Moc04g06970 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc04g06970
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA-directed RNA polymerase family protein
Location	chr4: 4917438 .. 4920984 (-)
RNA-Seq Expression	Moc04g06970
Synteny	Moc04g06970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGGCATCGTACCAGCGCTTCCCGAAGGTGAAGATCCGAGAGCTCAGAGATGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTTCCCACCATCGCCATTGACCTTGTTGAAATCGAAGTGAACTCCTCCGTTCTCAACGACGAGTTCATCGCCCACCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCTATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGCGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCATTAGTTCTGATCACACTGTTGTGCCTGTTGATTTCGCTGATTCTGCTGCTGCTAGTGGTGAAGTGCTCGATACCAAGTATTTCCTCTCAAATCTTCTGTCTTTTCTTTTACACCTGTTGCTAGAGATTGTCTATTTCTACTCAGGAGCTACGAAGTTCTGATTGCTTATTTCTAGGCAACATTGCTGCGTGGTTGTAATGGGGGTCGATATCATTTTAATCTAGGATATCTAGCATCATTACGTTGGAAGTTACTGCTCCCCAATTTGAACTGGTCTTGTGGTAATTGTAGAGGAATAATCATTGTGAAGCTACGGCGCGGTCAAGAACTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAGGATCATGCAAAATGGTCTCCTGCAGCAACTGTGACCTTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACGTTAACACTAGAGGAAAGGAAAACCTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAAGTTGATCCTAATACCCACCAGGTTCTTCTCATATGACCTCAATCTCATTTTCTTTTTATTTGTTGCAATAATCCGCTGAAATTTTCAGGCTGCCCTCGTATTATTGTGCTATTTCCCTGAGGGCTATGTTCTGGATTGTATCTGTCCTCTTGTATCACTGTCTATTGTTTGTGGTTTGCCAGGCAGATTTAGCATGTTTGTAAGTTTTGAGAATAAAATATAGTATTTTTTTTTTTTCTATTGCTTTTCATATGAGGGAGAGCTAATGTAAGATTAGAATCAAGATAGATGAAATCTAGTACTAATTCTGTGACTTTGCAAAGAAGGGCCTTGTTATACCTTTTTTTTTTATAAGAAACTTTGCTAAATCATAAAAAAACCTTTCAATCCTTGAGGATCATGTAAATAGGACAGTTACAAAAGAATTTGCTATAAGAATGGCTCCACCTAGAAGTTCTAAGCTGTACAGTATTACAAAAATAGTAAGATTAGAAGCCTTATCCTCAAAATATCTCTGGTTCCTTTCCAGCCAAAGACACAAGCAGAAAATCCCCAAAGGGTTTTTGCTTTCCACCCTAGATTCCAGCCCTGAAGCGATACCAAAAGCCTATCTTTCACATTCCTCGAGAGACACAAAGATAACCAAAAAGGTTTAAGAAGTATTCCCATATCTTCTAAGCATAATTTCAGTTGAGGAATAAATGATATATATTCTCCTCATCTGAAAGACACAGAACACGCGCCGTAGGAGGAAGCACCTAGTTCTTGGATATCCTTTGCAGCTTGATTTGAGCGTTCAACCCCTTATGAGATAACAATCATAGGAAGACTTTTGTTGTACTCAAACTTCTAGATCTTTTAGTTTTGGCATTACATGTTAGCAAGCTGTTTGTTTGCGTTCATTTGCTAGTTTTGAGTTGACAACTAAGGTTTTTATGATGTACCTCATTTACATGATACTGTGGAAGTGTGTTCCTCTTCTACGTACATGATATTTTGAATGTTATTGATTTAGGCAGACAATCTAATCTCTCTCTCTCTTTTTTTTTTTAATAAGAAGGTAAACAATCTAGTTTTGAAAGTTGTAACCACCTGTGCCAATTCTAAGTTGCATGCCTAGTCATGCTATAGGTGCCTTGCCTATTGCTAGGGCAGATGATTTGCACTTGATATGCATCATTGCATCTCCTTTGAAGCTCCCAATTTTTTAGATTAACGTTATTACTACTATTCTTCACTTTCTTACATATAACTCTTATCAGTGCTCTTTTGTAGCTATTTTCCTCTTTTTTCCTTTTTGGTCAAAGGTGATACGAATTCTCTCTCAAATATTTAAGAATCTTATTTCATTGCCCTGTGTGTAATATTTTTTACCTTCAAAGATCTACAGATTCTACCTTTATAATATACCTAAAGAAATGCTATATATGTCTAATGTAATTATTTACTGATATAATCTTGTGCCTTATAACAAACACCCAGAGAAGTTCCACATGTTAGGAGGAAAAAAGAAGGGCACCTTGTCCATCTGCCAATTTCTTGAAGGGGTGAGCTAGTTAGGAGAGATTATTATTGTTACAAGGTTGGGCTTGGTTCATTGCTAATTAGGGCAATTTGGGTTGGGGCTGTTGGGCATATTTGCAGCCCGAGCATCTTGCAATGGGTTCAAAACTTCACTCCACTAACCTAACATAACTCAACCCTTAGACATCCAACCTTTAAGGCCATTTCTCTTTTAGAATTCCAAATATTTAGAAACATAAATATCCAGATACTTTGATGCTTGGGTATCTAGATAGATGCATTGCAATGATAAAGATAGCTGCATTCTTTTTGCTGAATTTGTCCATAAGAATGTAATGAAGTTAACACATGTTCTGATAATGCCTTTGTTGTAAGTTCTTGTTAATTTATTCTATACGTCTATTCTGTTTATATTAATTTTATGTTCTTGTCAGTCAATGTAAATTATACTATTTTCATGTCTCATTTTATACTTCAATTAATTTAAGAATTTTTTTAATGAAATATTGGTTGAACATTTACATTTTACATACTCATTTAACATAAATATAGTTTCCTAAAGTAATAAAATATTATGAGTTTCCTATAAATTATAAAGAGTGAGAGAGCTTGTATGGTCTTGTCAATTATGAGGTTCTTTTGGAGTAAAATAAAGTTTGTTGAAGAGCAATTAAGGAAAAAAGGGATTATGATCCCATTGTATTTCATATAAGCCCAAAGGGTCAAGTATTGCCTCTAGCTGCTTCAGTTACTACTCTTTTAATGTAATTTCTTCAAGTTGGTGCTGCTTCTGTAACAATATGAGTACCTTAGCTATTTCCTTGTATTTGGCCAATAATTTTTTTTCTCCATTAATTTTTGAAAAGGTTGTGGTGGTTGATCCTGAGGCTTACACTTACGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTTGTGGATATCACTGCCAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCTCAATTGATACTTAATGCCATAGATATTCTGAAACAGAAGCTGGATGCAGTCCGCCTTTCAGATGATACTGTAGAAGCAGACGACCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

mRNA sequence

ATGGAAGGGGCATCGTACCAGCGCTTCCCGAAGGTGAAGATCCGAGAGCTCAGAGATGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTTCCCACCATCGCCATTGACCTTGTTGAAATCGAAGTGAACTCCTCCGTTCTCAACGACGAGTTCATCGCCCACCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCTATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGCGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCATTAGTTCTGATCACACTGTTGTGCCTGTTGATTTCGCTGATTCTGCTGCTGCTAGTGGTGAAGTGCTCGATACCAAAGGAATAATCATTGTGAAGCTACGGCGCGGTCAAGAACTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAGGATCATGCAAAATGGTCTCCTGCAGCAACTGTGACCTTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACGTTAACACTAGAGGAAAGGAAAACCTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAAGTTGATCCTAATACCCACCAGGTTGTGGTGGTTGATCCTGAGGCTTACACTTACGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTTGTGGATATCACTGCCAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCTCAATTGATACTTAATGCCATAGATATTCTGAAACAGAAGCTGGATGCAGTCCGCCTTTCAGATGATACTGTAGAAGCAGACGACCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Coding sequence (CDS)

ATGGAAGGGGCATCGTACCAGCGCTTCCCGAAGGTGAAGATCCGAGAGCTCAGAGATGACTACGCCAAGTTCGAGCTCCGCGACACCGACGCCAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTTCCCACCATCGCCATTGACCTTGTTGAAATCGAAGTGAACTCCTCCGTTCTCAACGACGAGTTCATCGCCCACCGCCTCGGTCTCATTCCCCTCACCAGCGAGCGTGCTATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGTGATGGCGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCATTAGTTCTGATCACACTGTTGTGCCTGTTGATTTCGCTGATTCTGCTGCTGCTAGTGGTGAAGTGCTCGATACCAAAGGAATAATCATTGTGAAGCTACGGCGCGGTCAAGAACTGAGGTTGAGAGCCATAGCCAGGAAGGGCATTGGTAAGGATCATGCAAAATGGTCTCCTGCAGCAACTGTGACCTTCATGTATGAGCCAAGCATTCACATCAATGAAGACCTAATGGAAACGTTAACACTAGAGGAAAGGAAAACCTGGGTTGAAAGTTGCCCAACCAGAGTATTTGAAGTTGATCCTAATACCCACCAGGTTGTGGTGGTTGATCCTGAGGCTTACACTTACGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTAAAGCTGGACTTGTGGATATCACTGCCAAAGAAGATAGTTTTATCTTCACAGTTGAATCTACCGGTGCAATCAAAGCTTCTCAATTGATACTTAATGCCATAGATATTCTGAAACAGAAGCTGGATGCAGTCCGCCTTTCAGATGATACTGTAGAAGCAGACGACCAGTTTGGTGAGTTAGGTGCACATATGCGAGGTGGATGA

Protein sequence

MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLSDDTVEADDQFGELGAHMRGG

Homology

[Close]

BLAST of Moc04g06970 vs. NCBI nr
Match: XP_022147788.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >XP_022147789.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia])

HSP 1 Score: 626.3 bits (1614), Expect = 1.4e-175
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. NCBI nr
Match: XP_008441761.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 607.4 bits (1565), Expect = 6.9e-170
Identity = 308/320 (96.25%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE+ TWVESCPTRVFE+DP THQV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. NCBI nr
Match: XP_004138895.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.1 hypothetical protein Csa_006771 [Cucumis sativus])

HSP 1 Score: 607.1 bits (1564), Expect = 9.0e-170
Identity = 308/320 (96.25%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE++TWVESCPTRVFE+D  THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. NCBI nr
Match: XP_038891253.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida])

HSP 1 Score: 600.5 bits (1547), Expect = 8.4e-168
Identity = 305/320 (95.31%), Postives = 313/320 (97.81%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH+DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHNDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAA+GE LD+KGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDSKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLM+TLT EE++TWVESCPTRVFE D  THQV VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMDTLTPEEKRTWVESCPTRVFEFDSVTHQVTVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. NCBI nr
Match: XP_022927752.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022927753.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022988851.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_022988852.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_023530056.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023530057.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >KAG6588685.1 DNA-directed RNA polymerases II, IV and V subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 599.7 bits (1545), Expect = 1.4e-167
Identity = 305/320 (95.31%), Postives = 313/320 (97.81%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE+ +WVES PT+VFE+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. ExPASy Swiss-Prot
Match: Q39211 (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 2.1e-145
Identity = 262/320 (81.88%), Postives = 293/320 (91.56%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+GA+YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DL S+D TV PVDF   ++ S +  + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEP I INED+M+TL+ EE+   +ES PT+VF +DP T QVVVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of Moc04g06970 vs. ExPASy Swiss-Prot
Match: Q39212 (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 477.6 bits (1228), Expect = 1.1e-133
Identity = 244/320 (76.25%), Postives = 280/320 (87.50%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DL S+D TV PVDF  +++ S +  + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVT+MYEP I INE++M TLT EE+   +ES PT+VF +DP T QVVVVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of Moc04g06970 vs. ExPASy Swiss-Prot
Match: Q54DH7 (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.7e-70
Identity = 144/293 (49.15%), Postives = 201/293 (68.60%), Query Frame = 0


Query: 8   RFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFI 67
           R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 68  AHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLIS 127
           AHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS DL+S
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 129

Query: 128 SDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATV 187
            +  V+PV    +++ S      + I IVKLRRGQE++LRAIA+KG+GK+HAKWSP+   
Sbjct: 130 QNSAVIPVSSQVTSSNS-----EQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVA 189

Query: 188 TFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDP--NTHQVVVVDPEAYTYDDEV 247
           T+ ++P I +N++ ++ LT ++++ WV SCPT+V+   P  +T QV + DP    Y  E 
Sbjct: 190 TYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLEC 249

Query: 248 IKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVR 299
            KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L AI I+K+KL  ++
Sbjct: 250 KKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of Moc04g06970 vs. ExPASy Swiss-Prot
Match: Q3T0Q3 (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-49
Identity = 120/290 (41.38%), Postives = 170/290 (58.62%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           LIS+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYDDE 245
           A V F Y+P     ++ +      + + W +S                      Y+  DE
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---------------------EYSELDE 242

Query: 246 VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 295
              +A         D   K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 DESQAP-------YDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Moc04g06970 vs. ExPASy Swiss-Prot
Match: P97760 (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)

HSP 1 Score: 195.7 bits (496), Expect = 8.2e-49
Identity = 119/290 (41.03%), Postives = 170/290 (58.62%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           LIS+   V+PV   +      + ++   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYTYDDE 245
           A V F Y+P     ++ +      + + W +S                      Y+  DE
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---------------------EYSELDE 242

Query: 246 VIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKL 295
              +A         D   K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 DESQAP-------YDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Moc04g06970 vs. ExPASy TrEMBL
Match: A0A6J1D221 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia OX=3673 GN=LOC111016637 PE=3 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 6.9e-176
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. ExPASy TrEMBL
Match: A0A1S3B3P9 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=3 SV=1)

HSP 1 Score: 607.4 bits (1565), Expect = 3.3e-170
Identity = 308/320 (96.25%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE+ TWVESCPTRVFE+DP THQV+VV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. ExPASy TrEMBL
Match: A0A0A0LHS1 (RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 4.3e-170
Identity = 308/320 (96.25%), Postives = 316/320 (98.75%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE++TWVESCPTRVFE+D  THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITA+EDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. ExPASy TrEMBL
Match: A0A6J1JIE7 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486077 PE=3 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 6.9e-168
Identity = 305/320 (95.31%), Postives = 313/320 (97.81%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE+ +WVES PT+VFE+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. ExPASy TrEMBL
Match: A0A6J1ELW4 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111434562 PE=3 SV=1)

HSP 1 Score: 599.7 bits (1545), Expect = 6.9e-168
Identity = 305/320 (95.31%), Postives = 313/320 (97.81%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGASYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDL SSDHTVVPVDF+DSAAA+GE LDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEPSIHINEDLMETLTLEE+ +WVES PT+VFE+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of Moc04g06970 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-146
Identity = 262/320 (81.88%), Postives = 293/320 (91.56%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+GA+YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DL S+D TV PVDF   ++ S +  + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVTFMYEP I INED+M+TL+ EE+   +ES PT+VF +DP T QVVVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I+ K+DSFIFTVESTGA+KASQL+LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           DDTVEADDQFGELGAHMRGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of Moc04g06970 vs. TAIR 10
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 477.6 bits (1228), Expect = 7.7e-135
Identity = 244/320 (76.25%), Postives = 280/320 (87.50%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DL S+D TV PVDF  +++ S +  + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240
           WSPAATVT+MYEP I INE++M TLT EE+   +ES PT+VF +DP T QVVVVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMGK GL++I  K DSF+FTVESTGA+KASQL+LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHMRGG 321
           D+TVEADDQFGELGAHMR G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of Moc04g06970 vs. TAIR 10
Match: AT2G15400.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 330.5 bits (846), Expect = 1.5e-90
Identity = 168/231 (72.73%), Postives = 196/231 (84.85%), Query Frame = 0


Query: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DL S+D TV PVDF  +++ S +  + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQV 232
           WSPAATVT+MYEP I INE++M TLT EE+   +ES PT+VF +DP T QV
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230

[Close]

BLAST of Moc04g06970 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 128.6 bits (322), Expect = 8.7e-30
Identity = 97/319 (30.41%), Postives = 155/319 (48.59%), Query Frame = 0


Query: 3   GASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G  Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------ISSDHTVVPVDFADSAAASGEVLDTKG---------IIIVKLRRG 182
           + DL            S + T  P  +   + +   + +            I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRV 242
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L     +  V  CP  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FEVD---PNTHQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIK 298
           F+++       +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

[Close]

BLAST of Moc04g06970 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 128.6 bits (322), Expect = 8.7e-30
Identity = 97/319 (30.41%), Postives = 155/319 (48.59%), Query Frame = 0


Query: 3   GASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G  Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------ISSDHTVVPVDFADSAAASGEVLDTKG---------IIIVKLRRG 182
           + DL            S + T  P  +   + +   + +            I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRV 242
           QE+ L A A KGIGK HAKWSP  T  +   P + +  ++ + L     +  V  CP  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FEVD---PNTHQVVVVDPEAYTYDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIK 298
           F+++       +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

The following BLAST results are available for this feature:

BLAST of Moc04g06970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147788.1	1.4e-175	100.00	DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >...	[more]
XP_008441761.1	6.9e-170	96.25	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
XP_004138895.1	9.0e-170	96.25	DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343....	[more]
XP_038891253.1	8.4e-168	95.31	DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida]	[more]
XP_022927752.1	1.4e-167	95.31	DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >X...	[more]

BLAST of Moc04g06970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39211	2.1e-145	81.88	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3...	[more]
Q39212	1.1e-133	76.25	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702...	[more]
Q54DH7	1.7e-70	49.15	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689...	[more]
Q3T0Q3	2.8e-49	41.38	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1...	[more]
P97760	8.2e-49	41.03	DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P...	[more]

BLAST of Moc04g06970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D221	6.9e-176	100.00	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia ...	[more]
A0A1S3B3P9	3.3e-170	96.25	LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS...	[more]
A0A0A0LHS1	4.3e-170	96.25	RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 ...	[more]
A0A6J1JIE7	6.9e-168	95.31	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=...	[more]
A0A6J1ELW4	6.9e-168	95.31	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata O...	[more]

BLAST of Moc04g06970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15430.1	1.5e-146	81.88	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	7.7e-135	76.25	DNA-directed RNA polymerase family protein	[more]
AT2G15400.2	1.5e-90	72.73	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	8.7e-30	30.41	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	8.7e-30	30.41	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..300 e-value: 6.9E-96 score: 334.5
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 23..294 e-value: 1.6E-21 score: 76.9
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 47..179 e-value: 1.1E-88 score: 299.3
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 e-value: 3.1E-33 score: 114.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 12..293 e-value: 1.1E-88 score: 299.3
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 10..302
None	No IPR available	PANTHER	PTHR11800:SF15	BNAA09G08480D PROTEIN	coord: 3..317
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 3..317
None	No IPR available	CDD	cd07031	RNAP_II_RPB3	coord: 10..303 e-value: 1.77513E-131 score: 373.092
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc04g06970.1	Moc04g06970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity