Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAAGAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACACTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAATTCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGACTGCGAGTGAGACTGAGTTAGTTTTGTCTCACACTATTAAAAAAGTTATTGTTTTCGCCATTTCATTTTATTTTTTATCTTATTTTTTTCTATTACAATTTCAACGCGACACTATACTCAATATATTTCTTAAAATGTAGCTATAACTTTATATTATAGGGTTTATGTTGTTTATAGAATTTGTGTAA
mRNA sequence
ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAAGAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACACTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAATTCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGACTGCGAAATTTGTGTAA
Coding sequence (CDS)
ATGTCTGCAATTACATTAGAGACAGAAATCGGGATTGAATCAGCTTTGGTAGCTCAGTTTAAGGGGAAGGGCAAGATGAAGTACAACGGGAAGCAGGAACATAGGAATAAGAGGGGTAGTGGGAGTTCCAGTGGAGAAATCGAATGTTTTTACTGCCATAAGAAGGGCCACTTCAAGAAATACTGCAGGAAGCTTAAAGAGGATCATGAAAATGAGAACACTTTACATTACATGTCAACGGAGGTGTTAGCTTGTATTGAAGGTAACACAACACCTGTAGACCGGTCATCAGAATGGGTAGTGGACAGTGCAGCTTCGGTGCATGTAAATTCAGACAGGAGTTGGTTCATGTCCTTTACTGCAGGAAATCATGGCGCAGTGAGGATGGGAAATGGGAGACTCTCCAAGATTAGAGGAATTGGGGATGTTCGTCTAACGACTGCGAAATTTGTGTAA
Protein sequence
MSAITLETEIGIESALVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENENTLHYMSTEVLACIEGNTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAGNHGAVRMGNGRLSKIRGIGDVRLTTAKFV
Homology
BLAST of Moc04g06220 vs. NCBI nr
Match:
RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
ALV + +G+G+ K RG S S ++EC+YCHKKGH K+ CRKLK +N
Sbjct: 175 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 234
Query: 75 ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
E + +G + + + ++WV+DS AS HV S +F S++ G
Sbjct: 235 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 294
Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
+ G VRMGN +SKI G+GD+ L T
Sbjct: 295 DFGNVRMGNEDVSKIVGMGDICLET 319
BLAST of Moc04g06220 vs. NCBI nr
Match:
RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
ALV + +G+G+ K RG S S ++EC+YCHKKGH K+ CRKLK +N
Sbjct: 411 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 470
Query: 75 ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
E + +G + + + ++WV+DS AS HV S +F S++ G
Sbjct: 471 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 530
Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
+ G VRMGN +SKI G+GD+ L T
Sbjct: 531 DFGNVRMGNEDVSKIVGMGDICLET 555
BLAST of Moc04g06220 vs. NCBI nr
Match:
RVW42505.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
ALV + +G+G+ K RG S S ++EC+YCHKKGH K+ CRKLK +N
Sbjct: 64 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 123
Query: 75 ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
E + +G + + + ++WV+DS AS HV S +F S++ G
Sbjct: 124 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 183
Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
+ G VRMGN +SKI G+GD+ L T
Sbjct: 184 DFGNVRMGNEDVSKIVGMGDICLET 208
BLAST of Moc04g06220 vs. NCBI nr
Match:
KAA0051598.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK30545.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 16 LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
LV + +G+ + K + + +EC YCH+KGH KKYCRKLK D +N
Sbjct: 94 LVTERRGRSRSKSSRGNSRSKSKSKSDQFANVECHYCHEKGHIKKYCRKLKRDSKNHKGK 153
Query: 76 ----------NTLHYMSTEVLACI-EGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFT 135
NT+ ++TE+ + +G+ + + S WV+DS+AS+H S R F S+T
Sbjct: 154 EKKNDDDSDTNTI-TVATEIFYILSDGDVVNLAIQQSSWVIDSSASIHATSKREVFASYT 213
Query: 136 AGNHGAVRMGNGRLSKIRGIGDVRL 146
G+ G+VRMGN + + GIGDV L
Sbjct: 214 LGDFGSVRMGNDESANVVGIGDVHL 237
BLAST of Moc04g06220 vs. NCBI nr
Match:
TXG55926.1 (hypothetical protein EZV62_017239 [Acer yangbiense])
HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 0
Query: 16 LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
LV + +G+ K K G + + + +EC++C +KGH KKYCR+LK DH+NE
Sbjct: 197 LVTEKRGRSKSKSRGPKNRDRSKSKSNKFANVECYHCGQKGHIKKYCRQLKRDHKNEKGK 256
Query: 76 ----------NTLHYMSTEVLACIEGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFTA 135
+ + ++ + L + + + + WV+DS AS+H S R +F S+T+
Sbjct: 257 EKKTDDSNDGDRVSAVTDDFLVVYDDDVVNLACHETSWVIDSGASIHATSRRDFFASYTS 316
Query: 136 GNHGAVRMGNGRLSKIRGIGDVRLTT 148
G+ G V+MGN ++K G+GDV L T
Sbjct: 317 GDFGDVKMGNNGVAKAVGMGDVCLET 342
BLAST of Moc04g06220 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 65.1 bits (157), Expect = 7.9e-10
Identity = 46/149 (30.87%), Postives = 70/149 (46.98%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYN---GKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHEN 74
AL+ + +G+ + + G+ R K + S S C+ C++ GHFK+ C ++ +
Sbjct: 195 ALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKG-KG 254
Query: 75 ENTLHYMSTEVLACIEGNTTPV-------------DRSSEWVVDSAASVHVNSDRSWFMS 134
E + A ++ N V SEWVVD+AAS H R F
Sbjct: 255 ETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCR 314
Query: 135 FTAGNHGAVRMGNGRLSKIRGIGDVRLTT 148
+ AG+ G V+MGN SKI GIGD+ + T
Sbjct: 315 YVAGDFGTVKMGNTSYSKIAGIGDICIKT 342
BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match:
A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
ALV + +G+G+ K RG S S ++EC+YCHKKGH K+ CRKLK +N
Sbjct: 411 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 470
Query: 75 ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
E + +G + + + ++WV+DS AS HV S +F S++ G
Sbjct: 471 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 530
Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
+ G VRMGN +SKI G+GD+ L T
Sbjct: 531 DFGNVRMGNEDVSKIVGMGDICLET 555
BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match:
A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
ALV + +G+G+ K RG S S ++EC+YCHKKGH K+ CRKLK +N
Sbjct: 175 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 234
Query: 75 ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
E + +G + + + ++WV+DS AS HV S +F S++ G
Sbjct: 235 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 294
Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
+ G VRMGN +SKI G+GD+ L T
Sbjct: 295 DFGNVRMGNEDVSKIVGMGDICLET 319
BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match:
A0A438E432 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_810 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 54/145 (37.24%), Postives = 78/145 (53.79%), Query Frame = 0
Query: 15 ALVAQFKGKGKMKYNGKQEHRNKRGSGS--SSGEIECFYCHKKGHFKKYCRKLKEDHEN- 74
ALV + +G+G+ K RG S S ++EC+YCHKKGH K+ CRKLK +N
Sbjct: 64 ALVIENRGRGRSKSKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNK 123
Query: 75 ENTLHYMSTEVLACIEG---------NTTPVDRSSEWVVDSAASVHVNSDRSWFMSFTAG 134
E + +G + + + ++WV+DS AS HV S +F S++ G
Sbjct: 124 EKNSEKKQNDTAVVTDGELMIIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQG 183
Query: 135 NHGAVRMGNGRLSKIRGIGDVRLTT 148
+ G VRMGN +SKI G+GD+ L T
Sbjct: 184 DFGNVRMGNEDVSKIVGMGDICLET 208
BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match:
A0A5A7U8K2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold71G00110 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 53/145 (36.55%), Postives = 79/145 (54.48%), Query Frame = 0
Query: 16 LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
LV + +G+ + K + + +EC YCH+KGH KKYCRKLK D +N
Sbjct: 94 LVTERRGRSRSKSSRGNSRSKSKSKSDQFANVECHYCHEKGHIKKYCRKLKRDSKNHKGK 153
Query: 76 ----------NTLHYMSTEVLACI-EGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFT 135
NT+ ++TE+ + +G+ + + S WV+DS+AS+H S R F S+T
Sbjct: 154 EKKNDDDSDTNTI-TVATEIFYILSDGDVVNLAIQQSSWVIDSSASIHATSKREVFASYT 213
Query: 136 AGNHGAVRMGNGRLSKIRGIGDVRL 146
G+ G+VRMGN + + GIGDV L
Sbjct: 214 LGDFGSVRMGNDESANVVGIGDVHL 237
BLAST of Moc04g06220 vs. ExPASy TrEMBL
Match:
A0A5C7HIC1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017239 PE=4 SV=1)
HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 0
Query: 16 LVAQFKGKGKMKYNGKQEHRNKRGSGSSSGEIECFYCHKKGHFKKYCRKLKEDHENE--- 75
LV + +G+ K K G + + + +EC++C +KGH KKYCR+LK DH+NE
Sbjct: 197 LVTEKRGRSKSKSRGPKNRDRSKSKSNKFANVECYHCGQKGHIKKYCRQLKRDHKNEKGK 256
Query: 76 ----------NTLHYMSTEVLACIEGNTTPVD-RSSEWVVDSAASVHVNSDRSWFMSFTA 135
+ + ++ + L + + + + WV+DS AS+H S R +F S+T+
Sbjct: 257 EKKTDDSNDGDRVSAVTDDFLVVYDDDVVNLACHETSWVIDSGASIHATSRRDFFASYTS 316
Query: 136 GNHGAVRMGNGRLSKIRGIGDVRLTT 148
G+ G V+MGN ++K G+GDV L T
Sbjct: 317 GDFGDVKMGNNGVAKAVGMGDVCLET 342
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW84195.1 | 1.2e-15 | 37.24 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW14266.1 | 1.2e-15 | 37.24 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW42505.1 | 1.2e-15 | 37.24 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
KAA0051598.1 | 2.1e-15 | 36.55 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
TXG55926.1 | 2.1e-15 | 33.56 | hypothetical protein EZV62_017239 [Acer yangbiense] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 7.9e-10 | 30.87 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A438BTH6 | 5.8e-16 | 37.24 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438HI91 | 5.8e-16 | 37.24 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438E432 | 5.8e-16 | 37.24 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A5A7U8K2 | 1.0e-15 | 36.55 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
A0A5C7HIC1 | 1.0e-15 | 33.56 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017239 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |