Moc04g06220 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc04g06220
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCHC-type domain-containing protein
Locationchr4: 4264069 .. 4264695 (+)
RNA-Seq ExpressionMoc04g06220
SyntenyMoc04g06220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAAGAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACACTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAATTCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGACTGCGAGTGAGACTGAGTTAGTTTTGTCTCACACTATTAAAAAAGTTATTGTTTTCGCCATTTCATTTTATTTTTTATCTTATTTTTTTCTATTACAATTTCAACGCGACACTATACTCAATATATTTCTTAAAATGTAGCTATAACTTTATATTATAGGGTTTATGTTGTTTATAGAATTTGTGTAA

mRNA sequence

ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAAGAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACACTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAATTCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGACTGCGAAATTTGTGTAA

Coding sequence (CDS)

ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAAGAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACACTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAATTCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGACTGCGAAATTTGTGTAA

Protein sequence

MSAITLETEIGIESALVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENENTLHYMSTEVLACIEGNTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTTAKFV
Homology
BLAST of Moc04g06220 vs. NCBI nr
Match: RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
           ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N 
Sbjct: 175 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 234

Query: 75  ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
           E        +     +G         +   + + ++WV+DS AS HV S   +F S++ G
Sbjct: 235 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 294

Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
           + G VRMGN  +SKI G+GD+ L T
Sbjct: 295 DFGNVRMGNEDVSKIVGMGDICLET 319

BLAST of Moc04g06220 vs. NCBI nr
Match: RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
           ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N 
Sbjct: 411 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 470

Query: 75  ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
           E        +     +G         +   + + ++WV+DS AS HV S   +F S++ G
Sbjct: 471 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 530

Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
           + G VRMGN  +SKI G+GD+ L T
Sbjct: 531 DFGNVRMGNEDVSKIVGMGDICLET 555

BLAST of Moc04g06220 vs. NCBI nr
Match: RVW42505.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
           ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N 
Sbjct: 64  ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 123

Query: 75  ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
           E        +     +G         +   + + ++WV+DS AS HV S   +F S++ G
Sbjct: 124 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 183

Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
           + G VRMGN  +SKI G+GD+ L T
Sbjct: 184 DFGNVRMGNEDVSKIVGMGDICLET 208

BLAST of Moc04g06220 vs. NCBI nr
Match: KAA0051598.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK30545.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0

Query: 16  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
           LV + +G+ + K +        +        +EC YCH+KGH KKYCRKLK D +N    
Sbjct: 94  LVTERRGRSRSKSSRGNSRSKSKSKSDQFANVECHYCHEKGHIKKYCRKLKRDSKNHKGK 153

Query: 76  ----------NTLHYMSTEVLACI-EGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFT 135
                     NT+  ++TE+   + +G+   +  + S WV+DS+AS+H  S R  F S+T
Sbjct: 154 EKKNDDDSDTNTI-TVATEIFYILSDGDVVNLAIQQSSWVIDSSASIHATSKREVFASYT 213

Query: 136 AGNHGAVRMGNGRLSKIRGIGDVRL 146
            G+ G+VRMGN   + + GIGDV L
Sbjct: 214 LGDFGSVRMGNDESANVVGIGDVHL 237

BLAST of Moc04g06220 vs. NCBI nr
Match: TXG55926.1 (hypothetical protein EZV62_017239 [Acer yangbiense])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 16  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
           LV + +G+ K K  G +     +   +    +EC++C +KGH KKYCR+LK DH+NE   
Sbjct: 197 LVTEKRGRSKSKSRGPKNRDRSKSKSNKFANVECYHCGQKGHIKKYCRQLKRDHKNEKGK 256

Query: 76  ----------NTLHYMSTEVLACIEGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFTA 135
                     + +  ++ + L   + +   +    + WV+DS AS+H  S R +F S+T+
Sbjct: 257 EKKTDDSNDGDRVSAVTDDFLVVYDDDVVNLACHETSWVIDSGASIHATSRRDFFASYTS 316

Query: 136 GNHGAVRMGNGRLSKIRGIGDVRLTT 148
           G+ G V+MGN  ++K  G+GDV L T
Sbjct: 317 GDFGDVKMGNNGVAKAVGMGDVCLET 342

BLAST of Moc04g06220 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-10
Identity = 46/149 (30.87%), Postives = 70/149 (46.98%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYN---GKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHEN 74
           AL+ + +G+   + +   G+   R K  + S S    C+ C++ GHFK+ C   ++  + 
Sbjct: 195 ALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKG-KG 254

Query: 75  ENTLHYMSTEVLACIEGNTTPV-------------DRSSEWVVDSAASVHVNSDRSWFMS 134
           E +         A ++ N   V                SEWVVD+AAS H    R  F  
Sbjct: 255 ETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCR 314

Query: 135 FTAGNHGAVRMGNGRLSKIRGIGDVRLTT 148
           + AG+ G V+MGN   SKI GIGD+ + T
Sbjct: 315 YVAGDFGTVKMGNTSYSKIAGIGDICIKT 342

BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match: A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
           ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N 
Sbjct: 411 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 470

Query: 75  ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
           E        +     +G         +   + + ++WV+DS AS HV S   +F S++ G
Sbjct: 471 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 530

Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
           + G VRMGN  +SKI G+GD+ L T
Sbjct: 531 DFGNVRMGNEDVSKIVGMGDICLET 555

BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match: A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
           ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N 
Sbjct: 175 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 234

Query: 75  ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
           E        +     +G         +   + + ++WV+DS AS HV S   +F S++ G
Sbjct: 235 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 294

Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
           + G VRMGN  +SKI G+GD+ L T
Sbjct: 295 DFGNVRMGNEDVSKIVGMGDICLET 319

BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match: A0A438E432 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_810 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0

Query: 15  ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
           ALV + +G+G+ K          RG  S  S  ++EC+YCHKKGH K+ CRKLK   +N 
Sbjct: 64  ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 123

Query: 75  ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
           E        +     +G         +   + + ++WV+DS AS HV S   +F S++ G
Sbjct: 124 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 183

Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
           + G VRMGN  +SKI G+GD+ L T
Sbjct: 184 DFGNVRMGNEDVSKIVGMGDICLET 208

BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match: A0A5A7U8K2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold71G00110 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0

Query: 16  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
           LV + +G+ + K +        +        +EC YCH+KGH KKYCRKLK D +N    
Sbjct: 94  LVTERRGRSRSKSSRGNSRSKSKSKSDQFANVECHYCHEKGHIKKYCRKLKRDSKNHKGK 153

Query: 76  ----------NTLHYMSTEVLACI-EGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFT 135
                     NT+  ++TE+   + +G+   +  + S WV+DS+AS+H  S R  F S+T
Sbjct: 154 EKKNDDDSDTNTI-TVATEIFYILSDGDVVNLAIQQSSWVIDSSASIHATSKREVFASYT 213

Query: 136 AGNHGAVRMGNGRLSKIRGIGDVRL 146
            G+ G+VRMGN   + + GIGDV L
Sbjct: 214 LGDFGSVRMGNDESANVVGIGDVHL 237

BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match: A0A5C7HIC1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017239 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 0

Query: 16  LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
           LV + +G+ K K  G +     +   +    +EC++C +KGH KKYCR+LK DH+NE   
Sbjct: 197 LVTEKRGRSKSKSRGPKNRDRSKSKSNKFANVECYHCGQKGHIKKYCRQLKRDHKNEKGK 256

Query: 76  ----------NTLHYMSTEVLACIEGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFTA 135
                     + +  ++ + L   + +   +    + WV+DS AS+H  S R +F S+T+
Sbjct: 257 EKKTDDSNDGDRVSAVTDDFLVVYDDDVVNLACHETSWVIDSGASIHATSRRDFFASYTS 316

Query: 136 GNHGAVRMGNGRLSKIRGIGDVRLTT 148
           G+ G V+MGN  ++K  G+GDV L T
Sbjct: 317 GDFGDVKMGNNGVAKAVGMGDVCLET 342

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW84195.11.2e-1537.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW14266.11.2e-1537.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW42505.11.2e-1537.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KAA0051598.12.1e-1536.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TXG55926.12.1e-1533.56hypothetical protein EZV62_017239 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
P109787.9e-1030.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A438BTH65.8e-1637.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438HI915.8e-1637.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438E4325.8e-1637.24Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A5A7U8K21.0e-1536.55Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5C7HIC11.0e-1533.56Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017239 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 22..75
e-value: 2.3E-7
score: 32.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 49..64
score: 8.614303
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 29..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc04g06220.1Moc04g06220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding