Moc05g02860 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g02860
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	SWIB domain-containing protein
Location	chr5: 1966193 .. 1967636 (-)
RNA-Seq Expression	Moc05g02860
Synteny	Moc05g02860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCGGATTGAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCCCTCTTAGCTCCGTCGAAATCCTCAGCTTCCGTTCCCGCCGCCGCCGCCGCCAAATCGAAGGCGACAGGGAAACCGAAGTCGGAGTCGAAGGAGAAGACTGCACCGAGCTCCGATACTGCCGCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGGCCGGCGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGGGCAACTTCTTGGGCGTACCGGAGGCATCTCGCACCGATGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGGTTCCACACTCTTTCCACTGCTATTTATGAATTTGATCGCATAGAGTGTTGAGCAGGCGAGAATCACTGACATTTTCTGGGAAATTGGTTGTTATCTGCGATTTTTGTTGGGTAATTTGGTCGGTCTAATGATTTTAGGGTAATATAAAGAGAAATTTTATCTCAAGTAAATAAATAAACTAGTTCCCGGTGCTTCCCATTTTCCCTTCCCCTACCCTGCAAGTAAACTTAGGAACTCGTGTATTTGTATGGAAAACGAGACATTGCCTTGTCCCGGATTAAGAGTTCGCAGCAATTTCGGAATGAAGGCGCAAAAAGCTTAACAATGGCGTCTCTTAATAGACGTTCTTACCTCGAAAAAGAGCTGGGAACTCCATGGGAAGTCTTCATTACAACGTGGGAGCTTATCAAAATTTTCTAATGGCCTATTGTTCTGGCGTTTAGACTGGTAATTTCCCTATGAAGCTGTTCTGAATGAAATCTTCCGTCATTCTCTCTTAAAAATCAAAGCTGATAACTCCTTTGGAATTGAAAATCTTCTAGTGTCTGCTAAACTTGGAATATCTAGCTGATAACTCCTAAAATTCCTCTTCATCTTTCACTGAGAACACTCACTCTTGCAAGGTCTAAATTATTTGATGAAGGGCCTGTCTAGTATTGCTTTGATTGTTTAAATTGCTATTTTAATTTCACAAATATTCAGTACCAATCACTGAGATGTGACCACCCCCTGTCTTCTGTAATGAATTTATGAGCATGGCAGTTAAGCCAAGGGTTAACATAAGCTTGAAGATACTAAATATCATACGAATTTGGTGTTGGAATTTGTTGAACTGCACGCATAAGTACCCATAGTTTTCAACTTTTCATCAAGTTTCAAGAGTCAAGAGCTCTACATTGCATTTTTAGTTGATAATGTGAGAATTTCTGTTGTCCAATCTATGGCTTAGTGAGATATTGTCATCGTCTTTGCCTGCAGAACCCTGCTAACAAGAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGAGAAAAGGTTGGTTTCTTGGAGATCGGAAAATTGCTCGCTCGCCATTTTGTGAAGAACTGA

mRNA sequence

ATGTCGTCCGGATTGAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCCCTCTTAGCTCCGTCGAAATCCTCAGCTTCCGTTCCCGCCGCCGCCGCCGCCAAATCGAAGGCGACAGGGAAACCGAAGTCGGAGTCGAAGGAGAAGACTGCACCGAGCTCCGATACTGCCGCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGGCCGGCGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGGGCAACTTCTTGGGCGTACCGGAGGCATCTCGCACCGATGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAACCCTGCTAACAAGAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGAGAAAAGGTTGGTTTCTTGGAGATCGGAAAATTGCTCGCTCGCCATTTTGTGAAGAACTGA

Coding sequence (CDS)

ATGTCGTCCGGATTGAGCAATGGCATTAGGGTTTTCAGAGGCTGTAGAGCCCTCTTAGCTCCGTCGAAATCCTCAGCTTCCGTTCCCGCCGCCGCCGCCGCCAAATCGAAGGCGACAGGGAAACCGAAGTCGGAGTCGAAGGAGAAGACTGCACCGAGCTCCGATACTGCCGCTGCAGCCGCGCCCAAGCCGAAAATCAAAAGGGAAATGACTCGGCCGGCGGGGATTCTGAAGGTCGCCCAGGTTTCTCCGGCGTTGGGCAACTTCTTGGGCGTACCGGAGGCATCTCGCACCGATGCCGTCAAGCAGATCTGGTCCTACATCAAGCTCCATAACCTTCAGAACCCTGCTAACAAGAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGAGAAAAGGTTGGTTTCTTGGAGATCGGAAAATTGCTCGCTCGCCATTTTGTGAAGAACTGA

Protein sequence

MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN

Homology

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BLAST of Moc05g02860 vs. NCBI nr
Match: XP_022146901.1 (upstream activation factor subunit spp27-like [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 9.0e-75
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of Moc05g02860 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima])

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VP  AA KS+ T K  +E KEKT P SD AAAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVP-PAAVKSRTTSKSNTEPKEKTPPRSDVAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK+KREMTR  G LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of Moc05g02860 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida])

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59
Identity = 131/155 (84.52%), Postives = 136/155 (87.74%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTA-AA 60
           MSSG SNGIRVFR CRALLAPSKSSA+V AA AAKS  T KPK +SK KT P+SDTA  +
Sbjct: 1   MSSGFSNGIRVFRACRALLAPSKSSATV-AATAAKSNTTSKPKPKSKVKTPPTSDTADVS 60

Query: 61  AAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANK 120
           A PKPKIKRE+TRP GILKV QVSPAL NFLGV EASR DAVKQIWSYIKLHNLQNPANK
Sbjct: 61  ATPKPKIKREITRPTGILKVTQVSPALSNFLGVSEASRIDAVKQIWSYIKLHNLQNPANK 120

Query: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           REIYCDDKLKAIFEGREKVGFLEIGKLLA HFVKN
Sbjct: 121 REIYCDDKLKAIFEGREKVGFLEIGKLLAHHFVKN 154

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BLAST of Moc05g02860 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 6.9e-59
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSG SNGIRVFRGC +LLAP KSSA+VP   A KSK   K  +E KEKT P SD AAAA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPPRSDVAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNP+NKR
Sbjct: 61  APKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of Moc05g02860 vs. NCBI nr
Match: KAG6582547.1 (hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018930.1 UAF30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSG SNGIRVFRGCR+LLAP KSSA+VP   A KSK   K  +E KEKT   SD AAAA
Sbjct: 1   MSSGFSNGIRVFRGCRSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPTRSDVAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNP+NKR
Sbjct: 61  APKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of Moc05g02860 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 37  KATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEAS 96
           +++G+ K++S+ K           +  P   R++T          +S +L + LG  E +
Sbjct: 91  RSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT----------LSKSLASLLGEHELT 150

Query: 97  RTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVK 154
           RT+ V+++W+YIK HNLQNP NK+EI CD+KL+ I    +     E+ K+LA H  +
Sbjct: 151 RTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL--GKSTNMFEMHKILASHMTE 195

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BLAST of Moc05g02860 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 43/122 (35.25%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 29  PAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKVAQVSPALGN 88
           P  +  K K   + KS+ K+K   S D+ + +  K                  +S  L  
Sbjct: 89  PLRSTRKRKGKSESKSKRKKKKNDSPDSNSISVRK----------------VLLSAPLQK 148

Query: 89  FLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGFLEIGKLLA 148
           FLG  E  RT  VK IW YIK H+LQNP ++REI CD+K++ IF   +K+    + KLL 
Sbjct: 149 FLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF--GKKMTMFSMNKLLT 192

Query: 149 RH 151
           +H
Sbjct: 209 KH 192

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BLAST of Moc05g02860 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.9e-09
Identity = 45/119 (37.82%), Postives = 65/119 (54.62%), Query Frame = 0


Query: 20  APSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAA---AAPKPKIKREMTRPAG- 79
           APS+  +    A A K+K     ++ ++E   P+  T           K KR    PA  
Sbjct: 57  APSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQD-PANN 116

Query: 80  -ILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFE 134
            + K  ++SP L  FLG+ + SR   VK++W YIK H+LQ+P +KR I CDDKLK++FE
Sbjct: 117 PLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

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BLAST of Moc05g02860 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 81  QVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGF 140
           ++S A  N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F
Sbjct: 207 KLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYF 266

Query: 141 LEIGKLLAR 150
             I +L+ R
Sbjct: 267 PRIPELMNR 274

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BLAST of Moc05g02860 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 23/67 (34.33%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 81  QVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVGF 140
           ++ P L   LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F
Sbjct: 296 KLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMKF 355

Query: 141 LEIGKLL 148
            EI + L
Sbjct: 356 SEIPQRL 361

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BLAST of Moc05g02860 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.3e-75
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of Moc05g02860 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 7.2e-62
Identity = 132/154 (85.71%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSG SNGIRVFRGCRALLAPSKSSA+VP  AA KS+ T K  +E KEKT P SD AAAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVP-PAAVKSRTTSKSNTEPKEKTPPRSDVAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK+KREMTR  G LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNPANKR
Sbjct: 61  APKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of Moc05g02860 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.3e-59
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60
           MSSG SNGIRVFRGC +LLAP KSSA+VP   A KSK   K  +E KEKT P SD AAAA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPPRSDVAAAA 60

Query: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120
           APKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNP+NKR
Sbjct: 61  APKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of Moc05g02860 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.6e-53
Identity = 125/158 (79.11%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGK--PKSE-SKEKTAPSSDTA 60
           MSSG +NGIRVFR CRALLAPSKSSA+VP A A KSK T K  PK +  K KT PSS  A
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVP-ATAPKSKTTSKLEPKPKLPKVKTPPSSVAA 60

Query: 61  -AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNP 120
             AA P+PKIK+EM+RP+GILKV QVSPAL NFLGV EASR+DAV QIWSYIKLHNLQNP
Sbjct: 61  GVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNP 120

Query: 121 ANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
            NKREIYCDDKLKAIFEGREKVGFLEIGK LARHFVKN
Sbjct: 121 DNKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

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BLAST of Moc05g02860 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.7e-53
Identity = 122/157 (77.71%), Postives = 132/157 (84.08%), Query Frame = 0


Query: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSE-SKEKTAPSSDTAA- 60
           MSSG +NG+RVFR CR LLAPSKSSA+VP A A KSK T KPK++  K KT PSS  AA 
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVP-ATAPKSKTTTKPKTKLPKVKTPPSSVAAAG 60

Query: 61  -AAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPA 120
            AA P+PKIK+  +RP+GILKV QVSPAL NFLGV EASRTDAV QIWSYIKLHNLQNP 
Sbjct: 61  VAATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           NKREIYCDDKLKAIFEGREKV FLEIGK+LARHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

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BLAST of Moc05g02860 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-33
Identity = 77/143 (53.85%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 11  VFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREM 70
           VFRG R+LLAP+  + S   +A +  K   KPK+++K K    SD+ A   P        
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTP-------- 67

Query: 71  TRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKA 130
            R  GI KV  VSP L  FLG  E SRTDA+K IW+YIK H+LQNPA+KREI+CD+ LK 
Sbjct: 68  -RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKL 127

Query: 131 IFEGREKVGFLEIGKLLARHFVK 154
           IFEG++KVGFLEI KLL+ HFVK
Sbjct: 128 IFEGKDKVGFLEISKLLSPHFVK 141

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BLAST of Moc05g02860 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 112.1 bits (279), Expect = 4.1e-25
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 58  AAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPA 117
           AA++   K  R+ T   GILKV  VS  L NF+G  E SRT AVK+IW YIKL+NLQNP 
Sbjct: 15  AASSTGAKTGRQGT---GILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPV 74

Query: 118 NKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 155
           NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Sbjct: 75  NKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of Moc05g02860 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-23
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 75  GILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEG 134
           GI K   VS  L +F G  E +R  A+K++W Y+KLHNLQNPANK+EI+CDDKLK IF+G
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 135 REKVGFLEIGKLLARHFVKN 155
           ++KVG  EI KLL+ HF K+
Sbjct: 92  KDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of Moc05g02860 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-22
Identity = 50/97 (51.55%), Postives = 70/97 (72.16%), Query Frame = 0


Query: 56  TAAAAAPKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQN 115
           T+A  + +P    +   P GI+K   VSP + + + +PE +RT A+K+IW+YIK H+LQ+
Sbjct: 46  TSATESSEPTATNKRV-PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQD 105

Query: 116 PANKREIYCDDKLKAIFEGREKVGFLEIGKLLARHFV 153
           P NKREI CD+KLK IFEGR++VGFLEI KL+  HF+
Sbjct: 106 PQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHFL 141

[Close]

BLAST of Moc05g02860 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 20  APSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAAAPKPKIKREMTRPAGILKV 79
           AP +SS   P++          P   +  +   +  +AAAA+  P    +   P GI+K 
Sbjct: 18  APLRSSMLSPSSLRL------SPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKP 77

Query: 80  AQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKREIYCDDKLKAIFEGREKVG 139
             VS A+ + +GVPE  RT A+K+IW+YIK H+LQ+P NKR+I CD+KLK IFEG+E+VG
Sbjct: 78  RPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVG 137

Query: 140 FLEIGKLLARHFV 153
           FLEI KL+  HF+
Sbjct: 138 FLEIAKLIGPHFL 144

The following BLAST results are available for this feature:

BLAST of Moc05g02860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146901.1	9.0e-75	100.00	upstream activation factor subunit spp27-like [Momordica charantia]	[more]
XP_022980440.1	1.5e-61	85.71	protein TRI1-like [Cucurbita maxima]	[more]
XP_038877222.1	3.1e-59	84.52	upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 ups...	[more]
XP_022924718.1	6.9e-59	82.47	upstream activation factor subunit spp27-like [Cucurbita moschata]	[more]
KAG6582547.1	1.2e-58	82.47	hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Moc05g02860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08747	2.8e-10	33.33	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	3.0e-09	35.25	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
O74503	8.9e-09	37.82	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9P7S3	1.3e-07	40.58	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q2TBN1	2.7e-05	34.33	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of Moc05g02860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0R8	4.3e-75	100.00	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1IWB1	7.2e-62	85.71	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1EDA2	3.3e-59	82.47	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0L3V0	3.6e-53	79.11	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 S...	[more]
A0A1S3AVG6	4.7e-53	77.71	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Moc05g02860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	4.1e-33	53.85	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	4.1e-25	59.79	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	8.5e-23	58.75	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	1.1e-22	51.55	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.4e-22	44.36	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 76..153 e-value: 3.7E-30 score: 116.2
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 70..154 e-value: 2.8E-27 score: 96.5
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 72..153
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 81..151 e-value: 6.2E-29 score: 99.7
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 75..153 score: 22.428686
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..68
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..153
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..153
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 81..151 e-value: 2.9346E-34 score: 113.022

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc05g02860.1	Moc05g02860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus