Moc04g09310 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g09310
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 6870163 .. 6870429 (-)
RNA-Seq Expression	Moc04g09310
Synteny	Moc04g09310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTTTCGAGAAGTATCGTTGTTCTTGTGTTGGCGCTGCTGATTTCTTCTGCTGCGGCAGCGCATCATTCACACACAATTAAGCCGCCGGCTCCTGCGCCGTCTCCGGCAGCCGTGCAGCCTCCGTCGTCTTTGCCGCCGTCGATAGCTGGTCCTCCTGCTGAAGCGCCCGGACCGGCTGCAAGCGGCGCCGTTTTGGGTAGAGGATTTAGTGTTGCTGGATCTATGGCTTTTGGGATTTTCGCTGCTGCTTTGATTGTTTAA

mRNA sequence

ATGGCCGTTTCGAGAAGTATCGTTGTTCTTGTGTTGGCGCTGCTGATTTCTTCTGCTGCGGCAGCGCATCATTCACACACAATTAAGCCGCCGGCTCCTGCGCCGTCTCCGGCAGCCGTGCAGCCTCCGTCGTCTTTGCCGCCGTCGATAGCTGGTCCTCCTGCTGAAGCGCCCGGACCGGCTGCAAGCGGCGCCGTTTTGGGTAGAGGATTTAGTGTTGCTGGATCTATGGCTTTTGGGATTTTCGCTGCTGCTTTGATTGTTTAA

Coding sequence (CDS)

ATGGCCGTTTCGAGAAGTATCGTTGTTCTTGTGTTGGCGCTGCTGATTTCTTCTGCTGCGGCAGCGCATCATTCACACACAATTAAGCCGCCGGCTCCTGCGCCGTCTCCGGCAGCCGTGCAGCCTCCGTCGTCTTTGCCGCCGTCGATAGCTGGTCCTCCTGCTGAAGCGCCCGGACCGGCTGCAAGCGGCGCCGTTTTGGGTAGAGGATTTAGTGTTGCTGGATCTATGGCTTTTGGGATTTTCGCTGCTGCTTTGATTGTTTAA

Protein sequence

MAVSRSIVVLVLALLISSAAAAHHSHTIKPPAPAPSPAAVQPPSSLPPSIAGPPAEAPGPAASGAVLGRGFSVAGSMAFGIFAAALIV

Homology

[Close]

BLAST of Moc04g09310 vs. NCBI nr
Match: KGN43805.2 (hypothetical protein Csa_017194, partial [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 8.6e-06
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 7   IVVLVLALLISSAAAAHHSHTIKPPAPAPSPAAVQPPSSLPPSIAGPPAEAPGPAASGAV 66
           +++LVLAL+ SSA A HH    K PAPAPSPA V+ PS  P SI+G P EAP PAA+GA 
Sbjct: 97  VLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPAANGAG 156

Query: 67  LGRGFSVAGSMAFGI---FAAALIV 89
           L     V+GSMA  +   FAAAL V
Sbjct: 157 L-----VSGSMAVSVGIFFAAALFV 176

[Close]

BLAST of Moc04g09310 vs. ExPASy TrEMBL
Match: A0A0A0K427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-06
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 7  IVVLVLALLISSAAAAHHSHTIKPPAPAPSPAAVQPPSSLPPSIAGPPAEAPGPAASGAV 66
          +++LVLAL+ SSA A HH    K PAPAPSPA V+ PS  P SI+G P EAP PAA+GA 
Sbjct: 8  VLLLVLALVASSATAGHHHSHPKSPAPAPSPAVVEAPSVPPSSISGTPVEAPAPAANGAG 67

Query: 67 LGRGFSVAGSMAFGI---FAAALIV 89
          L     V+GSMA  +   FAAAL V
Sbjct: 68 L-----VSGSMAVSVGIFFAAALFV 87

The following BLAST results are available for this feature:

BLAST of Moc04g09310 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43805.2	8.6e-06	56.47	hypothetical protein Csa_017194, partial [Cucumis sativus]	[more]

BLAST of Moc04g09310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g09310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K427	4.2e-06	56.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064050 PE=4 SV=1	[more]

BLAST of Moc04g09310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g09310.1	Moc04g09310.1	mRNA