Moc04g10400 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g10400
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr4: 7694741 .. 7694965 (+)
RNA-Seq ExpressionMoc04g10400
SyntenyMoc04g10400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTAGGACATCTGGTCTTAAGGAGGGTCCAAACCCATGTGGGTGCCCTTGATCCGACCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATTTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCAGAGCACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTAGGACATCTGGTCTTAAGGAGGGTCCAAACCCATGTGGGTGCCCTTGATCCGACCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATTTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCAGAGCACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTAGGACATCTGGTCTTAAGGAGGGTCCAAACCCATGTGGGTGCCCTTGATCCGACCTGGGAGGGCCCGTTTGAGGTCAAGGGCATAGTCCGACCTGGGACGTACGTATTGGCCGATTTGAAAGGAGACGTCCTCGCGCACCCGTGGAACGCAGAGCACCTGAAGCGTTATTATCCTTGA

Protein sequence

MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP
Homology
[Close]
BLAST of Moc04g10400 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 6.7e-28
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVL 60
           MARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FEVKGIVRPGTY+LADL+  VL
Sbjct: 556 MARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVL 615

Query: 61  AHPWNAEHLKRYYP 75
           AHPWNAEHLKRYYP
Sbjct: 616 AHPWNAEHLKRYYP 629

[Close]
BLAST of Moc04g10400 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 110.2 bits (274), Expect = 8.0e-21
Identity = 47/63 (74.60%), Postives = 58/63 (92.06%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVL 60
           MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFEVKGIVRPGTY+LADL+G +L
Sbjct: 288 MARHYNSRVRSRSFQIGYLVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLL 347

Query: 61  AHP 64
           +HP
Sbjct: 348 SHP 350

[Close]
BLAST of Moc04g10400 vs. NCBI nr
Match: XP_022144032.1 (uncharacterized protein LOC111013824 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 20  VLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP 75
           V +++Q+HVG LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Sbjct: 414 VEQKIQSHVGTLDPSWEGPFEVKGIIRFGTYMLADLEGNVLAHPWNAEHLKRYYP 468

[Close]
BLAST of Moc04g10400 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVL 60
           MAR+YNARV+ RTF+   LVL++V  HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L
Sbjct: 772 MARYYNARVKVRTFKPSDLVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQL 831

Query: 61  AHPWNAEHLKRYY 74
            HPWNAEHL+ YY
Sbjct: 832 PHPWNAEHLRVYY 844

[Close]
BLAST of Moc04g10400 vs. NCBI nr
Match: GFZ00937.1 (hypothetical protein Acr_14g0005720 [Actinidia rufa])

HSP 1 Score: 97.4 bits (241), Expect = 5.3e-17
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRV-----QTHVGALDPTWEGPFEVKGIVRPGTYVLADL 60
           +A++YN RVR R+F  G LVLR+V     + + G L PTWEGP++V  + RPGTY L DL
Sbjct: 29  VAKYYNQRVRHRSFLPGDLVLRKVTLSTKEPNAGKLGPTWEGPYKVIKVSRPGTYWLEDL 88

Query: 61  KGDVLAHPWNAEHLKRYY 74
           +G  L+HPWNAEHLK+YY
Sbjct: 89  EGKALSHPWNAEHLKKYY 106

[Close]
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.3e-28
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVL 60
           MARHYN R++PR+FQVGHLV  ++Q+HVG LDP+WE  FEVKGIVRPGTY+LADL+  VL
Sbjct: 556 MARHYNTRIQPRSFQVGHLVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVL 615

Query: 61  AHPWNAEHLKRYYP 75
           AHPWNAEHLKRYYP
Sbjct: 616 AHPWNAEHLKRYYP 629

[Close]
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 47/63 (74.60%), Postives = 58/63 (92.06%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVL 60
           MARHYN+RVR R+FQ+G+LVLR+VQ HV  L+P+WEGPFEVKGIVRPGTY+LADL+G +L
Sbjct: 288 MARHYNSRVRSRSFQIGYLVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLL 347

Query: 61  AHP 64
           +HP
Sbjct: 348 SHP 350

[Close]
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match: A0A6J1CSJ1 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.5e-20
Identity = 43/55 (78.18%), Postives = 52/55 (94.55%), Query Frame = 0 

Query: 20  VLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVLAHPWNAEHLKRYYP 75
           V +++Q+HVG LDP+WEGPFEVKGI+R GTY+LADL+G+VLAHPWNAEHLKRYYP
Sbjct: 414 VEQKIQSHVGTLDPSWEGPFEVKGIIRFGTYMLADLEGNVLAHPWNAEHLKRYYP 468

[Close]
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-19
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 0 

Query: 1   MARHYNARVRPRTFQVGHLVLRRVQTHVGALDPTWEGPFEVKGIVRPGTYVLADLKGDVL 60
           MAR+YNARV+ RTF+   LVL++V  HVGAL+P WEGP+ V  I+RP  Y+L+DL G  L
Sbjct: 772 MARYYNARVKVRTFKPSDLVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQL 831

Query: 61  AHPWNAEHLKRYY 74
            HPWNAEHL+ YY
Sbjct: 832 PHPWNAEHLRVYY 844

[Close]
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match: A0A2N9FYD5 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19666 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18
Identity = 45/79 (56.96%), Postives = 55/79 (69.62%), Query Frame = 0 

Query: 1    MARHYNARVRPRTFQVGHLVLRRV-----QTHVGALDPTWEGPFEVKGIVRPGTYVLADL 60
            MARHYN+RV+PR   +G LVLR+V         G L P WEGP++V  + RPGTY L D+
Sbjct: 1443 MARHYNSRVKPRQLSIGDLVLRKVTLATRNPSEGKLGPNWEGPYKVVEVRRPGTYHLEDM 1502

Query: 61   KGDVLAHPWNAEHLKRYYP 75
             G  L+HPWNAEHL+RYYP
Sbjct: 1503 NGRRLSHPWNAEHLRRYYP 1521

The following BLAST results are available for this feature:
BLAST of Moc04g10400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159003.16.7e-2877.03uncharacterized protein LOC111025448 [Momordica charantia][more]
XP_022156070.18.0e-2174.60uncharacterized protein K02A2.6-like [Momordica charantia][more]
XP_022144032.12.0e-1978.18uncharacterized protein LOC111013824 [Momordica charantia][more]
XP_022156986.14.4e-1961.64uncharacterized protein LOC111023816 [Momordica charantia][more]
GFZ00937.15.3e-1756.41hypothetical protein Acr_14g0005720 [Actinidia rufa][more]
BLAST of Moc04g10400 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXL93.3e-2877.03uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DP993.9e-2174.60uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CSJ19.5e-2078.18Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013824 PE=4 SV=1[more]
A0A6J1DWM22.1e-1961.64Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1[more]
A0A2N9FYD52.3e-1856.96Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19666 PE=4 SV=1[more]
BLAST of Moc04g10400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g10400.1Moc04g10400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity