Moc04g09440 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g09440
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 6956555 .. 6956833 (-)
RNA-Seq Expression	Moc04g09440
Synteny	Moc04g09440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAACTTAGGAGATAGACCCACTAATGGAGATGTAGAAGGGATGGAACCACAAGAACAACTCCTTGCGAAAGTCATGCAAAATGTGGAGACCATGATCAATGAGAGGTTAGATAGGATGGAGCAAAGACTTCAAGCTAGGGATAGACCTCAAGGAAGAAGGCGGCCTGAAGAAGTTTTGGAAGAGGAAGAAGACTTAGAGCAAGAAGATGAAGATGAGGAGCCGGAGGTTGCAGTACCTAAAAGAGGAGAACGTCGAGGAGTGAAAGGAAAATGA

mRNA sequence

ATGTCAAACTTAGGAGATAGACCCACTAATGGAGATGTAGAAGGGATGGAACCACAAGAACAACTCCTTGCGAAAGTCATGCAAAATGTGGAGACCATGATCAATGAGAGGTTAGATAGGATGGAGCAAAGACTTCAAGCTAGGGATAGACCTCAAGGAAGAAGGCGGCCTGAAGAAGTTTTGGAAGAGGAAGAAGACTTAGAGCAAGAAGATGAAGATGAGGAGCCGGAGGTTGCAGTACCTAAAAGAGGAGAACGTCGAGGAGTGAAAGGAAAATGA

Coding sequence (CDS)

ATGTCAAACTTAGGAGATAGACCCACTAATGGAGATGTAGAAGGGATGGAACCACAAGAACAACTCCTTGCGAAAGTCATGCAAAATGTGGAGACCATGATCAATGAGAGGTTAGATAGGATGGAGCAAAGACTTCAAGCTAGGGATAGACCTCAAGGAAGAAGGCGGCCTGAAGAAGTTTTGGAAGAGGAAGAAGACTTAGAGCAAGAAGATGAAGATGAGGAGCCGGAGGTTGCAGTACCTAAAAGAGGAGAACGTCGAGGAGTGAAAGGAAAATGA

Protein sequence

MSNLGDRPTNGDVEGMEPQEQLLAKVMQNVETMINERLDRMEQRLQARDRPQGRRRPEEVLEEEEDLEQEDEDEEPEVAVPKRGERRGVKGK

Homology

[Close]

BLAST of Moc04g09440 vs. NCBI nr
Match: XP_022159097.1 (uncharacterized protein LOC111025539 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-22
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MSNLGDRPTNGDVEGMEPQEQLLAKVMQNVETMINERLDRMEQRLQARDRPQGRRRPEEV 60
          MSNLGDRPTN DVEGMEPQEQLLA+VMQNVETMINE                 RR+PEEV
Sbjct: 1  MSNLGDRPTNRDVEGMEPQEQLLARVMQNVETMINE-----------------RRQPEEV 60

Query: 61 LEEEEDLEQEDEDEEPEVAVPKRGERRGVKGK 93
          LEEEEDL QEDEDEEPEVAVP+RGERRGV+G+
Sbjct: 61 LEEEEDLGQEDEDEEPEVAVPRRGERRGVRGR 75

[Close]

BLAST of Moc04g09440 vs. NCBI nr
Match: XP_022135946.1 (uncharacterized protein LOC111007780 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MSNLGDRPTNGDVEGMEPQEQLLAKVMQNVETMINERLDRMEQRLQARDRPQGRRRPEEV 60
          MSNLGDRP N DVEGMEPQEQLLA+V QNVETMINERLDRMEQ LQARD PQGRRRP+EV
Sbjct: 1  MSNLGDRPNNEDVEGMEPQEQLLARVTQNVETMINERLDRMEQGLQARDIPQGRRRPKEV 60

Query: 61 LEEEEDLEQEDEDE 75
          LEEEE+L +    E
Sbjct: 61 LEEEENLGRRRRQE 74

[Close]

BLAST of Moc04g09440 vs. ExPASy TrEMBL
Match: A0A6J1DYV9 (uncharacterized protein LOC111025539 OS=Momordica charantia OX=3673 GN=LOC111025539 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 8.7e-23
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MSNLGDRPTNGDVEGMEPQEQLLAKVMQNVETMINERLDRMEQRLQARDRPQGRRRPEEV 60
          MSNLGDRPTN DVEGMEPQEQLLA+VMQNVETMINE                 RR+PEEV
Sbjct: 1  MSNLGDRPTNRDVEGMEPQEQLLARVMQNVETMINE-----------------RRQPEEV 60

Query: 61 LEEEEDLEQEDEDEEPEVAVPKRGERRGVKGK 93
          LEEEEDL QEDEDEEPEVAVP+RGERRGV+G+
Sbjct: 61 LEEEEDLGQEDEDEEPEVAVPRRGERRGVRGR 75

[Close]

BLAST of Moc04g09440 vs. ExPASy TrEMBL
Match: A0A6J1C253 (uncharacterized protein LOC111007780 OS=Momordica charantia OX=3673 GN=LOC111007780 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MSNLGDRPTNGDVEGMEPQEQLLAKVMQNVETMINERLDRMEQRLQARDRPQGRRRPEEV 60
          MSNLGDRP N DVEGMEPQEQLLA+V QNVETMINERLDRMEQ LQARD PQGRRRP+EV
Sbjct: 1  MSNLGDRPNNEDVEGMEPQEQLLARVTQNVETMINERLDRMEQGLQARDIPQGRRRPKEV 60

Query: 61 LEEEEDLEQEDEDE 75
          LEEEE+L +    E
Sbjct: 61 LEEEENLGRRRRQE 74

The following BLAST results are available for this feature:

BLAST of Moc04g09440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159097.1	1.8e-22	73.91	uncharacterized protein LOC111025539 [Momordica charantia]	[more]
XP_022135946.1	3.2e-19	81.08	uncharacterized protein LOC111007780 [Momordica charantia]	[more]

BLAST of Moc04g09440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g09440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYV9	8.7e-23	73.91	uncharacterized protein LOC111025539 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1C253	1.5e-19	81.08	uncharacterized protein LOC111007780 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Moc04g09440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g09440.1	Moc04g09440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding