Moc04g09910 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g09910
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr4: 7353905 .. 7354834 (+)
RNA-Seq Expression	Moc04g09910
Synteny	Moc04g09910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATCCCGGACAAATCCAGGTTCAATCCCGGATCGAAAGATGGTTCGGGAGTGAACCGGGATACATCCCGGACCAATCTCGAAGCACTGTGGTCCGGGATATGTCTCGGACCAAGACTGGTCCGAGACGGTCCGGGATGACATGTATTTTGTTATTTTTTTACCACTTTTTTTGGACGATATTCTTATCTCACTTGATTTTATCTATTTGCAGGATGCCTCGTGTTTTCATAACATTTGGTGGAGAATGGAATGATAGTGAAAAAGATTACGTTGGTGGTCGCACGAGAGGATTGACAGTGGATAGTACAACCACATACAGAGAATTTCTAGGTCACGTGTATAGATTGAGTAATATAAACCCCCTTCAATTCGATATTATAATTAGACGCATATATCATTTTAAAACTAAAGTTTGTGTAATGGAGATAACTGATGACGATGACCTGAATTTTTTTTTAATTGGTGAGGATTTATCTGAATTGCTTATATACCTATCTACTACGCCAAAGCAGACACATGAGAATGAAACGTACATGCCTTCTTTCCCATATCATGTAGGCCAAAACGTATCCTCGAGTTGTATGCCCACAGCTTGTATTCCCCCATTATAGAGACCCACACATTCGATACATTCATTTCCTTCCTCATCATCGAACCCCTCTTCTTCCCAACAACCACACCCGTATTACGGGCATTTAGGTCATGATATAGCGGGTTTAACACCATTGGAATCAGATGTTGTTCTATGTAACCTAGGAGATGACAGGGTATGTGATTGGAATGTGCCGGGATTATGGAATGATAATCAAGATGAAAGTGATGAATCATATGACCCGTTGGGAGAGTCAGAAGAAGGAGACTATGAAGCAGAATTCTGTCTTCCATCCCGGACCTTATCCCGGACCATTTCGCCTTCGGGATGA

mRNA sequence

ATGTTCAATCCCGGACAAATCCAGGTTCAATCCCGGATCGAAAGATGGTTCGGGAGTGAACCGGGATACATCCCGGACCAATCTCGAAGCACTGTGGTCCGGGATATGTCTCGGACCAAGACTGGTCCGAGACGGATGCCTCGTGTTTTCATAACATTTGGTGGAGAATGGAATGATAGTGAAAAAGATTACGTTGGTGGTCGCACGAGAGGATTGACAGTGGATAGTACAACCACATACAGAGAATTTCTAGGTCATGATATAGCGGGTTTAACACCATTGGAATCAGATGTTGTTCTATGTAACCTAGGAGATGACAGGGTATGTGATTGGAATGTGCCGGGATTATGGAATGATAATCAAGATGAAAGTGATGAATCATATGACCCGTTGGGAGAGTCAGAAGAAGGAGACTATGAAGCAGAATTCTGTCTTCCATCCCGGACCTTATCCCGGACCATTTCGCCTTCGGGATGA

Coding sequence (CDS)

ATGTTCAATCCCGGACAAATCCAGGTTCAATCCCGGATCGAAAGATGGTTCGGGAGTGAACCGGGATACATCCCGGACCAATCTCGAAGCACTGTGGTCCGGGATATGTCTCGGACCAAGACTGGTCCGAGACGGATGCCTCGTGTTTTCATAACATTTGGTGGAGAATGGAATGATAGTGAAAAAGATTACGTTGGTGGTCGCACGAGAGGATTGACAGTGGATAGTACAACCACATACAGAGAATTTCTAGGTCATGATATAGCGGGTTTAACACCATTGGAATCAGATGTTGTTCTATGTAACCTAGGAGATGACAGGGTATGTGATTGGAATGTGCCGGGATTATGGAATGATAATCAAGATGAAAGTGATGAATCATATGACCCGTTGGGAGAGTCAGAAGAAGGAGACTATGAAGCAGAATTCTGTCTTCCATCCCGGACCTTATCCCGGACCATTTCGCCTTCGGGATGA

Protein sequence

MFNPGQIQVQSRIERWFGSEPGYIPDQSRSTVVRDMSRTKTGPRRMPRVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREFLGHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYDPLGESEEGDYEAEFCLPSRTLSRTISPSG

Homology

[Close]

BLAST of Moc04g09910 vs. NCBI nr
Match: XP_022154947.1 (uncharacterized protein LOC111022090 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 6.6e-41
Identity = 93/145 (64.14%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 46  MPRVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREF---------------------- 105
           M RVFITFGGEW DSEKDYV GRT+GLTVDSTTTYREF                      
Sbjct: 1   MSRVFITFGGEWKDSEKDYVDGRTKGLTVDSTTTYREFQGQNVPSSCMPTTCIPQFQRPT 60

Query: 106 -------------------------LGHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWN 144
                                    LGHDIAGLTPLESDVV CNLGDDRVCDWNVPGLWN
Sbjct: 61  DPIPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWN 120

[Close]

BLAST of Moc04g09910 vs. NCBI nr
Match: XP_022155970.1 (uncharacterized protein LOC111022954 [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-35
Identity = 84/134 (62.69%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 48  RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTT---------------------------- 107
           RVFITFGGEWNDSEKDYVGGR RGLTVDS                               
Sbjct: 37  RVFITFGGEWNDSEKDYVGGRMRGLTVDSQNVSSSCMPIACIPSFQRPTDPIPSFPSSSS 96

Query: 108 ----------YREFLGHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYD 144
                     Y   LGHDIAGLTPLESDVV CNLGDDRVC WN+PGLWNDNQDESDESYD
Sbjct: 97  NPSSSQQPHLYYGHLGHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYD 156

[Close]

BLAST of Moc04g09910 vs. NCBI nr
Match: XP_022157017.1 (uncharacterized protein LOC111023843 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 4.6e-18
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 85  GHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYDPLGESEEGDYEAEF 144
           GHD+ GLTPL SDVV CNLGDDRVCDW+VPG+WNDN+DES ESYDPL  SEEG  +AE+
Sbjct: 8   GHDVEGLTPLGSDVVPCNLGDDRVCDWDVPGVWNDNEDESGESYDPLAXSEEGHSQAEY 66

[Close]

BLAST of Moc04g09910 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 5.0e-12
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 95   ESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYDPLGESEEGDYEAEF 144
            + +VV CNLGDDRVCDW+VPG+WNDN+DES ESYDPL ES+EG  +AE+
Sbjct: 1130 QQNVVPCNLGDDRVCDWDVPGVWNDNEDESGESYDPLAESKEGHSQAEY 1178

[Close]

BLAST of Moc04g09910 vs. ExPASy TrEMBL
Match: A0A6J1DN26 (uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022090 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 3.2e-41
Identity = 93/145 (64.14%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 46  MPRVFITFGGEWNDSEKDYVGGRTRGLTVDSTTTYREF---------------------- 105
           M RVFITFGGEW DSEKDYV GRT+GLTVDSTTTYREF                      
Sbjct: 1   MSRVFITFGGEWKDSEKDYVDGRTKGLTVDSTTTYREFQGQNVPSSCMPTTCIPQFQRPT 60

Query: 106 -------------------------LGHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWN 144
                                    LGHDIAGLTPLESDVV CNLGDDRVCDWNVPGLWN
Sbjct: 61  DPIPSFPSSSSNPSSSQQPHPYYRHLGHDIAGLTPLESDVVPCNLGDDRVCDWNVPGLWN 120

[Close]

BLAST of Moc04g09910 vs. ExPASy TrEMBL
Match: A0A6J1DP00 (uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022954 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.9e-36
Identity = 84/134 (62.69%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 48  RVFITFGGEWNDSEKDYVGGRTRGLTVDSTTT---------------------------- 107
           RVFITFGGEWNDSEKDYVGGR RGLTVDS                               
Sbjct: 37  RVFITFGGEWNDSEKDYVGGRMRGLTVDSQNVSSSCMPIACIPSFQRPTDPIPSFPSSSS 96

Query: 108 ----------YREFLGHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYD 144
                     Y   LGHDIAGLTPLESDVV CNLGDDRVC WN+PGLWNDNQDESDESYD
Sbjct: 97  NPSSSQQPHLYYGHLGHDIAGLTPLESDVVPCNLGDDRVCVWNMPGLWNDNQDESDESYD 156

[Close]

BLAST of Moc04g09910 vs. ExPASy TrEMBL
Match: A0A6J1DTG5 (uncharacterized protein LOC111023843 OS=Momordica charantia OX=3673 GN=LOC111023843 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.2e-18
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 85  GHDIAGLTPLESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYDPLGESEEGDYEAEF 144
           GHD+ GLTPL SDVV CNLGDDRVCDW+VPG+WNDN+DES ESYDPL  SEEG  +AE+
Sbjct: 8   GHDVEGLTPLGSDVVPCNLGDDRVCDWDVPGVWNDNEDESGESYDPLAXSEEGHSQAEY 66

[Close]

BLAST of Moc04g09910 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.4e-12
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 95   ESDVVLCNLGDDRVCDWNVPGLWNDNQDESDESYDPLGESEEGDYEAEF 144
            + +VV CNLGDDRVCDW+VPG+WNDN+DES ESYDPL ES+EG  +AE+
Sbjct: 1130 QQNVVPCNLGDDRVCDWDVPGVWNDNEDESGESYDPLAESKEGHSQAEY 1178

The following BLAST results are available for this feature:

BLAST of Moc04g09910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154947.1	6.6e-41	64.14	uncharacterized protein LOC111022090 [Momordica charantia]	[more]
XP_022155970.1	1.4e-35	62.69	uncharacterized protein LOC111022954 [Momordica charantia]	[more]
XP_022157017.1	4.6e-18	76.27	uncharacterized protein LOC111023843 [Momordica charantia]	[more]
XP_022156328.1	5.0e-12	71.43	LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]	[more]

BLAST of Moc04g09910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g09910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DN26	3.2e-41	64.14	uncharacterized protein LOC111022090 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DP00	6.9e-36	62.69	uncharacterized protein LOC111022954 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DTG5	2.2e-18	76.27	uncharacterized protein LOC111023843 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DQB9	2.4e-12	71.43	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1	[more]

BLAST of Moc04g09910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..139
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g09910.1	Moc04g09910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding