Moc04g09030 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g09030
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr4: 6675561 .. 6678674 (-)
RNA-Seq Expression	Moc04g09030
Synteny	Moc04g09030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGCAACAGCCTTCTTCACAGCTTCTTCCAAGCCCGCCGGCACTCCGACGATCTCGTTCCCGGGAGTGCGTTTTAAGTAAGTATCAAATACGTTGGAAAGATTTTTTTTAAATAAGGGAAAATTGGCTTTGGAAATCATGCAACACATTCTTTCTATCAAAAGATTTTTTTTTTTTAGAAAAAAATGTTTTTTTTAAGAAAAAGTTTTTTTTTTTACTTTTTTTCAAACGAAAATGCTTTAGTAAGAAACCTTTTTTTTAAGATAAAAAAAATCTTCTAAATTAATTTTAAATAAGTTTTTGAAAATAAAATAAGGATTTTGATATTTTAAAATTTGTTTTAAAATAAAAAGTTTTCTTTTTCTAATAAATAAGAGTTTTTTAAATGAAATAAATATAAACTTAATTTTATTTTAATAAAATATTTTACTTTAAAATTTTGGTTAAAATAGGTTGAAAAAAATAGGAGTTTTATAAAATAAATCTTGTTTAAAAAAATTTGGATTCTTTTAAATTTGGATTCAAAGTTTAAGAGAGTTTTTATTTAAAATGTAGTTTTTATTTAAAATGATTTTTTTTTTACAAGGTTTACTTTTTGTGTCAACTTTGTTTTATTTTTTTTAATTAAAAACAAATATTCTACCGCAGGATTTAAAAAAATGAGGAGATAAAAACAGAGTATTTTAGAATAAAATCCTTTTTTTTTAAAAAAAATTCCTTTTAATGGTTTTGTGGTTATGATTTTCAAAAGAATCTTAACAAAAAATCGGTTTAAGCAAATAAGTTTTGTTAAAGTAAATTTGACTTTGTTCTTAAATAAAAGTTTTTTTTTCTTTTAAACAATCTTGTTAATTTCGAAATAAATAAAAAAAGTTATTTATTTTTTGTTTTAATTGAACAAAATTTGTAGGTTTTTTTTTAGTTTAAAAAAATAAATTAAAACTTTTGTTTTTGTAAAAGAATATAATGTTTACATCTTAGGATGTTAGAATAGTGGTAAATGTTTGATTTTTAATGTTACATGACACAAGTTCGAGTCTTTTAAAAAGGAGCATAGCTTATATTTAAAGTGGTACTCATGTCGTAAGTTCAAGACTTATTGTTCCCTAAAATTAAAATTATTTTTTATATTTATTATTTTTTTGCTAAATAATTATTTCAAAAACTCCAATGACAGAAATTGGGACCTTCCAATATGCTCGAGGTATTAAAATTTTGCTAATGGTCTTCGTGCCACTCATATCTATTAATTCAAATCTTATAACAAGGTGTGAATTAATATAATACGGGACATTTAAAATAAAATAAAAACATTTTTCTTTGGACCAAATAAAATAATAGGATAATTTTTTACAAAATGTGGTACCGTTTTCAAACGGCTGTCGTAGGGTGCTAACACCTTCCCTACGCTCAGTCGACTCCTGAACCAACAATCTGTTTTCGCAGACCTTGTCTTTATTTATAGGTGACCAATCACACCTCGTAGATGATTGGTGACGACTCCAAACCCTTATCTCGAAAGAGACTCTTCAGGGGATGACGTCGGCCGCTCCGCGTTGCAATGGCGTTGCGACAGCTTGGCGACTCCACTGGGGACTTTAGAGAGCCAAGCCATTATTTTTGTCATTTGTTATCCCATTATATTTCTTGTTGGTCCGCTTTGTTTTTTTTTATGTTATTTTAATTATTCTATTGTATAGTGTAATATTATCTTTGCATCATTATGCATGTCACACACATTCACAAGCCTCTTACCCAGGCTTTACCCTTAGGATTAGATCGGAGACTGAGTAGTGTGACCTTTGTGGAATTTCGATTCCCGTGTAGGCGCATGAAATTCTCCACTCAAGTCGACCATACTACCAAACATATGGAAGATTTGGGGGCCATTATCCTATAGGATGCATTAGTACATAACTTTACATCATATTCATATTGCATTTTATGTGGGTTGTTATGTTGTTCACGACATTTCGTTCTTTAGGGTTGATTTGGAGTTTTAACCATAAGGTTTTAAATAAACCACTTTTTTTAAAAAGGAAAAAATAAAAAAATCATTTACCTTACTTCTTCCTGTCTATTTGTTTGAGTTTTCGGTAGAAATGTTGTCTTTCAAAAGGGTTATAAATGTCCCTATGTAGGCCCACCAAAGACTTTCAAATTCATTCATTTTTTATCCAAAACTTAGGAGTTAAGCCTTAACCCCTAGAATTAAATATCATGCATATTCATGTCTCTCTCTTACGATGACCTAAAGTCTAGCATTGCATTTGGATGCACTAATAATTGCATGAATTGTTTCAAAAAAATAATAATACATAATTGCATGAAACATATATCATATCATTAGGGCATTTTTGTAGCATATATAAAGAAGATCAAAGTAAAAACTCTGTCTTTCTCATGCCTCATGTCACATGTGTACATATCATAATTTAAAAGAATATATCCCGCATTTATCATTTTACATGTCCATCATTCTCATGCATCACTAAAAACCTCTATATCATCTTATGCATGCATCATTCCATATGTTCATAATCATTTCAAAATTTTCCCCTAATTGGTGATCTAACATTTGCATCACATCGTCTCATGCATATCAATTTCTATCTTAAAAAAAATCAAAATCTATGCATTCTCCATTACATCATAATTAACACGAACTCTTAAAAAATAGCTCAACAACCACATATTTACCATTCTTTATATACAAGGTACATAAAGCAGCATAACATGGGAGAGCTCAATGCCGAGCTAAAGAATATTAGAGACGACATCCACGAACTGGTCAGGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGACGAGATTGAAGAACATGTCATGGAGGTGCAGAATGCAAAACTAAAGAAGATGAGACAAGATATCGATAAGATTCAGGGACAAGTGACAGAAATTTTCAATATCTTAAAAAATATTGTTGGGGGCATTTCTCACCCTAACAATTTAGTCGAACCTCATAACAATTCATCACCTAAGGTGAACTCACCTCTTTGTCAGTCAATAGAGGACTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAATGCCAACAAGCTCCTACAATCTGTTAG

mRNA sequence

ATGACAGCAACAGCCTTCTTCACAGCTTCTTCCAAGCCCGCCGGCACTCCGACGATCTCGTTCCCGGGAGTGCGTTTTAAGTACATAAAGCAGCATAACATGGGAGAGCTCAATGCCGAGCTAAAGAATATTAGAGACGACATCCACGAACTGGTCAGGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGACGAGATTGAAGAACATGTCATGGAGGTGCAGAATGCAAAACTAAAGAAGATGAGACAAGATATCGATAAGATTCAGGGACAAGTGACAGAAATTTTCAATATCTTAAAAAATATTGTTGGGGGCATTTCTCACCCTAACAATTTAGTCGAACCTCATAACAATTCATCACCTAAGGTGAACTCACCTCTTTGTCAGTCAATAGAGGACTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAATGCCAACAAGCTCCTACAATCTGTTAG

Coding sequence (CDS)

ATGACAGCAACAGCCTTCTTCACAGCTTCTTCCAAGCCCGCCGGCACTCCGACGATCTCGTTCCCGGGAGTGCGTTTTAAGTACATAAAGCAGCATAACATGGGAGAGCTCAATGCCGAGCTAAAGAATATTAGAGACGACATCCACGAACTGGTCAGGGAAGAATTGAATACTGAGCTAAAGAAAATAAGAGACGAGATTGAAGAACATGTCATGGAGGTGCAGAATGCAAAACTAAAGAAGATGAGACAAGATATCGATAAGATTCAGGGACAAGTGACAGAAATTTTCAATATCTTAAAAAATATTGTTGGGGGCATTTCTCACCCTAACAATTTAGTCGAACCTCATAACAATTCATCACCTAAGGTGAACTCACCTCTTTGTCAGTCAATAGAGGACTTCCCCCAGCATAATTCATCACATGAAGCTCAGCTTTCCAAGAAATGCCAACAAGCTCCTACAATCTGTTAG

Protein sequence

MTATAFFTASSKPAGTPTISFPGVRFKYIKQHNMGELNAELKNIRDDIHELVREELNTELKKIRDEIEEHVMEVQNAKLKKMRQDIDKIQGQVTEIFNILKNIVGGISHPNNLVEPHNNSSPKVNSPLCQSIEDFPQHNSSHEAQLSKKCQQAPTIC

Homology

[Close]

BLAST of Moc04g09030 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-40
Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 34  MGELNAELKNIRDDIHELVREELNTELKKIRDEIEEHVMEVQNAKLKKMRQDIDKIQGQV 93
           M E NAELKNI D+IHE V EELN ELKKIRDEI+E VMEVQN +LKKMRQDID IQ QV
Sbjct: 1   MEEFNAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQV 60

Query: 94  TEIFNILKNI--VGGISHPNNLVEPHNNSSPKVNSPLCQSIEDFPQHNSSHEAQLSKKCQ 153
            +I N+LKNI  VGG S PNNLVEP+NNSSP+V+ PLCQS E FPQH+SSH+AQLSKK Q
Sbjct: 61  MKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQ 120

Query: 154 QAPTIC 158
           Q PT C
Sbjct: 121 QVPTNC 126

[Close]

BLAST of Moc04g09030 vs. NCBI nr
Match: XP_022143515.1 (uncharacterized protein LOC111013388 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 9.9e-29
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 28  YIKQHNMGELNAELKNIRDDIHELVREELNTELKKIRDEIEEHVMEVQNAKLKKMRQDID 87
           YIKQ+NM E NAELK IRD+IHE V EELN ELK+IRDEI+EHV EV N +LKKMRQDID
Sbjct: 40  YIKQYNMEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVHNVELKKMRQDID 99

Query: 88  KIQGQVTEIFNILKNI--VGGISHPNNLVEPHNNSSPKVNSPL 129
           KIQGQVT I N+LK I  VG IS PNNLVEPHNNSS +V   L
Sbjct: 100 KIQGQVTGILNVLKKIVTVGDISQPNNLVEPHNNSSLRVGPSL 142

[Close]

BLAST of Moc04g09030 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.5e-40
Identity = 94/126 (74.60%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 34  MGELNAELKNIRDDIHELVREELNTELKKIRDEIEEHVMEVQNAKLKKMRQDIDKIQGQV 93
           M E NAELKNI D+IHE V EELN ELKKIRDEI+E VMEVQN +LKKMRQDID IQ QV
Sbjct: 1   MEEFNAELKNISDEIHERVIEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQV 60

Query: 94  TEIFNILKNI--VGGISHPNNLVEPHNNSSPKVNSPLCQSIEDFPQHNSSHEAQLSKKCQ 153
            +I N+LKNI  VGG S PNNLVEP+NNSSP+V+ PLCQS E FPQH+SSH+AQLSKK Q
Sbjct: 61  MKILNVLKNIVTVGGTSQPNNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQ 120

Query: 154 QAPTIC 158
           Q PT C
Sbjct: 121 QVPTNC 126

[Close]

BLAST of Moc04g09030 vs. ExPASy TrEMBL
Match: A0A6J1CP05 (uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013388 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 28  YIKQHNMGELNAELKNIRDDIHELVREELNTELKKIRDEIEEHVMEVQNAKLKKMRQDID 87
           YIKQ+NM E NAELK IRD+IHE V EELN ELK+IRDEI+EHV EV N +LKKMRQDID
Sbjct: 40  YIKQYNMEEFNAELKKIRDEIHERVIEELNXELKEIRDEIQEHVXEVHNVELKKMRQDID 99

Query: 88  KIQGQVTEIFNILKNI--VGGISHPNNLVEPHNNSSPKVNSPL 129
           KIQGQVT I N+LK I  VG IS PNNLVEPHNNSS +V   L
Sbjct: 100 KIQGQVTGILNVLKKIVTVGDISQPNNLVEPHNNSSLRVGPSL 142

The following BLAST results are available for this feature:

BLAST of Moc04g09030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153553.1	7.3e-40	74.60	uncharacterized protein LOC111021029 [Momordica charantia]	[more]
XP_022143515.1	9.9e-29	73.79	uncharacterized protein LOC111013388 [Momordica charantia]	[more]

BLAST of Moc04g09030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc04g09030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHS7	3.5e-40	74.60	uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1CP05	4.8e-29	73.79	uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Moc04g09030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g09030.1	Moc04g09030.1	mRNA