Moc04g25930 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g25930
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr4: 18881148 .. 18881573 (+)
RNA-Seq ExpressionMoc04g25930
SyntenyMoc04g25930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTCATGTCAGCCATAAGTTATCCGGACTTGGCCAAATCCTATGTCTTGCAATCAGCGTGGACCTACAGCGAGGCCATTCAGCATGCTGGAAAGTATATGCACGCCGAAGATGTGCTCAAGGTCAAACAACTTTTGCACCAGACTACTACTTCAAAATTTGCCAGAGCCAAAGCCATAACTCGCAACCAAAGAAAAATTAACCGAACAAAGATCGTGAATAAGGGAAAGCAAATTACGACAATCGCCAGCAGCAAGATCGGACCATGTAGGTTAATGATCGGCGACTGCGGGAGTTTGATTATAAATACGCCGCTCAACATACCACTGGCAGAGATTTTAGTGAATATCGAAAATAGCGACTTAAACACCATGCTAGAGAGACTTGGAAAAATGAAACTAAGTCTGGACAAGATGAACTGA

mRNA sequence

ATGGCATTCATGTCAGCCATAAGTTATCCGGACTTGGCCAAATCCTATGTCTTGCAATCAGCGTGGACCTACAGCGAGGCCATTCAGCATGCTGGAAAGTATATGCACGCCGAAGATGTGCTCAAGGTCAAACAACTTTTGCACCAGACTACTACTTCAAAATTTGCCAGAGCCAAAGCCATAACTCGCAACCAAAGAAAAATTAACCGAACAAAGATCGTGAATAAGGGAAAGCAAATTACGACAATCGCCAGCAGCAAGATCGGACCATGTAGGTTAATGATCGGCGACTGCGGGAGTTTGATTATAAATACGCCGCTCAACATACCACTGGCAGAGATTTTAGTGAATATCGAAAATAGCGACTTAAACACCATGCTAGAGAGACTTGGAAAAATGAAACTAAGTCTGGACAAGATGAACTGA

Coding sequence (CDS)

ATGGCATTCATGTCAGCCATAAGTTATCCGGACTTGGCCAAATCCTATGTCTTGCAATCAGCGTGGACCTACAGCGAGGCCATTCAGCATGCTGGAAAGTATATGCACGCCGAAGATGTGCTCAAGGTCAAACAACTTTTGCACCAGACTACTACTTCAAAATTTGCCAGAGCCAAAGCCATAACTCGCAACCAAAGAAAAATTAACCGAACAAAGATCGTGAATAAGGGAAAGCAAATTACGACAATCGCCAGCAGCAAGATCGGACCATGTAGGTTAATGATCGGCGACTGCGGGAGTTTGATTATAAATACGCCGCTCAACATACCACTGGCAGAGATTTTAGTGAATATCGAAAATAGCGACTTAAACACCATGCTAGAGAGACTTGGAAAAATGAAACTAAGTCTGGACAAGATGAACTGA

Protein sequence

MAFMSAISYPDLAKSYVLQSAWTYSEAIQHAGKYMHAEDVLKVKQLLHQTTTSKFARAKAITRNQRKINRTKIVNKGKQITTIASSKIGPCRLMIGDCGSLIINTPLNIPLAEILVNIENSDLNTMLERLGKMKLSLDKMN
Homology
[Close]
BLAST of Moc04g25930 vs. NCBI nr
Match: XP_022155997.1 (uncharacterized protein LOC111022972 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-17
Identity = 64/143 (44.76%), Postives = 89/143 (62.24%), Query Frame = 0 

Query: 1   MAFMSAISYPDLAKSYVLQSAWTYSEAIQHAGKYMHAEDVLKVKQLLHQTTTSKFARAKA 60
           M FM A++  DL +SY LQ   TYSEAIQ A ++MHA+D+LK K L +QT TSK+ R+++
Sbjct: 44  MTFMVAVNNLDLIQSYALQPTHTYSEAIQRARQHMHAKDMLKAKHLQYQTMTSKYNRSRS 103

Query: 61  ----ITRNQRKINRTKIVNKGKQITTIASSKIGPCRLMIGDCGSLIINTPLNIPLAEILV 120
               + ++       K  N+  + +   +  +   RL   D       TPLN+P+AEIL 
Sbjct: 104 SDSYLKKDHSNKGDHKRANQDNRPSLPRTVTVPNRRLREFD-----QYTPLNVPIAEILA 163

Query: 121 NIENSDLNTMLERLGKMKLSLDK 140
           NIE+ DL+TMLE+ GKMKLSLDK
Sbjct: 164 NIESRDLHTMLEKPGKMKLSLDK 181

[Close]
BLAST of Moc04g25930 vs. NCBI nr
Match: XP_022151609.1 (uncharacterized protein LOC111019523 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 1   MAFMSAISYPDLAKSYVLQSAWTYSEAIQHAGKYMHAEDVLKVKQLLHQTTTSKFARAKA 60
           M FMS I+ P+L +SY LQ   TY+EAIQ A KYMHAEDVLK KQL HQTTTSK  RA+ 
Sbjct: 130 MTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG 189

Query: 61  ITRNQRK 68
            +   +K
Sbjct: 190 QSSQSKK 196

[Close]
BLAST of Moc04g25930 vs. ExPASy TrEMBL
Match: A0A6J1DQW1 (uncharacterized protein LOC111022972 OS=Momordica charantia OX=3673 GN=LOC111022972 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-17
Identity = 64/143 (44.76%), Postives = 89/143 (62.24%), Query Frame = 0 

Query: 1   MAFMSAISYPDLAKSYVLQSAWTYSEAIQHAGKYMHAEDVLKVKQLLHQTTTSKFARAKA 60
           M FM A++  DL +SY LQ   TYSEAIQ A ++MHA+D+LK K L +QT TSK+ R+++
Sbjct: 44  MTFMVAVNNLDLIQSYALQPTHTYSEAIQRARQHMHAKDMLKAKHLQYQTMTSKYNRSRS 103

Query: 61  ----ITRNQRKINRTKIVNKGKQITTIASSKIGPCRLMIGDCGSLIINTPLNIPLAEILV 120
               + ++       K  N+  + +   +  +   RL   D       TPLN+P+AEIL 
Sbjct: 104 SDSYLKKDHSNKGDHKRANQDNRPSLPRTVTVPNRRLREFD-----QYTPLNVPIAEILA 163

Query: 121 NIENSDLNTMLERLGKMKLSLDK 140
           NIE+ DL+TMLE+ GKMKLSLDK
Sbjct: 164 NIESRDLHTMLEKPGKMKLSLDK 181

[Close]
BLAST of Moc04g25930 vs. ExPASy TrEMBL
Match: A0A6J1DDJ7 (uncharacterized protein LOC111019523 OS=Momordica charantia OX=3673 GN=LOC111019523 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 1   MAFMSAISYPDLAKSYVLQSAWTYSEAIQHAGKYMHAEDVLKVKQLLHQTTTSKFARAKA 60
           M FMS I+ P+L +SY LQ   TY+EAIQ A KYMHAEDVLK KQL HQTTTSK  RA+ 
Sbjct: 130 MTFMSIINTPNLIQSYALQPKRTYTEAIQRARKYMHAEDVLKYKQLQHQTTTSKHVRARG 189

Query: 61  ITRNQRK 68
            +   +K
Sbjct: 190 QSSQSKK 196

The following BLAST results are available for this feature:
BLAST of Moc04g25930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155997.16.0e-1744.76uncharacterized protein LOC111022972 [Momordica charantia][more]
XP_022151609.12.4e-1061.19uncharacterized protein LOC111019523 [Momordica charantia][more]
BLAST of Moc04g25930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g25930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DQW12.9e-1744.76uncharacterized protein LOC111022972 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DDJ71.2e-1061.19uncharacterized protein LOC111019523 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
BLAST of Moc04g25930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g25930.1Moc04g25930.1mRNA