Moc04g06790 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g06790
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTransport membrane protein
Locationchr4: 4760258 .. 4760497 (-)
RNA-Seq ExpressionMoc04g06790
SyntenyMoc04g06790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAACCTTCGACGGTGAAATCTTTGACTTGAAAGCTCCGAAGAAGACTGAAACTGACCCCACTTTCATTGACTGGACGAGTGGAATGAGGGAAAGCGGCTCGATCGACAAAAAAGAAGAAGGAACCCCTAGAACCTGGAAAAGTCATGAATTCCCAAGCAATTCTAAACCAACATATGCGATTCATTCCCGTAAAGTATCTACAGGACATATGGCCGAGCAGGATGGCTTTGCTTAA

mRNA sequence

ATGCTAACCTTCGACGGTGAAATCTTTGACTTGAAAGCTCCGAAGAAGACTGAAACTGACCCCACTTTCATTGACTGGACGAGTGGAATGAGGGAAAGCGGCTCGATCGACAAAAAAGAAGAAGGAACCCCTAGAACCTGGAAAAGTCATGAATTCCCAAGCAATTCTAAACCAACATATGCGATTCATTCCCGTAAAGTATCTACAGGACATATGGCCGAGCAGGATGGCTTTGCTTAA

Coding sequence (CDS)

ATGCTAACCTTCGACGGTGAAATCTTTGACTTGAAAGCTCCGAAGAAGACTGAAACTGACCCCACTTTCATTGACTGGACGAGTGGAATGAGGGAAAGCGGCTCGATCGACAAAAAAGAAGAAGGAACCCCTAGAACCTGGAAAAGTCATGAATTCCCAAGCAATTCTAAACCAACATATGCGATTCATTCCCGTAAAGTATCTACAGGACATATGGCCGAGCAGGATGGCTTTGCTTAA

Protein sequence

MLTFDGEIFDLKAPKKTETDPTFIDWTSGMRESGSIDKKEEGTPRTWKSHEFPSNSKPTYAIHSRKVSTGHMAEQDGFA
Homology
BLAST of Moc04g06790 vs. NCBI nr
Match: KAF3452197.1 (hypothetical protein FNV43_RR08295 [Rhamnella rubrinervis])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEGTPRTWKS----HEFPSNSKPTYAIHSRK 67
           WTSGMRESGSI+KKE+ +P          EFPSNS+PTYAIHSRK
Sbjct: 217 WTSGMRESGSINKKEKSSPTLEPGKVTIKEFPSNSQPTYAIHSRK 261

BLAST of Moc04g06790 vs. NCBI nr
Match: KAF3452142.1 (hypothetical protein FNV43_RR08240 [Rhamnella rubrinervis])

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 30/45 (66.67%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEGTPRTWKS----HEFPSNSKPTYAIHSRK 67
           WTSGMRESGSI+KKE+ +P          EFPSNS+PTYAIHSRK
Sbjct: 783 WTSGMRESGSINKKEKSSPTLEPGKVTIKEFPSNSQPTYAIHSRK 827

BLAST of Moc04g06790 vs. NCBI nr
Match: YP_009477475.1 (transport membrane protein, partial [Citrus sinensis] >AVW89059.1 transport membrane protein, partial [Citrus sinensis])

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEGT----PRTWKSHEFPSNSKPTYAIHSRK 67
           WTSGMRESGSI+KK+       P     +EFPSNS+PTYAIHSRK
Sbjct: 260 WTSGMRESGSIEKKKRRVAPLEPGKLTINEFPSNSQPTYAIHSRK 304

BLAST of Moc04g06790 vs. NCBI nr
Match: KAF9608887.1 (hypothetical protein IFM89_011925 [Coptis chinensis])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 29/43 (67.44%), Postives = 32/43 (74.42%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEG--TPRTWKSHEFPSNSKPTYAIHSRK 67
           WTSGMRESGSIDK+      P     +EFPSNS+PTYAIHSRK
Sbjct: 198 WTSGMRESGSIDKRGVAPLEPGKVTLNEFPSNSQPTYAIHSRK 240

BLAST of Moc04g06790 vs. NCBI nr
Match: QKE23886.1 (SecY-independent membrane transporter protein [Scutellaria amoena])

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEG-----TPRTWKSHEFPSNSKPTYAIHSRK 67
           WTSGMRESGSIDKK+E       P     +EF SNS+PTYAIHSRK
Sbjct: 262 WTSGMRESGSIDKKKEKKSSPLEPGKVIINEFQSNSQPTYAIHSRK 307

BLAST of Moc04g06790 vs. ExPASy TrEMBL
Match: A0A2R4LW69 (Transport membrane protein (Fragment) OS=Citrus sinensis OX=2711 GN=mttB PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.2e-04
Identity = 29/45 (64.44%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEGT----PRTWKSHEFPSNSKPTYAIHSRK 67
           WTSGMRESGSI+KK+       P     +EFPSNS+PTYAIHSRK
Sbjct: 260 WTSGMRESGSIEKKKRRVAPLEPGKLTINEFPSNSQPTYAIHSRK 304

BLAST of Moc04g06790 vs. ExPASy TrEMBL
Match: A0A6M8E2W9 (SecY-independent membrane transporter protein OS=Scutellaria amoena OX=1052904 GN=mttB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEG-----TPRTWKSHEFPSNSKPTYAIHSRK 67
           WTSGMRESGSIDKK+E       P     +EF SNS+PTYAIHSRK
Sbjct: 262 WTSGMRESGSIDKKKEKKSSPLEPGKVIINEFQSNSQPTYAIHSRK 307

BLAST of Moc04g06790 vs. ExPASy TrEMBL
Match: A0A699JM43 (Transport membrane protein, mitochondrial OS=Tanacetum cinerariifolium OX=118510 GN=Tci_617495 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.6e-04
Identity = 30/47 (63.83%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 26  WTSGMRESGSIDKKEEGTPRTWK----SHEFPSNSKPTYAIHSRKVS 69
           WTSGMRESGSIDKK        K     +EFPSNS+ TYAIHSRK S
Sbjct: 139 WTSGMRESGSIDKKNSSLLEPSKVIIIINEFPSNSQQTYAIHSRKDS 185

BLAST of Moc04g06790 vs. ExPASy TrEMBL
Match: A0A1B1LND9 (Sec-independent protein translocase OS=Cynomorium coccineum OX=51503 GN=tatC PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.8e-04
Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 28  SGMRESGSIDKKEEGTPRTWKS---HEFPSNSKPTYAIHSRK 67
           SGMRESGSIDKKEE  P        +EFPSN +PTYAIHSRK
Sbjct: 242 SGMRESGSIDKKEESLPLEPDKVTINEFPSNYQPTYAIHSRK 283

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF3452197.13.8e-0566.67hypothetical protein FNV43_RR08295 [Rhamnella rubrinervis][more]
KAF3452142.13.8e-0566.67hypothetical protein FNV43_RR08240 [Rhamnella rubrinervis][more]
YP_009477475.12.5e-0464.44transport membrane protein, partial [Citrus sinensis] >AVW89059.1 transport memb... [more]
KAF9608887.14.2e-0467.44hypothetical protein IFM89_011925 [Coptis chinensis][more]
QKE23886.17.2e-0465.22SecY-independent membrane transporter protein [Scutellaria amoena][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2R4LW691.2e-0464.44Transport membrane protein (Fragment) OS=Citrus sinensis OX=2711 GN=mttB PE=3 SV... [more]
A0A6M8E2W93.5e-0465.22SecY-independent membrane transporter protein OS=Scutellaria amoena OX=1052904 G... [more]
A0A699JM434.6e-0463.83Transport membrane protein, mitochondrial OS=Tanacetum cinerariifolium OX=118510... [more]
A0A1B1LND97.8e-0469.05Sec-independent protein translocase OS=Cynomorium coccineum OX=51503 GN=tatC PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g06790.1Moc04g06790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane