTCCACGGTACGAGTCAAACCGGTACACTGCTCTTCACAAGAGCAAAGACGATCCTCTCCATCGTGAGGATCACACCGTTACAATGAGTTGA

mRNA sequence

ATGGTCAAAAAAGTAGTCGAGGTGCTTGATGAAATGACAAGGTATGGGTGCGAACTTGATGAATACGTATTTAGGTGTCTTCTTGATGCTCTGTGCAAGAATGGTAGTGTTAAAGAAGCAGCTTCGCTATTTGAGGATATGAGAATTCGGTTTAATCCAAATCTAAAACATTTCACTTCATTGTTGTATGGTTGGTGCAGAGAAGGCAAGATTTTGGAGGCGAAGCACGTGTTGGTGCAGATAAAGGAAGTAGGTTTTGAGCCTGATATTGTGGTTTACAATAATTTACTTGGTGAGTATGCTCAAGCAGGGAAAATGCGGGATGCTTTTCATCTTTTGGAGGAGATGAGGAGAGTGAATTGTGGGTCAAATGTCGCTTCTTATACAATTTTGATTCAGGCTTTTTGTAAATCGGAAAAGATGGATGAATTTGTTGGATCATCAAACCGGTACACTGCTCTTCACAAGAGCAAAGACGATCCTCTCCATCGTGAGGATCACACCGTTACAATGAGTTGA

Coding sequence (CDS)

ATGGTCAAAAAAGTAGTCGAGGTGCTTGATGAAATGACAAGGTATGGGTGCGAACTTGATGAATACGTATTTAGGTGTCTTCTTGATGCTCTGTGCAAGAATGGTAGTGTTAAAGAAGCAGCTTCGCTATTTGAGGATATGAGAATTCGGTTTAATCCAAATCTAAAACATTTCACTTCATTGTTGTATGGTTGGTGCAGAGAAGGCAAGATTTTGGAGGCGAAGCACGTGTTGGTGCAGATAAAGGAAGTAGGTTTTGAGCCTGATATTGTGGTTTACAATAATTTACTTGGTGAGTATGCTCAAGCAGGGAAAATGCGGGATGCTTTTCATCTTTTGGAGGAGATGAGGAGAGTGAATTGTGGGTCAAATGTCGCTTCTTATACAATTTTGATTCAGGCTTTTTGTAAATCGGAAAAGATGGATGAATTTGTTGGATCATCAAACCGGTACACTGCTCTTCACAAGAGCAAAGACGATCCTCTCCATCGTGAGGATCACACCGTTACAATGAGTTGA

Protein sequence

MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTSLLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCGSNVASYTILIQAFCKSEKMDEFVGSSNRYTALHKSKDDPLHREDHTVTMS

Homology

[Close]

BLAST of Moc05g13150 vs. NCBI nr
Match: KAG7034267.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.4e-68
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 248 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPTLRHFTS 307

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAFHLLE+M++VN
Sbjct: 308 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFHLLEQMKKVN 367

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 368 CGPNAASYTILIQAFCKMEKMDE 390

[Close]

BLAST of Moc05g13150 vs. NCBI nr
Match: KAG6604102.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 269.2 bits (687), Expect = 2.4e-68
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 199 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPTLRHFTS 258

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAFHLLE+M++VN
Sbjct: 259 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFHLLEQMKKVN 318

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 319 CGPNAASYTILIQAFCKMEKMDE 341

[Close]

BLAST of Moc05g13150 vs. NCBI nr
Match: XP_022950461.1 (putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita moschata])

HSP 1 Score: 269.2 bits (687), Expect = 2.4e-68
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 199 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPTLRHFTS 258

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAFHLLE+M++VN
Sbjct: 259 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFHLLEQMKKVN 318

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 319 CGPNAASYTILIQAFCKMEKMDE 341

[Close]

BLAST of Moc05g13150 vs. NCBI nr
Match: XP_023544375.1 (putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.5 bits (685), Expect = 4.1e-68
Identity = 127/143 (88.81%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDA+CKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 199 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDAMCKNGSVKEAASLFEDMRIRFNPTLRHFTS 258

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAFHLLE+M++VN
Sbjct: 259 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFHLLEQMKKVN 318

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 319 CGPNAASYTILIQAFCKMEKMDE 341

[Close]

BLAST of Moc05g13150 vs. NCBI nr
Match: XP_022977892.1 (putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita maxima])

HSP 1 Score: 265.8 bits (678), Expect = 2.6e-67
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 199 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPTLRHFTS 258

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAF LLE+M++VN
Sbjct: 259 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLEQMKKVN 318

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 319 CGPNAASYTILIQAFCKMEKMDE 341

[Close]

BLAST of Moc05g13150 vs. ExPASy Swiss-Prot
Match: P0C8A0 (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX=3702 GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-52
Identity = 100/144 (69.44%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YG E DEYVF CLLDALCKNGSVKEA+ +FEDMR +F PNL++FTS
Sbjct: 182 MVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTS 241

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGK++EAK VLVQ+KE G EPDIVV+ NLL  YA AGKM DA+ L+ +MR+  
Sbjct: 242 LLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRG 301

Query: 121 CGSNVASYTILIQAFCKSEK-MDE 144
              NV  YT+LIQA C++EK MDE
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDE 325

[Close]

BLAST of Moc05g13150 vs. ExPASy Swiss-Prot
Match: Q9FH87 (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.0e-51
Identity = 96/143 (67.13%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK +EVLDEM ++G E DEYVF CLLDALCK+GSVK+AA LFEDMR+RF  NL++FTS
Sbjct: 198 MVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTS 257

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCR GK++EAK+VLVQ+ E GFEPDIV Y NLL  YA AGKM DA+ LL +MRR  
Sbjct: 258 LLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRG 317

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
              N   YT+LIQA CK ++M+E
Sbjct: 318 FEPNANCYTVLIQALCKVDRMEE 340

[Close]

BLAST of Moc05g13150 vs. ExPASy Swiss-Prot
Match: Q9LZP3 (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.6e-20
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 3   KKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTSLL 62
           KK V + + M +Y  ++      CLLD+L +    KEA  LF+ ++ RF PN+  +T LL
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 305

Query: 63  YGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCG 122
            GWCR   ++EA  +   + + G +PDIV +N +L    ++ K  DA  L   M+     
Sbjct: 306 NGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPC 365

Query: 123 SNVASYTILIQAFCKSEKMD 143
            NV SYTI+I+ FCK   M+
Sbjct: 366 PNVRSYTIMIRDFCKQSSME 385

[Close]

BLAST of Moc05g13150 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.3e-20
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 7   EVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIR-FNPNLKHFTSLLYGW 66
           E   EM R G   D  V+  L+D  CK G ++ A+  F +M  R   P++  +T+++ G+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 67  CREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCGSNV 126
           C+ G ++EA  +  ++   G EPD V +  L+  Y +AG M+DAF +   M +  C  NV
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 127 ASYTILIQAFCKSEKMD 143
            +YT LI   CK   +D
Sbjct: 457 VTYTTLIDGLCKEGDLD 473

[Close]

BLAST of Moc05g13150 vs. ExPASy Swiss-Prot
Match: Q3EAF8 (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.6e-20
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 3   KKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTSLL 62
           KK V + + M +Y  ++      CLLD+L +    KEA  LF+ ++ RF PN+  +T LL
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 305

Query: 63  YGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCG 122
            GWCR   ++EA  +   + + G +PDIV +N +L    ++ K  DA  L   M+     
Sbjct: 306 NGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPC 365

Query: 123 SNVASYTILIQAFCKSEKMD 143
            NV SYTI+I+ FCK   M+
Sbjct: 366 PNVRSYTIMIRDFCKQSSME 385

[Close]

BLAST of Moc05g13150 vs. ExPASy TrEMBL
Match: A0A6J1GEW3 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita moschata OX=3662 GN=LOC111453556 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.2e-68
Identity = 128/143 (89.51%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 199 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPTLRHFTS 258

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAFHLLE+M++VN
Sbjct: 259 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFHLLEQMKKVN 318

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 319 CGPNAASYTILIQAFCKMEKMDE 341

[Close]

BLAST of Moc05g13150 vs. ExPASy TrEMBL
Match: A0A6J1IJP9 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita maxima OX=3661 GN=LOC111478047 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.3e-67
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP L+HFTS
Sbjct: 199 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPTLRHFTS 258

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAF LLE+M++VN
Sbjct: 259 LLYGWCREGKILEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLEQMKKVN 318

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 319 CGPNAASYTILIQAFCKMEKMDE 341

[Close]

BLAST of Moc05g13150 vs. ExPASy TrEMBL
Match: A0A6J1DET4 (putative pentatricopeptide repeat-containing protein At5g65820 OS=Momordica charantia OX=3673 GN=LOC111020155 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.8e-67
Identity = 129/143 (90.21%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMRIRFNP+LKHFTS
Sbjct: 197 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRIRFNPHLKHFTS 256

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKILEAK+VLVQIKE GFEPDIVVYN LLG YAQAGKMRDAF LLEEMRRVN
Sbjct: 257 LLYGWCREGKILEAKYVLVQIKEAGFEPDIVVYNILLGGYAQAGKMRDAFDLLEEMRRVN 316

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N ASYTILIQAFCK EKMDE
Sbjct: 317 CGPNAASYTILIQAFCKLEKMDE 339

[Close]

BLAST of Moc05g13150 vs. ExPASy TrEMBL
Match: A0A0A0KPG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011710 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.9e-67
Identity = 124/143 (86.71%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMR+RFNPNL+HFTS
Sbjct: 192 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPNLRHFTS 251

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKI+EAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAF LL EM++VN
Sbjct: 252 LLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 311

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N AS+TILIQ+FCK+EKMDE
Sbjct: 312 CGPNAASFTILIQSFCKTEKMDE 334

[Close]

BLAST of Moc05g13150 vs. ExPASy TrEMBL
Match: A0A5A7VI13 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00860 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YGCE DEYVF CLLDALCKNGSVKEAASLFEDMR+RFNP+L+HFTS
Sbjct: 192 MVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFNPSLRHFTS 251

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGKI+EAKHVLVQIKE GFEPDIVVYNNLLG YAQAGKMRDAF LL EM++VN
Sbjct: 252 LLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 311

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
           CG N AS+TILIQAFCK EKMDE
Sbjct: 312 CGPNAASFTILIQAFCKMEKMDE 334

[Close]

BLAST of Moc05g13150 vs. TAIR 10
Match: AT3G49730.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-53
Identity = 100/144 (69.44%), Postives = 117/144 (81.25%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK VEVLDEM +YG E DEYVF CLLDALCKNGSVKEA+ +FEDMR +F PNL++FTS
Sbjct: 182 MVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTS 241

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCREGK++EAK VLVQ+KE G EPDIVV+ NLL  YA AGKM DA+ L+ +MR+  
Sbjct: 242 LLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRG 301

Query: 121 CGSNVASYTILIQAFCKSEK-MDE 144
              NV  YT+LIQA C++EK MDE
Sbjct: 302 FEPNVNCYTVLIQALCRTEKRMDE 325

[Close]

BLAST of Moc05g13150 vs. TAIR 10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 5.7e-52
Identity = 96/143 (67.13%), Postives = 114/143 (79.72%), Query Frame = 0


Query: 1   MVKKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTS 60
           MVKK +EVLDEM ++G E DEYVF CLLDALCK+GSVK+AA LFEDMR+RF  NL++FTS
Sbjct: 198 MVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTS 257

Query: 61  LLYGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVN 120
           LLYGWCR GK++EAK+VLVQ+ E GFEPDIV Y NLL  YA AGKM DA+ LL +MRR  
Sbjct: 258 LLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRG 317

Query: 121 CGSNVASYTILIQAFCKSEKMDE 144
              N   YT+LIQA CK ++M+E
Sbjct: 318 FEPNANCYTVLIQALCKVDRMEE 340

[Close]

BLAST of Moc05g13150 vs. TAIR 10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-21
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 3   KKVVEVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIRFNPNLKHFTSLL 62
           KK V + + M +Y  ++      CLLD+L +    KEA  LF+ ++ RF PN+  +T LL
Sbjct: 246 KKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLL 305

Query: 63  YGWCREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCG 122
            GWCR   ++EA  +   + + G +PDIV +N +L    ++ K  DA  L   M+     
Sbjct: 306 NGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPC 365

Query: 123 SNVASYTILIQAFCKSEKMD 143
            NV SYTI+I+ FCK   M+
Sbjct: 366 PNVRSYTIMIRDFCKQSSME 385

[Close]

BLAST of Moc05g13150 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-21
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 7   EVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIR-FNPNLKHFTSLLYGW 66
           E   EM R G   D  V+  L+D  CK G ++ A+  F +M  R   P++  +T+++ G+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 67  CREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCGSNV 126
           C+ G ++EA  +  ++   G EPD V +  L+  Y +AG M+DAF +   M +  C  NV
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 127 ASYTILIQAFCKSEKMD 143
            +YT LI   CK   +D
Sbjct: 457 VTYTTLIDGLCKEGDLD 473

[Close]

BLAST of Moc05g13150 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 5.2e-21
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 0


Query: 7   EVLDEMTRYGCELDEYVFRCLLDALCKNGSVKEAASLFEDMRIR-FNPNLKHFTSLLYGW 66
           E   EM R G   D  V+  L+D  CK G ++ A+  F +M  R   P++  +T+++ G+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 67  CREGKILEAKHVLVQIKEVGFEPDIVVYNNLLGEYAQAGKMRDAFHLLEEMRRVNCGSNV 126
           C+ G ++EA  +  ++   G EPD V +  L+  Y +AG M+DAF +   M +  C  NV
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 127 ASYTILIQAFCKSEKMD 143
            +YT LI   CK   +D
Sbjct: 457 VTYTTLIDGLCKEGDLD 473

The following BLAST results are available for this feature:

BLAST of Moc05g13150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034267.1	2.4e-68	89.51	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG6604102.1	2.4e-68	89.51	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_022950461.1	2.4e-68	89.51	putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita moscha...	[more]
XP_023544375.1	4.1e-68	88.81	putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita pepo s...	[more]
XP_022977892.1	2.6e-67	88.81	putative pentatricopeptide repeat-containing protein At5g65820 [Cucurbita maxima...	[more]

BLAST of Moc05g13150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C8A0	1.5e-52	69.44	Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana OX...	[more]
Q9FH87	8.0e-51	67.13	Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th...	[more]
Q9LZP3	5.6e-20	36.43	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]
Q0WVK7	7.3e-20	34.31	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q3EAF8	9.6e-20	36.43	Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidop...	[more]

BLAST of Moc05g13150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GEW3	1.2e-68	89.51	putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita mosc...	[more]
A0A6J1IJP9	1.3e-67	88.81	putative pentatricopeptide repeat-containing protein At5g65820 OS=Cucurbita maxi...	[more]
A0A6J1DET4	2.8e-67	90.21	putative pentatricopeptide repeat-containing protein At5g65820 OS=Momordica char...	[more]
A0A0A0KPG0	4.9e-67	86.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011710 PE=4 SV=1	[more]
A0A5A7VI13	1.4e-66	86.71	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Moc05g13150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49730.1	1.0e-53	69.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G65820.1	5.7e-52	67.13	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	4.0e-21	36.43	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	5.2e-21	34.31	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	5.2e-21	34.31	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..121 e-value: 1.0E-32 score: 115.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 88..137 e-value: 4.9E-15 score: 55.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 58..90 e-value: 2.4E-5 score: 22.2 coord: 22..48 e-value: 2.2E-6 score: 25.5 coord: 91..122 e-value: 1.6E-5 score: 22.7
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 58..86 e-value: 0.014 score: 15.6
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 16..48 e-value: 4.5E-9 score: 35.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 20..50 score: 9.88715
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 54..88 score: 10.183105
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 89..123 score: 10.742131
None	No IPR available	PANTHER	PTHR47933:SF9	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 1..143
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g13150.1	Moc05g13150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding