Moc04g09110 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g09110
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionzf-RVT domain-containing protein
Locationchr4: 6711213 .. 6712112 (-)
RNA-Seq ExpressionMoc04g09110
SyntenyMoc04g09110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGATTGGGACAGGAATGCGGTTTCAAACTGCTTTCATGTTGAAGATGTGCAATCTATTCTTAATAGTCCTCTTTCTAATGAAGAATGTTGAGGATAAGCTTATTTGGCACGACAGCAAAGATGATTTTTACACAGTGCGAAGTGGTTACGGGCTGGCAAGTGATCTTCTTCACCGGGATAGTAATTCGAATGTGCAGGAGTTGTCTAAGTGGTGGAAAGTCTTTGTGAATGCAAATGTGCCCAATAAAATTAAAATTTTGGTTGGAAAGCTTTTAAGGGAGTTTCTCCCTTCGGGGTCTACTCTTGTTAAGAAGGGGATGGAGGTGGATCCTCGTTGTATCAGGTGTAATCTGTTTGATGAAAGCCCGATACATGCTATATGGTTTGGTAAAAAGGATAGGAAGTTCTGGGAGGCCTCGCCTTTCCTCTCCATCTCTCCATAAATTGGCCTCATTCTATGAGGTCGGTGGCTGACTTACTATGGTGGTTTGGGGAATATTCCTAATGATCTGTTTGAAAAGTTTCTGGTTATGTGTTGGGCAGTTTTGGTCGTGGCAAAATAAAATAAATTTTGTTGATCCTAACGGTTGTGTTGGATGCAGGACGATCTTTGGGATTGGTCTATCTCCTATATTACTCAATTCTAAGCAGCAAATAAAATCATAGGAGAGGTGGAGATGCCGAGAGTACCTGGTGCGAGACCGAATTCTCGAAAGCATTAGTCTCCCCCAGTTGATGACAATCTGAAAATTAATACTGACGTTGCAATCAGACTCGATGAAAATCGTATGGGTTTTGGTGCTATGATCCGTAATTCTAAGGGAGAAATTATGCTTACTCCTGCGAAAGAAGTTGGGTGTGTATGCGATCCAGCAATAGAAGACGTCGGCGATTAG

mRNA sequence

ATGGTGATTGGGACAGGAATGCGGTTTCAAACTGCTTTCATGTTGAAGATGTGCAATCTATTCTTAATAGTCCTCTTTCTAATGAAGAATGTTGAGGATAAGCTTATTTGGCACGACAGCAAAGATGATTTTTACACAGTGCGAAGTGGTTACGGGCTGGCAAGTGATCTTCTTCACCGGGATAGTAATTCGAATGTGCAGGAGTTGTCTAAGTGGTGGAAAGTCTTTGTGAATGCAAATGTGCCCAATAAAATTAAAATTTTGGTTGGAAAGCTTTTAAGGGAGTTTCTCCCTTCGGGGTCTACTCTTGTTAAGAAGGGGATGGAGGTGGATCCTCGTTGTATCAGACTCGATGAAAATCGTATGGGTTTTGGTGCTATGATCCGTAATTCTAAGGGAGAAATTATGCTTACTCCTGCGAAAGAAGTTGGGTGTGTATGCGATCCAGCAATAGAAGACGTCGGCGATTAG

Coding sequence (CDS)

ATGGTGATTGGGACAGGAATGCGGTTTCAAACTGCTTTCATGTTGAAGATGTGCAATCTATTCTTAATAGTCCTCTTTCTAATGAAGAATGTTGAGGATAAGCTTATTTGGCACGACAGCAAAGATGATTTTTACACAGTGCGAAGTGGTTACGGGCTGGCAAGTGATCTTCTTCACCGGGATAGTAATTCGAATGTGCAGGAGTTGTCTAAGTGGTGGAAAGTCTTTGTGAATGCAAATGTGCCCAATAAAATTAAAATTTTGGTTGGAAAGCTTTTAAGGGAGTTTCTCCCTTCGGGGTCTACTCTTGTTAAGAAGGGGATGGAGGTGGATCCTCGTTGTATCAGACTCGATGAAAATCGTATGGGTTTTGGTGCTATGATCCGTAATTCTAAGGGAGAAATTATGCTTACTCCTGCGAAAGAAGTTGGGTGTGTATGCGATCCAGCAATAGAAGACGTCGGCGATTAG

Protein sequence

MVIGTGMRFQTAFMLKMCNLFLIVLFLMKNVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILVGKLLREFLPSGSTLVKKGMEVDPRCIRLDENRMGFGAMIRNSKGEIMLTPAKEVGCVCDPAIEDVGD
Homology
BLAST of Moc04g09110 vs. NCBI nr
Match: XP_030487384.1 (uncharacterized protein LOC115704310 [Cannabis sativa])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 34/87 (39.08%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 30  NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
           ++EDK++WH SKD  Y+VRSGY +A+ L  RD  S+ +   KWWK+     +P K+K  V
Sbjct: 650 DIEDKILWHYSKDGEYSVRSGYRMAAALKVRDVQSDTEATEKWWKLLWKLKIPPKVKHFV 709

Query: 90  GKLLREFLPSGSTLVKKGMEVDPRCIR 117
            K+   ++P+ + L  + ++V+P C R
Sbjct: 710 WKMAHSWIPTNAVLAHRNIQVEPYCSR 736

BLAST of Moc04g09110 vs. NCBI nr
Match: KAF4359788.1 (hypothetical protein F8388_008350 [Cannabis sativa] >KAF4383970.1 hypothetical protein G4B88_016403 [Cannabis sativa])

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 30  NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
           ++EDK++WH SK+  Y+V +GY LASDLL  +S S+   LS WW       +P K+K  V
Sbjct: 48  DLEDKIMWHYSKNGEYSVSNGYRLASDLLEEESQSDNSRLSGWWNGLWKKKIPPKVKHFV 107

Query: 90  GKLLREFLPSGSTLVKKGMEVDPRCIRLDE 120
            K+   ++P+  +L  +GM +D  C R  E
Sbjct: 108 WKICHSWIPTKVSLAHRGMAIDKTCFRCSE 137

BLAST of Moc04g09110 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-10
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 0

Query: 33  DKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILVGKL 92
           D L+WH + +  YTV+SGY LAS L  +  +S+    SKWWK F +  +P KIKI   ++
Sbjct: 765 DCLVWHHTNNGIYTVQSGYHLASSLAEQPHSSSSSSESKWWKSFWSLQLPEKIKIFAWRV 824

Query: 93  LREFLPSGSTLVKKGMEVDPRC 115
           + + LP  ++LVK+ +  D  C
Sbjct: 825 IHDALPVATSLVKRKVITDAAC 846

BLAST of Moc04g09110 vs. NCBI nr
Match: KAF4391669.1 (hypothetical protein F8388_005434 [Cannabis sativa] >KAF4400672.1 hypothetical protein G4B88_023080 [Cannabis sativa])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-09
Identity = 33/89 (37.08%), Postives = 57/89 (64.04%), Query Frame = 0

Query: 32  EDKLIWHDSKDDFYTVRSGYGLASDL-LHRDSNSNVQELSKWWKVFVNANVPNKIKILVG 91
           ED LIW  +KD  Y V+SGY +A ++ L    +SN+ +   WWK++ + N+P ++K+   
Sbjct: 433 EDMLIWPFTKDGNYIVKSGYRVAREINLTPTRSSNMDQTHAWWKMWWSLNLPPRMKLFDW 492

Query: 92  KLLREFLPSGSTLVKKGMEVDPRCIRLDE 120
           K+ R +LP+ + LV +GM+++P C   D+
Sbjct: 493 KMCRNWLPAKTNLVHRGMKINPICTNCDK 521

BLAST of Moc04g09110 vs. NCBI nr
Match: XP_030505314.1 (uncharacterized protein LOC115720302 [Cannabis sativa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 36/85 (42.35%), Postives = 46/85 (54.12%), Query Frame = 0

Query: 32   EDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILVGK 91
            EDKLIWH S    Y+V+SGY LAS L    S S+ Q  + WW  F    +P KIKI   +
Sbjct: 1010 EDKLIWHHSASGIYSVKSGYHLASSLRESRSPSHSQSQTSWWNRFWKLKLPRKIKIFAWR 1069

Query: 92   LLREFLPSGSTLVKKGMEVDPRCIR 117
             L   LP  + L  + +  DP+C R
Sbjct: 1070 TLHNALPLAANLHHRHIIDDPKCSR 1094

BLAST of Moc04g09110 vs. ExPASy TrEMBL
Match: A0A803P3X4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 30   NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
            ++EDK++WH SKD  Y+VRSGY +A+ L  RD  S+ +   KWW++     +P K+K  V
Sbjct: 1421 DIEDKVLWHYSKDGEYSVRSGYRMAAALQVRDVQSDTEVTEKWWRLLWKLKIPPKVKHFV 1480

Query: 90   GKLLREFLPSGSTLVKKGMEVDPRCIR 117
             KL   +LP+ + L ++ + V+P C R
Sbjct: 1481 WKLAHSWLPTNAVLARRNIPVEPYCNR 1507

BLAST of Moc04g09110 vs. ExPASy TrEMBL
Match: A0A7J6GNP7 (zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_008350 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 30  NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
           ++EDK++WH SK+  Y+V +GY LASDLL  +S S+   LS WW       +P K+K  V
Sbjct: 48  DLEDKIMWHYSKNGEYSVSNGYRLASDLLEEESQSDNSRLSGWWNGLWKKKIPPKVKHFV 107

Query: 90  GKLLREFLPSGSTLVKKGMEVDPRCIRLDE 120
            K+   ++P+  +L  +GM +D  C R  E
Sbjct: 108 WKICHSWIPTKVSLAHRGMAIDKTCFRCSE 137

BLAST of Moc04g09110 vs. ExPASy TrEMBL
Match: A0A803QE56 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 30   NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
            ++EDK++WH +K+  Y+V+SGY +A +L    + SN +++  WW+      +P K+K  V
Sbjct: 1172 DIEDKIMWHYTKNGEYSVKSGYCMAMELRKEVTQSNEKDMMAWWRGMWKLKLPPKVKHFV 1231

Query: 90   GKLLREFLPSGSTLVKKGMEVDPRCIR 117
             K+   +LP+ S L  +GM+VDPRC R
Sbjct: 1232 WKMANSWLPTHSALTSRGMDVDPRCSR 1258

BLAST of Moc04g09110 vs. ExPASy TrEMBL
Match: A0A803PV25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 0

Query: 30   NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
            ++EDK++WH SKD  Y+VRSGY +A+ L  RD  SN +  ++WW+      +P K+K  V
Sbjct: 1550 DIEDKILWHYSKDGEYSVRSGYRMAAALEVRDIQSNTEATNRWWRQLWKLKIPPKVKHFV 1609

Query: 90   GKLLREFLPSGSTLVKKGMEVDPRCIR 117
             K+   ++P+ S L  + ++++P C R
Sbjct: 1610 WKMAHSWIPTNSALAHRKVQIEPYCTR 1636

BLAST of Moc04g09110 vs. ExPASy TrEMBL
Match: A0A803QA44 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.3e-12
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0

Query: 30  NVEDKLIWHDSKDDFYTVRSGYGLASDLLHRDSNSNVQELSKWWKVFVNANVPNKIKILV 89
           ++EDK++WH  K+  Y+V +GY LASDLL  +S S+   LS WW       +P K+K  V
Sbjct: 298 DLEDKIMWHYRKNGEYSVSNGYRLASDLLEEESQSDNSRLSGWWNGLWKKKIPPKVKHFV 357

Query: 90  GKLLREFLPSGSTLVKKGMEVDPRCIRLDE 120
            K+   ++P+  +L  +GM +D  C R  E
Sbjct: 358 WKICHSWIPTKVSLAHRGMAIDKTCFRCSE 387

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030487384.11.3e-1239.08uncharacterized protein LOC115704310 [Cannabis sativa][more]
KAF4359788.12.9e-1240.00hypothetical protein F8388_008350 [Cannabis sativa] >KAF4383970.1 hypothetical p... [more]
XP_030495196.16.0e-1040.24uncharacterized protein LOC115710989 [Cannabis sativa][more]
KAF4391669.11.0e-0937.08hypothetical protein F8388_005434 [Cannabis sativa] >KAF4400672.1 hypothetical p... [more]
XP_030505314.11.3e-0942.35uncharacterized protein LOC115720302 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A803P3X41.1e-1240.23Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6GNP71.4e-1240.00zf-RVT domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_008350 PE=4... [more]
A0A803QE561.4e-1239.08Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PV251.4e-1237.93Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QA445.3e-1238.89Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g09110.1Moc04g09110.1mRNA