Moc04g37750 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g37750
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RING-H2 finger protein ATL74
Location	chr4: 28300801 .. 28302946 (-)
RNA-Seq Expression	Moc04g37750
Synteny	Moc04g37750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGTCCGATCACCACCGTCACCGTCCCCACCGCTTCCTCCTCGACGGCGACGCGACGGCGCCGCCGTCGAATGGAAACAGAACGCGAAGTTCGTACAGCAACGAAGCGAATTTCGACACGAATATGGTGATAATCCTCGCGGCGTTACTCTGCGCGCTGATTTGCGCTCTCGGACTGAATTCGATCGTCCGCTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACGGCCGGCGGCACATCCACGCGCCTCGCCGCCACGGGGCTGAAGAAAAGCGCATTACGCCAAATTCCGGTGGCCGTGTACGGGTCGGAGTCTGGTCTAGAGATCCGAGAAACGGACTGCCCTATTTGCTTGGGAGATTTCATCGCCGGCGAGAAAATCAAAGTTCTGCCCAAATGTAACCACGAGTTTCACGTACGATGTATCGACACGTGGTTGGCTTCCCACTCGTCTTGTCCGACATGTCGTCAGTCGCTGCTCGAACAACAGTCGTGTTCTGAATCGGCGGTAGCTGAAGCCGGAAACCGACCCGCCGGAAATTCGTCGGCCGGCGGCCAAGGTGAGATCTCGATTACTGTAGATGAAATTAGCTGATTTTAAGCGTTTGCATTTCATTTGCATTTGCACATAAATATTCTTTATTTCTTTTCAGATTTTTAGTTTTAGCTTCTTTTTTTTGTAATAATCCGAATTATAATATAATTAGTAGCTGCCTTTATGTATAATAAATAAATAACAAAGTAATCAATTTGAAAATTTTAGATTTAGATGAGAGCTCATGCATGCCATTTTGAATCTTTTGCTTCAATATAGCACAATAGTTTCAATCAATAAAGATAGAAATTTTGTTTCTTCAAAATTCCATTTCTTTGTTCAAATCCTTTATATTTTTAAAGTACAGATGATGTTAGAGAAGTTGGCATTGTTTGTTTTTTCAATTTCAATTTGCACCTCAAATTATCATGATAGGCTCTTTTTTTTTTCAGTAACAAATTACGAAACTTGTGAAAACTCATAAAAGACAAAATAATTATACCATAACGTACTAATGCATGAATAGAATTCTGATATAAATAGTGTTGAAAATTATAAAAATAATATTTTCATGTTTGGAGTATTTTTAGATTTTTTTTTAATTTCAAATTTTAAATTACAGAATTACATATTTTTTTAATAAATATATCAACTCATTTTATTTTTATTTTCATTTTATTTTTAGATTTAAACTTAGTTTCTATTTGGTCCTTAAATTTCAAAAATGACGTATTTGATTCTTGAAGTTTGAATTTAGTTTTTAATTGCTTCCTGATGTTTGAGTTTGATTTCTACTTAATCATTGAGGTTTGAGTTTGATTTTTAATTAATCCATGAGTTGAGAACAATTACTTGAATTAACGGAATGATGATGTCATAATTAACATATGTTGATTAGACATGTTGTTACTTAGGCAAAATTGAATGAAGAATCTAACAAAGGTCAACTAAGGGTCAACTTAATTGACCCTTAACTCATGAATCAATAACAAATCAAATTCAAACTTTATTGACCAATTAAAAACTAAATTTAAACGTGAGAGACTAAACATGTCACTTTTGAAATTTTATAGACCAAAATGAAACTAAATTTAAATCTCAAGGACCAAAAATTATGGTTTTTTAACTCAAAAAACCGAAACTAAGTCTAAACATAAACCACCAAATTGTATTTTACCCTATTTTAAAATAAGAAATCAAATGCATTCAATTAAAAACATAATTTTTTAGTTTAAATATTGTACTCTATTTGGTACATTAAAATAAATAATATCGTATTGATTAGTTTAAATATTTATAATACAAAAAAAGGAAATTAGCCATTTCAATTAAAAACTTCATTCTTCCTAGTACAAGATGAAGAAAAAACCACAAACTTTTTTTTTTTTTCGAGTACAACAGTATAACTTCCAATTGATTGGCGAGTTAGGGGAAATTTGACATAATTTAAGATGAGTCACATCCTTAATAAATAAATAAATAATTAGTACATAGAAATTGTGGTAGAATAGGGGTTGTACAATTAATTGAATTTAATGTAGTTTGGTGAGCAGAAATGTGTCTTTTATAAGCTATGATTTAATAATTAGGAATATGA

mRNA sequence

ATGGCGATGGCGTCCGATCACCACCGTCACCGTCCCCACCGCTTCCTCCTCGACGGCGACGCGACGGCGCCGCCGTCGAATGGAAACAGAACGCGAAGTTCGTACAGCAACGAAGCGAATTTCGACACGAATATGGTGATAATCCTCGCGGCGTTACTCTGCGCGCTGATTTGCGCTCTCGGACTGAATTCGATCGTCCGCTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACGGCCGGCGGCACATCCACGCGCCTCGCCGCCACGGGGCTGAAGAAAAGCGCATTACGCCAAATTCCGGTGGCCGTGTACGGGTCGGAGTCTGGTCTAGAGATCCGAGAAACGGACTGCCCTATTTGCTTGGGAGATTTCATCGCCGGCGAGAAAATCAAAGTTCTGCCCAAATGTAACCACGAGTTTCACGTACGATGTATCGACACGTGGTTGGCTTCCCACTCGTCTTGTCCGACATGTCGTCAGTCGCTGCTCGAACAACAGTCGTGTTCTGAATCGGCGGTAGCTGAAGCCGGAAACCGACCCGCCGGAAATTCGTCGGCCGGCGGCCAAGGAATATGA

Coding sequence (CDS)

ATGGCGATGGCGTCCGATCACCACCGTCACCGTCCCCACCGCTTCCTCCTCGACGGCGACGCGACGGCGCCGCCGTCGAATGGAAACAGAACGCGAAGTTCGTACAGCAACGAAGCGAATTTCGACACGAATATGGTGATAATCCTCGCGGCGTTACTCTGCGCGCTGATTTGCGCTCTCGGACTGAATTCGATCGTCCGCTGCGCCCTCCGCTGCAGCCGGCGGTTCGCCTTCGAGACGGCCGGCGGCACATCCACGCGCCTCGCCGCCACGGGGCTGAAGAAAAGCGCATTACGCCAAATTCCGGTGGCCGTGTACGGGTCGGAGTCTGGTCTAGAGATCCGAGAAACGGACTGCCCTATTTGCTTGGGAGATTTCATCGCCGGCGAGAAAATCAAAGTTCTGCCCAAATGTAACCACGAGTTTCACGTACGATGTATCGACACGTGGTTGGCTTCCCACTCGTCTTGTCCGACATGTCGTCAGTCGCTGCTCGAACAACAGTCGTGTTCTGAATCGGCGGTAGCTGAAGCCGGAAACCGACCCGCCGGAAATTCGTCGGCCGGCGGCCAAGGAATATGA

Protein sequence

MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGNRPAGNSSAGGQGI

Homology

[Close]

BLAST of Moc04g37750 vs. NCBI nr
Match: XP_022134542.1 (RING-H2 finger protein ATL74 [Momordica charantia])

HSP 1 Score: 385.2 bits (988), Expect = 3.3e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RPAGNSSAGGQGI 194
           RPAGNSSAGGQGI
Sbjct: 181 RPAGNSSAGGQGI 193

[Close]

BLAST of Moc04g37750 vs. NCBI nr
Match: XP_038885444.1 (RING-H2 finger protein ATL74-like [Benincasa hispida])

HSP 1 Score: 338.2 bits (866), Expect = 4.7e-89
Identity = 172/192 (89.58%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR RPHR LLD D TA PSNG+RTR+SYSNEANFDTNMVIILAALLCALI AL
Sbjct: 1   MTMESNHHRPRPHRLLLDADTTAAPSNGSRTRNSYSNEANFDTNMVIILAALLCALIFAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RLAATGLKKSALRQIPVAVYGSESGL+IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLAATGLKKSALRQIPVAVYGSESGLKIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESA AEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSASESAEAEAGN 180

Query: 181 RPAGNSSAGGQG 193
            PAGNSSA GQG
Sbjct: 181 PPAGNSSASGQG 192

[Close]

BLAST of Moc04g37750 vs. NCBI nr
Match: XP_011656436.1 (RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protein Csa_005410 [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 4.7e-89
Identity = 170/193 (88.08%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR RP R LLD D TAPPSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL ATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDF+AGEKIK+LPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESAV EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSAGGQGI 194
           R AGNSSA GQGI
Sbjct: 181 RGAGNSSASGQGI 193

[Close]

BLAST of Moc04g37750 vs. NCBI nr
Match: KAA0052006.1 (RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 finger protein ATL72 [Cucumis melo var. makuwa])

HSP 1 Score: 334.0 bits (855), Expect = 8.9e-88
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 3   MASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGL 62
           M S+HHR R HR LLD D TA PSNG+RTR+SY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET GGT++RL A+GLKKSALRQIPVAVYGSE+GLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGNRP 182
           LGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSAGGQG 193
           AGNSSA GQG
Sbjct: 181 AGNSSASGQG 190

[Close]

BLAST of Moc04g37750 vs. NCBI nr
Match: KAG7016045.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 333.6 bits (854), Expect = 1.2e-87
Identity = 166/192 (86.46%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           MAM SDHHR RPHR LLD + T  PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 43  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 102

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FET GGT++RLAATGLKKSALR++PV VYGSESGL IRETDCP
Sbjct: 103 GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 162

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 163 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 222

Query: 181 RPAGNSSAGGQG 193
           RPAGNSSA GQG
Sbjct: 223 RPAGNSSASGQG 234

[Close]

BLAST of Moc04g37750 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.2e-44
Identity = 99/163 (60.74%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 14  RFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           R LL+  A A P+N N       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFE-------TAGGTSTRL-AATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 133
           RRF  +        A     RL AATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNH FHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Moc04g37750 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-42
Identity = 93/163 (57.06%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 14  RFLLDGDAT-------APPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIV 73
           RFLL   AT       A P     + S+  N A+ DT+MVIILAALLCALICALG+NS++
Sbjct: 3   RFLLATQATPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVL 62

Query: 74  RCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDF 133
           RC LRC+RRF        +    A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF
Sbjct: 63  RCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDF 122

Query: 134 IAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           + GE ++VLPKCNH FHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 123 VEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Moc04g37750 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-40
Identity = 85/154 (55.19%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 13  HRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HR LL+       ++G+     Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKI 132
               +   A GT    A  GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Moc04g37750 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-36
Identity = 74/143 (51.75%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 33  SSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETAGGT-STRLAAT 92
           S Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E  G     RL  T
Sbjct: 44  SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNT 103

Query: 93  GLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKIKVLPKCNHEFHVRCIDTWL 152
           G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP C+H FHVRCID WL
Sbjct: 104 GVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWL 163

Query: 153 ASHSSCPTCRQSLLEQQSCSESA 175
           +SHSSCPTCR  L+  Q+C + A
Sbjct: 164 SSHSSCPTCRHCLI--QTCEKIA 184

[Close]

BLAST of Moc04g37750 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.7e-30
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 36  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFE--TAGGTSTRLAAT-G 95
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR S RF         +STR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 96  LKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLA 155
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNH FHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 156 SHSSCPTCRQSLLE 167
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

[Close]

BLAST of Moc04g37750 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 181 RPAGNSSAGGQGI 194
           RPAGNSSAGGQGI
Sbjct: 181 RPAGNSSAGGQGI 193

[Close]

BLAST of Moc04g37750 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.6e-89
Identity = 169/192 (88.02%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           M M S+HHR RP R LLD D TAPPSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRFAFET GGT++RL ATGLKKSALRQIPVAVYGSE+GLEIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDF+AGEKIK+LPKCNH FHVRCIDTWLASHSSCPTCRQSLLEQQS SESAV EAGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 181 RPAGNSSAGGQG 193
           R AGNSSA GQG
Sbjct: 181 RGAGNSSASGQG 192

[Close]

BLAST of Moc04g37750 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.3e-88
Identity = 168/190 (88.42%), Postives = 177/190 (93.16%), Query Frame = 0


Query: 3   MASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGL 62
           M S+HHR R HR LLD D TA PSNG+RTR+SY+NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 63  NSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPIC 122
           NSIVRCALRCSRRFAFET GGT++RL A+GLKKSALRQIPVAVYGSE+GLEIRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 123 LGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGNRP 182
           LGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL+EQQS SESA AEAGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 183 AGNSSAGGQG 193
           AGNSSA GQG
Sbjct: 181 AGNSSASGQG 190

[Close]

BLAST of Moc04g37750 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 165/192 (85.94%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           MAM SDHHR RPHR LLD + T  PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCA RCSRRF+FET GGT++RLAATGLKKSALR++PV VYGSESGL IRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQG 193
           RPAGNSSA GQG
Sbjct: 181 RPAGNSSASGQG 192

[Close]

BLAST of Moc04g37750 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 2.1e-87
Identity = 165/192 (85.94%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60
           MAM SDHHR RPHR LLD + T  PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120
           GLNSIVRCALRCSRRF+FET GGT++RLAATGLKKSALR++PV VYGSESGL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 181 RPAGNSSAGGQG 193
           RPAGN SA GQG
Sbjct: 181 RPAGNPSASGQG 192

[Close]

BLAST of Moc04g37750 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-45
Identity = 99/163 (60.74%), Postives = 115/163 (70.55%), Query Frame = 0


Query: 14  RFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCS 73
           R LL+  A A P+N N       N+  FDTNMVIILAALLCALICAL LNS +RC LR +
Sbjct: 3   RLLLEPQANA-PANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 74  RRFAFE-------TAGGTSTRL-AATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGD 133
           RRF  +        A     RL AATGLKK AL+QIPV +YGS   ++++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 134 FIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQ 169
           F  GEK++VLPKCNH FHVRCIDTWL S SSCPTCRQSLL +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of Moc04g37750 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43
Identity = 93/163 (57.06%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 14  RFLLDGDAT-------APPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIV 73
           RFLL   AT       A P     + S+  N A+ DT+MVIILAALLCALICALG+NS++
Sbjct: 3   RFLLATQATPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVL 62

Query: 74  RCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDF 133
           RC LRC+RRF        +    A G+KK AL+ IPV  Y  E  L+++ T+C ICLGDF
Sbjct: 63  RCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDF 122

Query: 134 IAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQS 170
           + GE ++VLPKCNH FHV+CIDTWL SHSSCPTCRQSLLE Q+
Sbjct: 123 VEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]

BLAST of Moc04g37750 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 167.5 bits (423), Expect = 1.0e-41
Identity = 85/154 (55.19%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 13  HRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRC 72
           HR LL+       ++G+     Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 73  SRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKI 132
               +   A GT    A  GLKK  L++ PVA YGS   ++I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 133 KVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLE 167
           +VLP CNH FH+ CIDTWL SHSSCP CR SL+E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of Moc04g37750 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.0e-37
Identity = 74/143 (51.75%), Postives = 98/143 (68.53%), Query Frame = 0


Query: 33  SSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETAGGT-STRLAAT 92
           S Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRCS     E  G     RL  T
Sbjct: 44  SPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNT 103

Query: 93  GLKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKIKVLPKCNHEFHVRCIDTWL 152
           G+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP C+H FHVRCID WL
Sbjct: 104 GVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWL 163

Query: 153 ASHSSCPTCRQSLLEQQSCSESA 175
           +SHSSCPTCR  L+  Q+C + A
Sbjct: 164 SSHSSCPTCRHCLI--QTCEKIA 184

[Close]

BLAST of Moc04g37750 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-31
Identity = 64/134 (47.76%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 36  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFE--TAGGTSTRLAAT-G 95
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR S RF         +STR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 96  LKKSALRQIPVAVYGSESGLEIRETDCPICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLA 155
           +KK ALR  PV  Y  E  L   + +C ICL DF++GE++++LPKCNH FHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 156 SHSSCPTCRQSLLE 167
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

The following BLAST results are available for this feature:

BLAST of Moc04g37750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134542.1	3.3e-103	100.00	RING-H2 finger protein ATL74 [Momordica charantia]	[more]
XP_038885444.1	4.7e-89	89.58	RING-H2 finger protein ATL74-like [Benincasa hispida]	[more]
XP_011656436.1	4.7e-89	88.08	RING-H2 finger protein ATL72 [Cucumis sativus] >KAE8646578.1 hypothetical protei...	[more]
KAA0052006.1	8.9e-88	88.42	RING-H2 finger protein ATL72 [Cucumis melo var. makuwa] >TYK04553.1 RING-H2 fing...	[more]
KAG7016045.1	1.2e-87	86.46	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]

BLAST of Moc04g37750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	8.2e-44	60.74	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	1.5e-42	57.06	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	1.4e-40	55.19	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	2.8e-36	51.75	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	8.7e-30	47.76	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Moc04g37750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZW4	1.6e-103	100.00	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]
A0A0A0KAH2	8.6e-89	88.02	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A5D3BXT6	4.3e-88	88.42	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1FF16	1.6e-87	85.94	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	2.1e-87	85.94	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]

BLAST of Moc04g37750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	5.8e-45	60.74	RING/U-box superfamily protein	[more]
AT5G05280.1	1.1e-43	57.06	RING/U-box superfamily protein	[more]
AT5G01880.1	1.0e-41	55.19	RING/U-box superfamily protein	[more]
AT1G49230.1	2.0e-37	51.75	RING/U-box superfamily protein	[more]
AT1G49220.1	6.2e-31	47.76	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 1.1E-7 score: 41.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 118..161 e-value: 4.7E-13 score: 49.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.238477
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 80..166 e-value: 5.4E-23 score: 82.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 13..177
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 13..177
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 119..161 e-value: 1.66588E-16 score: 68.0221
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g37750.1	Moc04g37750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane