Moc04g37980 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g37980
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DCD (Development and Cell Death) domain protein
Location	chr4: 28440059 .. 28441790 (+)
RNA-Seq Expression	Moc04g37980
Synteny	Moc04g37980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGCTGGGAGGAATACTCGGACCTGTACAATGCAGGAAAAATCCCTGCCTCTTTGTACGTTAAATGGCAGTGTCACCGCCAGGAATCTCGGAAAAGAGTAAATTGGCTGGAGTTATTTTTGGTTGCAAGCACAGCACAATGCAAGAATGTCTATCCGAACAATTGTTTGGTTTGCTGGCCACTTCCTTTGCTGATCAACCATTTATTTTCAAATTTTACTGTCCTTTTTTAATATTCAATAACAAATAGGTTTTGTGATACTTTTTAATTTCTTGAATAGGATTGCCGGCTCCACATTTCTCTTATGTATGAAATATCGATCCTGGTTTGCCTCTGTTTCTCTTTAACTACAGTGACAGGAGGTGATAAGCACCAAGGTTGCTCGTGTTTACAAAGCTAGAGGTCCTTCTAGGATCCTTGCAAACATTCACAAAAACGACTAACTTACCGAATGATTCCAACCAAGAGTAAGGTTAGAAGATGAATCACTCTTAGATCGGACTTAGAATCTACGATATACACTCCTAGATCCTAAGACGACTCACTCCAGAATTAGCTTGATCGATACTAATCCAATGAATCGGTTTAACATCAAACCTAAAGCAAGATTTGAAAGAAGCAACACCAAAAGTGTTAAGGAACAAAAGTTCTTGAATTTCAATATGTTTTAATCTTAAGTTATCCATAACAAGAGCATTACAAGCCTTTAAATAGGCCAAATGGTCGTTCAACATAAGAACACCAAAAGTTTTTCAAAATACTACTTAATGCAAATTAAAACTTGATTGCAAATCATTCTAGACACTTAAATGCGGATCAGAAAACGTAGTCATGCTTCAAATGGTCTTATCTATGTGCTGTAGGAGGCGCTTCACATTTGGATATGGTTTGACAACTTTTGACTTCACAAACTCCAAAGAGGTGCAATCTGCAAAGGCACCTGTTCACGAATCTGCACACTTTTTTTGTCCTCCGTGCCATCTCTCAAAATAGACAACTTTTCCCGTGCCATCTTTGCTCCATTCTCTTCTTGACTCATTGAAGTAACATTATGAATAAATTCGGGCTCAAAACTCTTTGTTGGTTCTTGTGCATTAACAAGCTTTTGAAGGTGCAGTGTGAAAGCCTCTTGAATCTTCCTTGCCTTTCTTGTAATAATTGCTCCTTTGATATATGTAATTGGTCACAAATAGATTCGTATATTTGAGGCTACTAGCCGAGGCAATCAGTATATTAGTCCATATGCTTGGACTGATGACGGTATGGATTATACTCCATATTCTGCACAGGTATCTTTATGTGTAATGGAGATGCTTCGTCTTGTGTAACATTGTTGGATGCTCATAATTGAGGATCTCTTACTATTTTGTTGATAAGGTTAAATTTAAGACCCGGATGCAATGCCACCCCTTGCTGGAAGATCAGTTTAGGCCTATCATTTCTGACAATTATTACGAGTCAAAGCTTTTTTGGTTTGAACTGGACCAAAGGCAGACAGACAGGTTGATTGCTTTATTTTCATCTTCACCAATCTTGACGACTGTTTCCCCATTGAACAGAGCGAGCAGTTCATTGAAAACTTTCCAAACTATCAATGTAAGAGAAGACAGCACCAATAGTTCGGTATTTTCTTCAAACATAAGTGTTACTTGTCCAGATTCAAAGAAAAAGTGGAGCTCCTTGTTCAAAGTCTCTCCTACTGTTGCGAAAGAGGATATTGAATTTTGA

mRNA sequence

ATGGGCGCTGGGAGGAATACTCGGACCTGTACAATGCAGGAAAAATCCCTGCCTCTTTGTACGTTAAATGGCAGTGTCACCGCCAGGAATCTCGGAAAAGAGAGGCGCTTCACATTTGGATATGGTTTGACAACTTTTGACTTCACAAACTCCAAAGAGATTCGTATATTTGAGGCTACTAGCCGAGGCAATCAGTATATTAGTCCATATGCTTGGACTGATGACGGTATGGATTATACTCCATATTCTGCACAGGTTAAATTTAAGACCCGGATGCAATGCCACCCCTTGCTGGAAGATCAGTTTAGGCCTATCATTTCTGACAATTATTACGAGTCAAAGCTTTTTTGGTTTGAACTGGACCAAAGGCAGACAGACAGGTTGATTGCTTTATTTTCATCTTCACCAATCTTGACGACTGTTTCCCCATTGAACAGAGCGAGCAGTTCATTGAAAACTTTCCAAACTATCAATGTAAGAGAAGACAGCACCAATAGTTCGGTATTTTCTTCAAACATAAGTGTTACTTGTCCAGATTCAAAGAAAAAGTGGAGCTCCTTGTTCAAAGTCTCTCCTACTGTTGCGAAAGAGGATATTGAATTTTGA

Coding sequence (CDS)

ATGGGCGCTGGGAGGAATACTCGGACCTGTACAATGCAGGAAAAATCCCTGCCTCTTTGTACGTTAAATGGCAGTGTCACCGCCAGGAATCTCGGAAAAGAGAGGCGCTTCACATTTGGATATGGTTTGACAACTTTTGACTTCACAAACTCCAAAGAGATTCGTATATTTGAGGCTACTAGCCGAGGCAATCAGTATATTAGTCCATATGCTTGGACTGATGACGGTATGGATTATACTCCATATTCTGCACAGGTTAAATTTAAGACCCGGATGCAATGCCACCCCTTGCTGGAAGATCAGTTTAGGCCTATCATTTCTGACAATTATTACGAGTCAAAGCTTTTTTGGTTTGAACTGGACCAAAGGCAGACAGACAGGTTGATTGCTTTATTTTCATCTTCACCAATCTTGACGACTGTTTCCCCATTGAACAGAGCGAGCAGTTCATTGAAAACTTTCCAAACTATCAATGTAAGAGAAGACAGCACCAATAGTTCGGTATTTTCTTCAAACATAAGTGTTACTTGTCCAGATTCAAAGAAAAAGTGGAGCTCCTTGTTCAAAGTCTCTCCTACTGTTGCGAAAGAGGATATTGAATTTTGA

Protein sequence

MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKERRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVKFKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRASSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIEF

Homology

[Close]

BLAST of Moc04g37980 vs. NCBI nr
Match: XP_038885976.1 (uncharacterized protein LOC120076281 [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 2.9e-65
Identity = 150/233 (64.38%), Postives = 164/233 (70.39%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKER--RFTFG--------------YGLT 60
           MG GR TRT TMQEK LP  T NGSVTARNLGK +     FG              +GL+
Sbjct: 1   MGGGRKTRTFTMQEKGLPPWTSNGSVTARNLGKSKLAGVIFGCKHNTMQECLSEQLFGLS 60

Query: 61  T-----------------FDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
           T                 F++++ K   IFEATS GN  ISPYAW  DGMDYTPYSAQVK
Sbjct: 61  TPHISYVRNINPGLPLFLFNYSDRKLHGIFEATSNGNLNISPYAWAADGMDYTPYSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYYE+KLFWFELDQRQT+RLIALFS SPIL TVSP  R 
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYEAKLFWFELDQRQTNRLIALFSYSPILETVSPPERP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
           SSSLK+ QTINVREDS NS VFSSN++V   DSKKKWSSLFK S T  +ED E
Sbjct: 181 SSSLKSLQTINVREDS-NSEVFSSNMNVARLDSKKKWSSLFKGSHTDVREDGE 232

[Close]

BLAST of Moc04g37980 vs. NCBI nr
Match: XP_016899395.1 (PREDICTED: uncharacterized protein LOC103485594 isoform X3 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-59
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. NCBI nr
Match: XP_008441487.1 (PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo] >KAA0054992.1 ring canal kelch-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-59
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. NCBI nr
Match: XP_016899396.1 (PREDICTED: uncharacterized protein LOC103485594 isoform X4 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-59
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. NCBI nr
Match: XP_008441488.1 (PREDICTED: uncharacterized protein LOC103485594 isoform X2 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-59
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. ExPASy Swiss-Prot
Match: P37707 (B2 protein OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.4e-07
Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = 0


Query: 35  RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTD-DGMDYTPYSAQVKFKTRMQ 94
           R  T G  L  ++++  +   +FEA S G   I P AW D      + + AQV+  TR  
Sbjct: 106 RAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKI 165

Query: 95  CHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSS 136
           C PL ED FRPI+  ++Y+   F  EL+  +   L+ +F  +
Sbjct: 166 CEPLEEDSFRPIL--HHYDGPKFRLELNIPEAISLLDIFEET 205

[Close]

BLAST of Moc04g37980 vs. ExPASy Swiss-Prot
Match: C6TAQ0 (DCD domain-containing protein NRP-B OS=Glycine max OX=3847 GN=NRP-B PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 0


Query: 35  RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGM-DYTPYSAQVKFKTRMQ 94
           R  T G  L  ++++  +   IFEA S G   I P AW D      + + AQV+  TR  
Sbjct: 219 RAITPGLPLFLYNYSTHQLHGIFEAASFGGTNIDPSAWEDKKCPGESRFPAQVRVITRKT 278

Query: 95  CHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFS 134
           C PL ED FRPI+  ++Y+   F  EL+  +   L+ +F+
Sbjct: 279 CEPLEEDSFRPIL--HHYDGPKFRLELNVPEALSLLDIFA 316

[Close]

BLAST of Moc04g37980 vs. ExPASy Swiss-Prot
Match: Q5JZR1 (DCD domain-containing protein NRP-A OS=Glycine max OX=3847 GN=NRP-A PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.4e-06
Identity = 34/101 (33.66%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 35  RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGM-DYTPYSAQVKFKTRMQ 94
           R  T G  +  ++++  +   IFEA S G   I P AW D      + + AQV+  TR  
Sbjct: 257 RTITPGLPIFLYNYSTHQLHGIFEAASFGGSNIDPTAWEDKKCPGESRFPAQVQVITRKV 316

Query: 95  CHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSS 135
           C PL ED FRPI+  ++Y+   F  EL   +   L+ +F++
Sbjct: 317 CEPLEEDSFRPIL--HHYDGPKFRLELSVPEALSLLDIFAN 355

[Close]

BLAST of Moc04g37980 vs. ExPASy TrEMBL
Match: A0A5A7UGQ1 (Ring canal kelch-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001400 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.8e-60
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. ExPASy TrEMBL
Match: A0A1S4DUJ9 (uncharacterized protein LOC103485594 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.8e-60
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. ExPASy TrEMBL
Match: A0A1S3B4B6 (ring canal kelch homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.8e-60
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. ExPASy TrEMBL
Match: A0A1S3B344 (uncharacterized protein LOC103485594 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.8e-60
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. ExPASy TrEMBL
Match: A0A1S4DTS8 (uncharacterized protein LOC103485594 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 8.8e-60
Identity = 132/233 (56.65%), Postives = 153/233 (65.67%), Query Frame = 0


Query: 1   MGAGRNTRTCTMQEKSLPLCTLNGSVTARNLGKE-------------------------- 60
           MGAGR  +T  MQEK+LP  T NGSVT+RNLGK                           
Sbjct: 1   MGAGRKKQTFVMQEKALPPWTSNGSVTSRNLGKSKLAGVIFGSKHNTMQECLSKQLFGLP 60

Query: 61  -------RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVK 120
                  R    G  L  F++++ K   IFEAT  G   ISPYAWT DGMDYTP+SAQVK
Sbjct: 61  TPHFSYVRNINPGLPLFLFNYSDRKLHGIFEATCNGTLNISPYAWTADGMDYTPFSAQVK 120

Query: 121 FKTRMQCHPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRA 180
           FKTRMQCHPLLEDQFRPII+DNYY++KLFWFELDQRQT+RLIALFSSSPI+ TVS     
Sbjct: 121 FKTRMQCHPLLEDQFRPIIADNYYQAKLFWFELDQRQTNRLIALFSSSPIVGTVSSSESP 180

Query: 181 SSSLKTFQTINVREDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAKEDIE 201
            S  +  QT+N+RED+ NS  FSSN++V C DSKKKWSSLF+ S T  +ED E
Sbjct: 181 RSLFEALQTVNLREDNNNSKAFSSNMNVACLDSKKKWSSLFQGSHTDVREDGE 233

[Close]

BLAST of Moc04g37980 vs. TAIR 10
Match: AT5G01660.1 (CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT3G11000.1); Has 16133 Blast hits to 7053 proteins in 482 species: Archae - 40; Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants - 1896; Viruses - 673; Other Eukaryotes - 1230 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 2.6e-19
Identity = 50/132 (37.88%), Postives = 70/132 (53.03%), Query Frame = 0


Query: 35  RRFTFGYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVKFKTRMQC 94
           ++   G  L  F++++     IFEA   G     PY WT DG + T Y AQV    R+QC
Sbjct: 50  QKIDIGLPLFLFNYSDRTLHGIFEAAGCGQLNFDPYGWTSDGSERTSYPAQVPISVRLQC 109

Query: 95  HPLLEDQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRASSSLKTF 154
            PL E++F+P I+DNYY S  FWFELD  QT +L  L +S  +     P     ++ + F
Sbjct: 110 EPLSEEKFKPAIADNYYSSHHFWFELDHFQTRKLTCLLTSFAV--KPKPPMNTPNTRQIF 169

Query: 155 QTINVREDSTNS 167
           + I+  E   NS
Sbjct: 170 RLISSSEKKENS 179

[Close]

BLAST of Moc04g37980 vs. TAIR 10
Match: AT3G11000.1 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 42  GLTTFDFTNSKEI--RIFEATSRGNQYISPYAWTDDGMDYTPYSAQVKFKTRMQCHPLLE 101
           GLT F F  S      IFEA S G   I   AW+ +G D +PY AQVK + R++C PL E
Sbjct: 48  GLTLFLFNYSDRTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPE 107

Query: 102 DQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRASSSLKTFQTINV 161
           ++F P+I +NY + K+FWFELD+ QT++L+ LF  SP   +V P   +  ++        
Sbjct: 108 EKFSPVIVENYNDDKMFWFELDRGQTNKLLRLFKPSP---SVRPPTISRDAVPP-----P 167

Query: 162 REDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAK 197
           R+    SS+  + I  +      KWS+LFK S    K
Sbjct: 168 RKPIPASSL--AQIGDSGATRIDKWSNLFKSSDESTK 194

[Close]

BLAST of Moc04g37980 vs. TAIR 10
Match: AT3G11000.2 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.3e-19
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 42  GLTTFDFTNSKEI--RIFEATSRGNQYISPYAWTDDGMDYTPYSAQVKFKTRMQCHPLLE 101
           GLT F F  S      IFEA S G   I   AW+ +G D +PY AQVK + R++C PL E
Sbjct: 167 GLTLFLFNYSDRTLHGIFEAASEGKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPE 226

Query: 102 DQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPILTTVSPLNRASSSLKTFQTINV 161
           ++F P+I +NY + K+FWFELD+ QT++L+ LF  SP   +V P   +  ++        
Sbjct: 227 EKFSPVIVENYNDDKMFWFELDRGQTNKLLRLFKPSP---SVRPPTISRDAVPP-----P 286

Query: 162 REDSTNSSVFSSNISVTCPDSKKKWSSLFKVSPTVAK 197
           R+    SS+  + I  +      KWS+LFK S    K
Sbjct: 287 RKPIPASSL--AQIGDSGATRIDKWSNLFKSSDESTK 313

[Close]

BLAST of Moc04g37980 vs. TAIR 10
Match: AT2G35140.1 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-09
Identity = 34/98 (34.69%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 40  GYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVKFKTRMQCHPLLE 99
           G  L  F+F   +   +F+A S G   I P A+   G     + AQVKF  + +C PL E
Sbjct: 58  GMMLFLFEFEKRELHGVFQACSDGAINIEPNAFRSSGKQ---FPAQVKFTEKWRCRPLCE 117

Query: 100 DQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPI 138
            +F   I +NY+    F F L + Q  RL+ LFS   +
Sbjct: 118 SEFGNAIHENYFTPTKFNFGLSKAQVQRLLKLFSMKKV 152

[Close]

BLAST of Moc04g37980 vs. TAIR 10
Match: AT2G35140.2 (DCD (Development and Cell Death) domain protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-09
Identity = 34/98 (34.69%), Postives = 48/98 (48.98%), Query Frame = 0


Query: 40  GYGLTTFDFTNSKEIRIFEATSRGNQYISPYAWTDDGMDYTPYSAQVKFKTRMQCHPLLE 99
           G  L  F+F   +   +F+A S G   I P A+   G     + AQVKF  + +C PL E
Sbjct: 58  GMMLFLFEFEKRELHGVFQACSDGAINIEPNAFRSSGKQ---FPAQVKFTEKWRCRPLCE 117

Query: 100 DQFRPIISDNYYESKLFWFELDQRQTDRLIALFSSSPI 138
            +F   I +NY+    F F L + Q  RL+ LFS   +
Sbjct: 118 SEFGNAIHENYFTPTKFNFGLSKAQVQRLLKLFSMKKV 152

The following BLAST results are available for this feature:

BLAST of Moc04g37980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885976.1	2.9e-65	64.38	uncharacterized protein LOC120076281 [Benincasa hispida]	[more]
XP_016899395.1	1.8e-59	56.65	PREDICTED: uncharacterized protein LOC103485594 isoform X3 [Cucumis melo]	[more]
XP_008441487.1	1.8e-59	56.65	PREDICTED: ring canal kelch homolog isoform X1 [Cucumis melo] >KAA0054992.1 ring...	[more]
XP_016899396.1	1.8e-59	56.65	PREDICTED: uncharacterized protein LOC103485594 isoform X4 [Cucumis melo]	[more]
XP_008441488.1	1.8e-59	56.65	PREDICTED: uncharacterized protein LOC103485594 isoform X2 [Cucumis melo]	[more]

BLAST of Moc04g37980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P37707	6.4e-07	33.33	B2 protein OS=Daucus carota OX=4039 PE=2 SV=1	[more]
C6TAQ0	1.1e-06	35.00	DCD domain-containing protein NRP-B OS=Glycine max OX=3847 GN=NRP-B PE=2 SV=1	[more]
Q5JZR1	2.4e-06	33.66	DCD domain-containing protein NRP-A OS=Glycine max OX=3847 GN=NRP-A PE=2 SV=1	[more]

BLAST of Moc04g37980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGQ1	8.8e-60	56.65	Ring canal kelch-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4DUJ9	8.8e-60	56.65	uncharacterized protein LOC103485594 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B4B6	8.8e-60	56.65	ring canal kelch homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485594 PE=4...	[more]
A0A1S3B344	8.8e-60	56.65	uncharacterized protein LOC103485594 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DTS8	8.8e-60	56.65	uncharacterized protein LOC103485594 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Moc04g37980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01660.1	2.6e-19	37.88	CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IP...	[more]
AT3G11000.1	3.3e-19	38.85	DCD (Development and Cell Death) domain protein	[more]
AT3G11000.2	3.3e-19	38.85	DCD (Development and Cell Death) domain protein	[more]
AT2G35140.1	7.0e-09	34.69	DCD (Development and Cell Death) domain protein	[more]
AT2G35140.2	7.0e-09	34.69	DCD (Development and Cell Death) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013989	Development/cell death domain	SMART	SM00767	dcd	coord: 17..134 e-value: 7.3E-11 score: 35.7
IPR013989	Development/cell death domain	PFAM	PF10539	Dev_Cell_Death	coord: 38..132 e-value: 6.9E-25 score: 87.3
IPR013989	Development/cell death domain	PROSITE	PS51222	DCD	coord: 1..134 score: 28.880615
None	No IPR available	PANTHER	PTHR46034:SF23	DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN	coord: 42..166
IPR044832	DCD domain-containing protein NRP-like	PANTHER	PTHR46034	FAMILY NOT NAMED	coord: 42..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g37980.1	Moc04g37980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034976	response to endoplasmic reticulum stress